Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 323 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 475 |
| AccII | CGCG | 2 cut(s) | 438, 495 |
| AciI | CCGC | 6 cut(s) | 132, 186, 292, 449, 493, 602 |
| AclWI | GGATC | 2 cut(s) | 388, 401 |
| AcoI | YGGCCR | 2 cut(s) | 70, 289 |
| AcyI | GRCGYC | 1 cut(s) | 324 |
| AfaI | GTAC | 4 cut(s) | 206, 506, 545, 579 |
| AfeI | AGCGCT | 1 cut(s) | 124 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 50, 144, 320, 475 |
| AgsI | TTSAA | 3 cut(s) | 99, 413, 608 |
| AhlI | ACTAGT | 1 cut(s) | 251 |
| AluBI | AGCT | 1 cut(s) | 599 |
| AluI | AGCT | 1 cut(s) | 599 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| Alw26I | GTCTC | 1 cut(s) | 362 |
| AlwI | GGATC | 2 cut(s) | 388, 401 |
| Aor51HI | AGCGCT | 1 cut(s) | 124 |
| AoxI | GGCC | 6 cut(s) | 37, 70, 105, 276, 289, 382 |
| ApeKI | GCWGC | 2 cut(s) | 120, 451 |
| AspLEI | GCGC | 2 cut(s) | 125, 326 |
| AspS9I | GGNCC | 3 cut(s) | 106, 277, 383 |
| AsuHPI | GGTGA | 1 cut(s) | 19 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BamHI | GGATCC | 1 cut(s) | 393 |
| BanI | GGYRCC | 1 cut(s) | 323 |
| BanII | GRGCYC | 1 cut(s) | 306 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BbvI | GCAGC | 2 cut(s) | 132, 438 |
| BccI | CCATC | 2 cut(s) | 38, 44 |
| BceAI | ACGGC | 3 cut(s) | 279, 291, 304 |
| BcoDI | GTCTC | 1 cut(s) | 362 |
| BcuI | ACTAGT | 1 cut(s) | 251 |
| BfaI | CTAG | 3 cut(s) | 17, 252, 372 |
| BfoI | RGCGCY | 2 cut(s) | 126, 327 |
| BisI | GCNGC | 5 cut(s) | 121, 133, 292, 452, 493 |
| BlpI | GCTNAGC | 1 cut(s) | 488 |
| BlsI | GCNGC | 5 cut(s) | 122, 134, 293, 453, 494 |
| BmcAI | AGTACT | 2 cut(s) | 206, 579 |
| BmgT120I | GGNCC | 3 cut(s) | 106, 277, 383 |
| BmiI | GGNNCC | 3 cut(s) | 136, 325, 395 |
| BmrI | ACTGGG | 1 cut(s) | 590 |
| BmsI | GCATC | 3 cut(s) | 367, 384, 549 |
| BmuI | ACTGGG | 1 cut(s) | 590 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 488 |
| BsaHI | GRCGYC | 1 cut(s) | 324 |
| BsaJI | CCNNGG | 2 cut(s) | 102, 143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 119, 149 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 50, 144, 320, 475 |
| Bse1I | ACTGG | 4 cut(s) | 40, 187, 212, 585 |
| BseDI | CCNNGG | 2 cut(s) | 102, 143 |
| BseGI | GGATG | 2 cut(s) | 358, 444 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 50, 144, 320, 475 |
| BseMII | CTCAG | 1 cut(s) | 502 |
| BseNI | ACTGG | 4 cut(s) | 40, 187, 212, 585 |
| BseRI | GAGGAG | 1 cut(s) | 504 |
| BseX3I | CGGCCG | 1 cut(s) | 289 |
| BseXI | GCAGC | 2 cut(s) | 132, 438 |
| BseYI | CCCAGC | 1 cut(s) | 595 |
| Bsh1236I | CGCG | 2 cut(s) | 438, 495 |
| Bsh1285I | CGRYCG | 1 cut(s) | 292 |
| BshFI | GGCC | 6 cut(s) | 39, 72, 107, 278, 291, 384 |
| BshNI | GGYRCC | 1 cut(s) | 323 |
| BsiEI | CGRYCG | 1 cut(s) | 292 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 50, 144, 320, 475 |
| BsmAI | GTCTC | 1 cut(s) | 362 |
| BsnI | GGCC | 6 cut(s) | 39, 72, 107, 278, 291, 384 |
| Bsp1286I | GDGCHC | 2 cut(s) | 174, 306 |
| Bsp143I | GATC | 1 cut(s) | 393 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 488 |
| Bsp19I | CCATGG | 2 cut(s) | 102, 143 |
| Bsp68I | TCGCGA | 1 cut(s) | 438 |
| BspACI | CCGC | 6 cut(s) | 132, 186, 292, 449, 493, 602 |
| BspANI | GGCC | 6 cut(s) | 39, 72, 107, 278, 291, 384 |
| BspCNI | CTCAG | 1 cut(s) | 501 |
| BspFNI | CGCG | 2 cut(s) | 438, 495 |
| BspLI | GGNNCC | 3 cut(s) | 136, 325, 395 |
| BspPI | GGATC | 2 cut(s) | 388, 401 |
| BspT107I | GGYRCC | 1 cut(s) | 323 |
| BsrI | ACTGG | 4 cut(s) | 40, 187, 212, 585 |
| BssECI | CCNNGG | 2 cut(s) | 102, 143 |
| BssMI | GATC | 1 cut(s) | 393 |
| BssNI | GRCGYC | 1 cut(s) | 324 |
| BssT1I | CCWWGG | 2 cut(s) | 102, 143 |
| Bst4CI | ACNGT | 3 cut(s) | 116, 164, 204 |
| BstACI | GRCGYC | 1 cut(s) | 324 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 559 |
| BstC8I | GCNNGC | 1 cut(s) | 56 |
| BstDEI | CTNAG | 2 cut(s) | 488, 574 |
| BstDSI | CCRYGG | 2 cut(s) | 102, 143 |
| BstF5I | GGATG | 2 cut(s) | 358, 444 |
| BstFNI | CGCG | 2 cut(s) | 438, 495 |
| BstH2I | RGCGCY | 2 cut(s) | 126, 327 |
| BstHHI | GCGC | 2 cut(s) | 125, 326 |
| BstKTI | GATC | 1 cut(s) | 396 |
| BstMAI | GTCTC | 1 cut(s) | 362 |
| BstMBI | GATC | 1 cut(s) | 393 |
| BstMCI | CGRYCG | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 64, 129, 381, 559 |
| BstUI | CGCG | 2 cut(s) | 438, 495 |
| BstV1I | GCAGC | 2 cut(s) | 132, 438 |
| BstX2I | RGATCY | 1 cut(s) | 393 |
| BstYI | RGATCY | 1 cut(s) | 393 |
| BstZI | CGGCCG | 1 cut(s) | 289 |
| BsuRI | GGCC | 6 cut(s) | 39, 72, 107, 278, 291, 384 |
| BtgI | CCRYGG | 2 cut(s) | 102, 143 |
| BtgZI | GCGATG | 2 cut(s) | 453, 510 |
| BtsCI | GGATG | 2 cut(s) | 358, 444 |
| BtsIMutI | CAGTG | 1 cut(s) | 33 |
| BtuMI | TCGCGA | 1 cut(s) | 438 |
| Cac8I | GCNNGC | 1 cut(s) | 56 |
| CfoI | GCGC | 2 cut(s) | 125, 326 |
| Cfr13I | GGNCC | 3 cut(s) | 106, 277, 383 |
| CseI | GACGC | 1 cut(s) | 271 |
| Csp6I | GTAC | 4 cut(s) | 205, 505, 544, 578 |
| CviAII | CATG | 5 cut(s) | 68, 103, 144, 347, 554 |
| CviQI | GTAC | 4 cut(s) | 205, 505, 544, 578 |
| DdeI | CTNAG | 2 cut(s) | 488, 574 |
| DinI | GGCGCC | 1 cut(s) | 325 |
| DpnI | GATC | 1 cut(s) | 395 |
| DpnII | GATC | 1 cut(s) | 393 |
| EaeI | YGGCCR | 2 cut(s) | 70, 289 |
| EagI | CGGCCG | 1 cut(s) | 289 |
| EciI | GGCGGA | 1 cut(s) | 201 |
| EclXI | CGGCCG | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 2 cut(s) | 102, 143 |
| Eco24I | GRGCYC | 1 cut(s) | 306 |
| Eco47III | AGCGCT | 1 cut(s) | 124 |
| Eco52I | CGGCCG | 1 cut(s) | 289 |
| EcoT14I | CCWWGG | 2 cut(s) | 102, 143 |
| EcoT22I | ATGCAT | 1 cut(s) | 360 |
| EcoT38I | GRGCYC | 1 cut(s) | 306 |
| EgeI | GGCGCC | 1 cut(s) | 325 |
| EheI | GGCGCC | 1 cut(s) | 325 |
| ErhI | CCWWGG | 2 cut(s) | 102, 143 |
| FaeI | CATG | 5 cut(s) | 71, 106, 147, 350, 557 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 209, 241 |
| FatI | CATG | 5 cut(s) | 67, 102, 143, 346, 553 |
| FauI | CCCGC | 1 cut(s) | 456 |
| Fnu4HI | GCNGC | 5 cut(s) | 121, 133, 292, 452, 493 |
| FokI | GGATG | 2 cut(s) | 345, 431 |
| FriOI | GRGCYC | 1 cut(s) | 306 |
| Fsp4HI | GCNGC | 5 cut(s) | 121, 133, 292, 452, 493 |
| FspBI | CTAG | 3 cut(s) | 17, 252, 372 |
| GlaI | GCGC | 2 cut(s) | 124, 325 |
| GluI | GCNGC | 5 cut(s) | 121, 133, 292, 452, 493 |
| GsaI | CCCAGC | 1 cut(s) | 599 |
| HaeII | RGCGCY | 2 cut(s) | 126, 327 |
| HaeIII | GGCC | 6 cut(s) | 39, 72, 107, 278, 291, 384 |
| HgaI | GACGC | 1 cut(s) | 271 |
| HhaI | GCGC | 2 cut(s) | 125, 326 |
| Hin1I | GRCGYC | 1 cut(s) | 324 |
| Hin1II | CATG | 5 cut(s) | 71, 106, 147, 350, 557 |
| Hin6I | GCGC | 2 cut(s) | 123, 324 |
| HinP1I | GCGC | 2 cut(s) | 123, 324 |
| HinfI | GANTC | 3 cut(s) | 80, 409, 591 |
| HphI | GGTGA | 1 cut(s) | 19 |
| Hpy188I | TCNGA | 2 cut(s) | 308, 526 |
| Hpy188III | TCNNGA | 3 cut(s) | 167, 367, 437 |
| Hpy99I | CGWCG | 2 cut(s) | 168, 438 |
| HpyAV | CCTTC | 1 cut(s) | 557 |
| HpyCH4III | ACNGT | 3 cut(s) | 116, 164, 204 |
| HpyCH4V | TGCA | 3 cut(s) | 67, 358, 553 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 64, 129, 381, 559 |
| HpyF3I | CTNAG | 2 cut(s) | 488, 574 |
| Hsp92I | GRCGYC | 1 cut(s) | 324 |
| Hsp92II | CATG | 5 cut(s) | 71, 106, 147, 350, 557 |
| HspAI | GCGC | 2 cut(s) | 123, 324 |
| KasI | GGCGCC | 1 cut(s) | 323 |
| Kzo9I | GATC | 1 cut(s) | 393 |
| LmnI | GCTCC | 2 cut(s) | 140, 604 |
| LpnPI | CCDG | 9 cut(s) | 21, 168, 193, 253, 254, 327, 366, 566, 609 |
| Lsp1109I | GCAGC | 2 cut(s) | 132, 438 |
| LweI | GCATC | 3 cut(s) | 367, 384, 549 |
| MaeI | CTAG | 3 cut(s) | 17, 252, 372 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MalI | GATC | 1 cut(s) | 395 |
| MboI | GATC | 1 cut(s) | 393 |
| MboII | GAAGA | 3 cut(s) | 217, 225, 600 |
| MflI | RGATCY | 1 cut(s) | 393 |
| MhlI | GDGCHC | 2 cut(s) | 174, 306 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 2 cut(s) | 74, 189 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| Mly113I | GGCGCC | 1 cut(s) | 324 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MnlI | CCTC | 4 cut(s) | 247, 290, 338, 525 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| Mph1103I | ATGCAT | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 2 cut(s) | 132, 451 |
| MvnI | CGCG | 2 cut(s) | 438, 495 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 64, 129, 381, 559 |
| NarI | GGCGCC | 1 cut(s) | 324 |
| NcoI | CCATGG | 2 cut(s) | 102, 143 |
| NdeII | GATC | 1 cut(s) | 393 |
| NlaIII | CATG | 5 cut(s) | 71, 106, 147, 350, 557 |
| NlaIV | GGNNCC | 3 cut(s) | 136, 325, 395 |
| NmuCI | GTSAC | 1 cut(s) | 85 |
| NruI | TCGCGA | 1 cut(s) | 438 |
| NsiI | ATGCAT | 1 cut(s) | 360 |
| PfeI | GAWTC | 2 cut(s) | 409, 591 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 475 |
| PkrI | GCNGC | 5 cut(s) | 122, 134, 293, 453, 494 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PluTI | GGCGCC | 1 cut(s) | 327 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| PspFI | CCCAGC | 1 cut(s) | 595 |
| PspN4I | GGNNCC | 3 cut(s) | 136, 325, 395 |
| PspPI | GGNCC | 3 cut(s) | 106, 277, 383 |
| PsuI | RGATCY | 1 cut(s) | 393 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| RruI | TCGCGA | 1 cut(s) | 438 |
| RsaI | GTAC | 4 cut(s) | 206, 506, 545, 579 |
| RsaNI | GTAC | 4 cut(s) | 205, 505, 544, 578 |
| SatI | GCNGC | 5 cut(s) | 121, 133, 292, 452, 493 |
| Sau3AI | GATC | 1 cut(s) | 393 |
| Sau96I | GGNCC | 3 cut(s) | 106, 277, 383 |
| ScaI | AGTACT | 2 cut(s) | 206, 579 |
| SchI | GAGTC | 1 cut(s) | 74 |
| SduI | GDGCHC | 2 cut(s) | 174, 306 |
| SetI | ASST | 5 cut(s) | 46, 316, 506, 549, 601 |
| SfaNI | GCATC | 3 cut(s) | 367, 384, 549 |
| SfoI | GGCGCC | 1 cut(s) | 325 |
| SpeI | ACTAGT | 1 cut(s) | 251 |
| Sse9I | AATT | 2 cut(s) | 74, 189 |
| SsiI | CCGC | 6 cut(s) | 132, 186, 292, 449, 493, 602 |
| SspDI | GGCGCC | 1 cut(s) | 323 |
| SspMI | CTAG | 3 cut(s) | 17, 252, 372 |
| StyI | CCWWGG | 2 cut(s) | 102, 143 |
| TaaI | ACNGT | 3 cut(s) | 116, 164, 204 |
| TaqI | TCGA | 3 cut(s) | 78, 166, 366 |
| TasI | AATT | 2 cut(s) | 74, 189 |
| TatI | WGTACW | 2 cut(s) | 204, 577 |
| TauI | GCSGC | 3 cut(s) | 135, 294, 495 |
| TfiI | GAWTC | 2 cut(s) | 409, 591 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TseFI | GTSAC | 1 cut(s) | 85 |
| TseI | GCWGC | 2 cut(s) | 120, 451 |
| Tsp45I | GTSAC | 1 cut(s) | 85 |
| TspDTI | ATGAA | 2 cut(s) | 211, 513 |
| TspRI | CASTG | 1 cut(s) | 40 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 475 |
| XspI | CTAG | 3 cut(s) | 17, 252, 372 |
| ZrmI | AGTACT | 2 cut(s) | 206, 579 |
| Zsp2I | ATGCAT | 1 cut(s) | 360 |