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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 415 |
| AccB1I | GGYRCC | 1 cut(s) | 415 |
| AccII | CGCG | 4 cut(s) | 141, 294, 315, 317 |
| AciI | CCGC | 7 cut(s) | 79, 95, 139, 292, 313, 345, 391 |
| AclWI | GGATC | 3 cut(s) | 49, 62, 269 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AcyI | GRCGYC | 1 cut(s) | 435 |
| AfaI | GTAC | 3 cut(s) | 152, 191, 417 |
| AgsI | TTSAA | 2 cut(s) | 71, 330 |
| AjnI | CCWGG | 3 cut(s) | 268, 300, 437 |
| AluBI | AGCT | 2 cut(s) | 360, 367 |
| AluI | AGCT | 2 cut(s) | 360, 367 |
| Alw21I | GWGCWC | 2 cut(s) | 252, 369 |
| Alw26I | GTCTC | 2 cut(s) | 8, 162 |
| AlwI | GGATC | 3 cut(s) | 49, 62, 269 |
| AoxI | GGCC | 3 cut(s) | 28, 108, 400 |
| Asp718I | GGTACC | 1 cut(s) | 415 |
| AspLEI | GCGC | 2 cut(s) | 296, 317 |
| AspS9I | GGNCC | 1 cut(s) | 29 |
| AsuHPI | GGTGA | 1 cut(s) | 284 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanI | GGYRCC | 1 cut(s) | 415 |
| BanII | GRGCYC | 1 cut(s) | 369 |
| Bbv12I | GWGCWC | 2 cut(s) | 252, 369 |
| BccI | CCATC | 2 cut(s) | 123, 250 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 353, 387 |
| BciT130I | CCWGG | 3 cut(s) | 270, 302, 439 |
| BcoDI | GTCTC | 2 cut(s) | 8, 162 |
| BfaI | CTAG | 1 cut(s) | 197 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 399 |
| BisI | GCNGC | 3 cut(s) | 139, 313, 345 |
| BlsI | GCNGC | 3 cut(s) | 140, 314, 346 |
| BmcAI | AGTACT | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 3 cut(s) | 270, 302, 439 |
| BmgT120I | GGNCC | 1 cut(s) | 29 |
| BmiI | GGNNCC | 2 cut(s) | 56, 417 |
| BmrFI | CCNGG | 3 cut(s) | 270, 302, 439 |
| BmsI | GCATC | 2 cut(s) | 13, 195 |
| BsaBI | GATNNNNATC | 1 cut(s) | 241 |
| BsaHI | GRCGYC | 1 cut(s) | 435 |
| BsaI | GGTCTC | 1 cut(s) | 8 |
| Bse118I | RCCGGY | 1 cut(s) | 106 |
| Bse1I | ACTGG | 1 cut(s) | 419 |
| Bse8I | GATNNNNATC | 1 cut(s) | 241 |
| BseBI | CCWGG | 3 cut(s) | 270, 302, 439 |
| BseGI | GGATG | 1 cut(s) | 4 |
| BseJI | GATNNNNATC | 1 cut(s) | 241 |
| BseMII | CTCAG | 2 cut(s) | 218, 370 |
| BseNI | ACTGG | 1 cut(s) | 419 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| Bsh1236I | CGCG | 4 cut(s) | 141, 294, 315, 317 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshFI | GGCC | 3 cut(s) | 30, 110, 402 |
| BshNI | GGYRCC | 1 cut(s) | 415 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiHKAI | GWGCWC | 2 cut(s) | 252, 369 |
| BsiSI | CCGG | 2 cut(s) | 27, 107 |
| BslFI | GGGAC | 1 cut(s) | 407 |
| BsmAI | GTCTC | 2 cut(s) | 8, 162 |
| BsmBI | CGTCTC | 1 cut(s) | 162 |
| BsmFI | GGGAC | 1 cut(s) | 407 |
| BsnI | GGCC | 3 cut(s) | 30, 110, 402 |
| Bso31I | GGTCTC | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 2 cut(s) | 252, 369 |
| Bsp143I | GATC | 4 cut(s) | 54, 112, 274, 318 |
| BspACI | CCGC | 7 cut(s) | 79, 95, 139, 292, 313, 345, 391 |
| BspANI | GGCC | 3 cut(s) | 30, 110, 402 |
| BspCNI | CTCAG | 2 cut(s) | 219, 369 |
| BspFNI | CGCG | 4 cut(s) | 141, 294, 315, 317 |
| BspLI | GGNNCC | 2 cut(s) | 56, 417 |
| BspPI | GGATC | 3 cut(s) | 49, 62, 269 |
| BspT107I | GGYRCC | 1 cut(s) | 415 |
| BspTNI | GGTCTC | 1 cut(s) | 8 |
| BsrFI | RCCGGY | 1 cut(s) | 106 |
| BsrI | ACTGG | 1 cut(s) | 419 |
| BssAI | RCCGGY | 1 cut(s) | 106 |
| BssMI | GATC | 4 cut(s) | 54, 112, 274, 318 |
| BssNI | GRCGYC | 1 cut(s) | 435 |
| Bst2UI | CCWGG | 3 cut(s) | 270, 302, 439 |
| Bst4CI | ACNGT | 1 cut(s) | 215 |
| BstACI | GRCGYC | 1 cut(s) | 435 |
| BstC8I | GCNNGC | 2 cut(s) | 298, 391 |
| BstDEI | CTNAG | 3 cut(s) | 121, 227, 356 |
| BstF5I | GGATG | 1 cut(s) | 4 |
| BstFNI | CGCG | 4 cut(s) | 141, 294, 315, 317 |
| BstHHI | GCGC | 2 cut(s) | 296, 317 |
| BstKTI | GATC | 4 cut(s) | 57, 115, 277, 321 |
| BstMAI | GTCTC | 2 cut(s) | 8, 162 |
| BstMBI | GATC | 4 cut(s) | 54, 112, 274, 318 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 302, 399 |
| BstNI | CCWGG | 3 cut(s) | 270, 302, 439 |
| BstSCI | CCNGG | 3 cut(s) | 268, 300, 437 |
| BstUI | CGCG | 4 cut(s) | 141, 294, 315, 317 |
| BstX2I | RGATCY | 1 cut(s) | 54 |
| BstYI | RGATCY | 1 cut(s) | 54 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 30, 110, 402 |
| BtsCI | GGATG | 1 cut(s) | 4 |
| Cac8I | GCNNGC | 2 cut(s) | 298, 391 |
| CfoI | GCGC | 2 cut(s) | 296, 317 |
| Cfr10I | RCCGGY | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 1 cut(s) | 29 |
| CseI | GACGC | 1 cut(s) | 443 |
| Csp6I | GTAC | 3 cut(s) | 151, 190, 416 |
| CviJI | RGCY | 7 cut(s) | 30, 110, 305, 344, 360, 367, 402 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 110, 305, 344, 360, 367, 402 |
| CviQI | GTAC | 3 cut(s) | 151, 190, 416 |
| DdeI | CTNAG | 3 cut(s) | 121, 227, 356 |
| DpnI | GATC | 4 cut(s) | 56, 114, 276, 320 |
| DpnII | GATC | 4 cut(s) | 54, 112, 274, 318 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 367 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 1 cut(s) | 369 |
| Eco31I | GGTCTC | 1 cut(s) | 8 |
| Eco32I | GATATC | 1 cut(s) | 91 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| Eco53kI | GAGCTC | 1 cut(s) | 367 |
| EcoICRI | GAGCTC | 1 cut(s) | 367 |
| EcoRII | CCWGG | 3 cut(s) | 268, 300, 437 |
| EcoRV | GATATC | 1 cut(s) | 91 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 369 |
| Esp3I | CGTCTC | 1 cut(s) | 162 |
| FaiI | YATR | 7 cut(s) | 23, 64, 211, 221, 258, 372, 430 |
| FaqI | GGGAC | 1 cut(s) | 407 |
| FauI | CCCGC | 2 cut(s) | 102, 398 |
| Fnu4HI | GCNGC | 3 cut(s) | 139, 313, 345 |
| FriOI | GRGCYC | 1 cut(s) | 369 |
| Fsp4HI | GCNGC | 3 cut(s) | 139, 313, 345 |
| FspBI | CTAG | 1 cut(s) | 197 |
| GlaI | GCGC | 2 cut(s) | 295, 316 |
| GluI | GCNGC | 3 cut(s) | 139, 313, 345 |
| HaeIII | GGCC | 3 cut(s) | 30, 110, 402 |
| HapII | CCGG | 2 cut(s) | 27, 107 |
| HgaI | GACGC | 1 cut(s) | 443 |
| HhaI | GCGC | 2 cut(s) | 296, 317 |
| Hin1I | GRCGYC | 1 cut(s) | 435 |
| Hin6I | GCGC | 2 cut(s) | 294, 315 |
| HinP1I | GCGC | 2 cut(s) | 294, 315 |
| HinfI | GANTC | 1 cut(s) | 237 |
| HpaII | CCGG | 2 cut(s) | 27, 107 |
| HphI | GGTGA | 1 cut(s) | 284 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 228, 338 |
| Hpy188III | TCNNGA | 3 cut(s) | 37, 58, 456 |
| Hpy99I | CGWCG | 1 cut(s) | 437 |
| HpyAV | CCTTC | 1 cut(s) | 275 |
| HpyCH4III | ACNGT | 1 cut(s) | 215 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 302, 399 |
| HpyF3I | CTNAG | 3 cut(s) | 121, 227, 356 |
| Hsp92I | GRCGYC | 1 cut(s) | 435 |
| HspAI | GCGC | 2 cut(s) | 294, 315 |
| KpnI | GGTACC | 1 cut(s) | 419 |
| Kzo9I | GATC | 4 cut(s) | 54, 112, 274, 318 |
| LmnI | GCTCC | 1 cut(s) | 379 |
| LweI | GCATC | 2 cut(s) | 13, 195 |
| MaeI | CTAG | 1 cut(s) | 197 |
| MaeIII | GTNAC | 1 cut(s) | 215 |
| MalI | GATC | 4 cut(s) | 56, 114, 276, 320 |
| MboI | GATC | 4 cut(s) | 54, 112, 274, 318 |
| MboII | GAAGA | 3 cut(s) | 98, 246, 362 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MflI | RGATCY | 1 cut(s) | 54 |
| MhlI | GDGCHC | 2 cut(s) | 252, 369 |
| MluCI | AATT | 4 cut(s) | 71, 222, 395, 410 |
| MnlI | CCTC | 4 cut(s) | 92, 136, 288, 435 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MspI | CCGG | 2 cut(s) | 27, 107 |
| MspR9I | CCNGG | 3 cut(s) | 270, 302, 439 |
| MunI | CAATTG | 1 cut(s) | 410 |
| MvaI | CCWGG | 3 cut(s) | 270, 302, 439 |
| MvnI | CGCG | 4 cut(s) | 141, 294, 315, 317 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 302, 399 |
| NdeII | GATC | 4 cut(s) | 54, 112, 274, 318 |
| NlaIV | GGNNCC | 2 cut(s) | 56, 417 |
| NmuCI | GTSAC | 1 cut(s) | 215 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PfeI | GAWTC | 1 cut(s) | 237 |
| PkrI | GCNGC | 3 cut(s) | 140, 314, 346 |
| Psp124BI | GAGCTC | 1 cut(s) | 369 |
| Psp6I | CCWGG | 3 cut(s) | 268, 300, 437 |
| PspGI | CCWGG | 3 cut(s) | 268, 300, 437 |
| PspN4I | GGNNCC | 2 cut(s) | 56, 417 |
| PspPI | GGNCC | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 54 |
| RsaI | GTAC | 3 cut(s) | 152, 191, 417 |
| RsaNI | GTAC | 3 cut(s) | 151, 190, 416 |
| SacI | GAGCTC | 1 cut(s) | 369 |
| SatI | GCNGC | 3 cut(s) | 139, 313, 345 |
| Sau3AI | GATC | 4 cut(s) | 54, 112, 274, 318 |
| Sau96I | GGNCC | 1 cut(s) | 29 |
| ScaI | AGTACT | 1 cut(s) | 152 |
| ScrFI | CCNGG | 3 cut(s) | 270, 302, 439 |
| SduI | GDGCHC | 2 cut(s) | 252, 369 |
| SetI | ASST | 3 cut(s) | 127, 362, 369 |
| SfaNI | GCATC | 2 cut(s) | 13, 195 |
| Sse9I | AATT | 4 cut(s) | 71, 222, 395, 410 |
| SsiI | CCGC | 7 cut(s) | 79, 95, 139, 292, 313, 345, 391 |
| SspMI | CTAG | 1 cut(s) | 197 |
| SstI | GAGCTC | 1 cut(s) | 369 |
| StyD4I | CCNGG | 3 cut(s) | 268, 300, 437 |
| TaaI | ACNGT | 1 cut(s) | 215 |
| TaqI | TCGA | 2 cut(s) | 84, 252 |
| TasI | AATT | 4 cut(s) | 71, 222, 395, 410 |
| TatI | WGTACW | 2 cut(s) | 150, 189 |
| TauI | GCSGC | 3 cut(s) | 141, 315, 347 |
| TfiI | GAWTC | 1 cut(s) | 237 |
| TseFI | GTSAC | 1 cut(s) | 215 |
| Tsp45I | GTSAC | 1 cut(s) | 215 |
| XspI | CTAG | 1 cut(s) | 197 |
| ZrmI | AGTACT | 1 cut(s) | 152 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |