Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 829 |
| Acc36I | ACCTGC | 1 cut(s) | 320 |
| AccBSI | CCGCTC | 2 cut(s) | 384, 391 |
| AccI | GTMKAC | 1 cut(s) | 164 |
| AccII | CGCG | 4 cut(s) | 291, 298, 304, 948 |
| AclWI | GGATC | 3 cut(s) | 315, 856, 869 |
| AcoI | YGGCCR | 2 cut(s) | 251, 480 |
| AcuI | CTGAAG | 1 cut(s) | 424 |
| AfaI | GTAC | 3 cut(s) | 270, 771, 959 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 243, 374, 503, 604, 773 |
| AflIII | ACRYGT | 1 cut(s) | 828 |
| AgeI | ACCGGT | 1 cut(s) | 766 |
| AgsI | TTSAA | 2 cut(s) | 46, 656 |
| AjnI | CCWGG | 3 cut(s) | 191, 281, 477 |
| AluBI | AGCT | 1 cut(s) | 314 |
| AluI | AGCT | 1 cut(s) | 314 |
| Alw26I | GTCTC | 3 cut(s) | 269, 287, 815 |
| AlwI | GGATC | 3 cut(s) | 315, 856, 869 |
| AoxI | GGCC | 8 cut(s) | 102, 149, 251, 480, 490, 558, 729, 835 |
| ApaI | GGGCCC | 1 cut(s) | 106 |
| ApeKI | GCWGC | 4 cut(s) | 326, 395, 744, 917 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 428, 460 |
| AsiGI | ACCGGT | 1 cut(s) | 766 |
| AspLEI | GCGC | 3 cut(s) | 111, 304, 578 |
| AspS9I | GGNCC | 5 cut(s) | 102, 103, 559, 730, 836 |
| AsuC2I | CCSGG | 1 cut(s) | 620 |
| AsuHPI | GGTGA | 1 cut(s) | 538 |
| BaeGI | GKGCMC | 1 cut(s) | 106 |
| BalI | TGGCCA | 2 cut(s) | 253, 482 |
| BamHI | GGATCC | 1 cut(s) | 861 |
| BanII | GRGCYC | 3 cut(s) | 106, 759, 781 |
| BbsI | GAAGAC | 1 cut(s) | 34 |
| BbvI | GCAGC | 4 cut(s) | 338, 382, 731, 904 |
| BccI | CCATC | 6 cut(s) | 95, 237, 262, 497, 594, 930 |
| BceAI | ACGGC | 4 cut(s) | 164, 744, 757, 873 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 6, 40 |
| BciT130I | CCWGG | 3 cut(s) | 193, 283, 479 |
| BcnI | CCSGG | 1 cut(s) | 620 |
| BcoDI | GTCTC | 3 cut(s) | 269, 287, 815 |
| BfaI | CTAG | 2 cut(s) | 311, 773 |
| BfoI | RGCGCY | 2 cut(s) | 112, 579 |
| BfuAI | ACCTGC | 1 cut(s) | 320 |
| BisI | GCNGC | 7 cut(s) | 112, 327, 389, 396, 745, 918, 946 |
| BlsI | GCNGC | 7 cut(s) | 113, 328, 390, 397, 746, 919, 947 |
| BmcAI | AGTACT | 1 cut(s) | 959 |
| Bme1390I | CCNGG | 4 cut(s) | 193, 283, 479, 620 |
| BmgT120I | GGNCC | 5 cut(s) | 102, 103, 559, 730, 836 |
| BmiI | GGNNCC | 5 cut(s) | 104, 589, 778, 838, 863 |
| BmrFI | CCNGG | 4 cut(s) | 193, 283, 479, 620 |
| BmrI | ACTGGG | 1 cut(s) | 109 |
| BmsI | GCATC | 4 cut(s) | 26, 468, 798, 820 |
| BmuI | ACTGGG | 1 cut(s) | 109 |
| BpiI | GAAGAC | 1 cut(s) | 34 |
| BpmI | CTGGAG | 1 cut(s) | 214 |
| Bpu10I | CCTNAGC | 1 cut(s) | 721 |
| BpuMI | CCSGG | 1 cut(s) | 620 |
| BsaJI | CCNNGG | 1 cut(s) | 555 |
| BsaWI | WCCGGW | 3 cut(s) | 94, 271, 766 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 53, 83 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 243, 374, 503, 604, 773 |
| Bse118I | RCCGGY | 3 cut(s) | 635, 766, 913 |
| Bse1I | ACTGG | 5 cut(s) | 104, 174, 323, 493, 709 |
| BseBI | CCWGG | 3 cut(s) | 193, 283, 479 |
| BseDI | CCNNGG | 1 cut(s) | 555 |
| BseGI | GGATG | 4 cut(s) | 254, 811, 897, 962 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 243, 374, 503, 604, 773 |
| BseNI | ACTGG | 5 cut(s) | 104, 174, 323, 493, 709 |
| BseSI | GKGCMC | 1 cut(s) | 106 |
| BseXI | GCAGC | 4 cut(s) | 338, 382, 731, 904 |
| BseYI | CCCAGC | 2 cut(s) | 105, 561 |
| BsgI | GTGCAG | 1 cut(s) | 667 |
| Bsh1236I | CGCG | 4 cut(s) | 291, 298, 304, 948 |
| Bsh1285I | CGRYCG | 1 cut(s) | 571 |
| BshFI | GGCC | 8 cut(s) | 104, 151, 253, 482, 492, 560, 731, 837 |
| BshTI | ACCGGT | 1 cut(s) | 766 |
| BsiEI | CGRYCG | 1 cut(s) | 571 |
| BsiSI | CCGG | 7 cut(s) | 95, 272, 619, 636, 767, 834, 914 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 243, 374, 503, 604, 773 |
| BsmAI | GTCTC | 3 cut(s) | 269, 287, 815 |
| BsmBI | CGTCTC | 1 cut(s) | 287 |
| BsmI | GAATGC | 2 cut(s) | 35, 328 |
| BsnI | GGCC | 8 cut(s) | 104, 151, 253, 482, 492, 560, 731, 837 |
| Bsp120I | GGGCCC | 1 cut(s) | 102 |
| Bsp1286I | GDGCHC | 3 cut(s) | 106, 759, 781 |
| Bsp143I | GATC | 2 cut(s) | 307, 861 |
| Bsp19I | CCATGG | 1 cut(s) | 555 |
| Bsp68I | TCGCGA | 1 cut(s) | 291 |
| BspANI | GGCC | 8 cut(s) | 104, 151, 253, 482, 492, 560, 731, 837 |
| BspFNI | CGCG | 4 cut(s) | 291, 298, 304, 948 |
| BspLI | GGNNCC | 5 cut(s) | 104, 589, 778, 838, 863 |
| BspMI | ACCTGC | 1 cut(s) | 320 |
| BspPI | GGATC | 3 cut(s) | 315, 856, 869 |
| BsrBI | CCGCTC | 2 cut(s) | 384, 391 |
| BsrFI | RCCGGY | 3 cut(s) | 635, 766, 913 |
| BsrI | ACTGG | 5 cut(s) | 104, 174, 323, 493, 709 |
| BssAI | RCCGGY | 3 cut(s) | 635, 766, 913 |
| BssECI | CCNNGG | 1 cut(s) | 555 |
| BssMI | GATC | 2 cut(s) | 307, 861 |
| BssT1I | CCWWGG | 1 cut(s) | 555 |
| Bst2UI | CCWGG | 3 cut(s) | 193, 283, 479 |
| Bst4CI | ACNGT | 2 cut(s) | 569, 584 |
| Bst6I | CTCTTC | 1 cut(s) | 694 |
| BstC8I | GCNNGC | 4 cut(s) | 300, 386, 393, 494 |
| BstDEI | CTNAG | 2 cut(s) | 721, 928 |
| BstDSI | CCRYGG | 1 cut(s) | 555 |
| BstF5I | GGATG | 4 cut(s) | 254, 811, 897, 962 |
| BstFNI | CGCG | 4 cut(s) | 291, 298, 304, 948 |
| BstH2I | RGCGCY | 2 cut(s) | 112, 579 |
| BstHHI | GCGC | 3 cut(s) | 111, 304, 578 |
| BstKTI | GATC | 2 cut(s) | 310, 864 |
| BstMAI | GTCTC | 3 cut(s) | 269, 287, 815 |
| BstMBI | GATC | 2 cut(s) | 307, 861 |
| BstMCI | CGRYCG | 1 cut(s) | 571 |
| BstNI | CCWGG | 3 cut(s) | 193, 283, 479 |
| BstNSI | RCATGY | 1 cut(s) | 832 |
| BstSCI | CCNGG | 4 cut(s) | 191, 281, 477, 618 |
| BstSLI | GKGCMC | 1 cut(s) | 106 |
| BstUI | CGCG | 4 cut(s) | 291, 298, 304, 948 |
| BstV1I | GCAGC | 4 cut(s) | 338, 382, 731, 904 |
| BstV2I | GAAGAC | 1 cut(s) | 34 |
| BstX2I | RGATCY | 2 cut(s) | 307, 861 |
| BstYI | RGATCY | 2 cut(s) | 307, 861 |
| BsuRI | GGCC | 8 cut(s) | 104, 151, 253, 482, 492, 560, 731, 837 |
| BtgI | CCRYGG | 1 cut(s) | 555 |
| BtsCI | GGATG | 4 cut(s) | 254, 811, 897, 962 |
| BtsIMutI | CAGTG | 3 cut(s) | 316, 589, 702 |
| BtuMI | TCGCGA | 1 cut(s) | 291 |
| BveI | ACCTGC | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 4 cut(s) | 300, 386, 393, 494 |
| CfoI | GCGC | 3 cut(s) | 111, 304, 578 |
| Cfr10I | RCCGGY | 3 cut(s) | 635, 766, 913 |
| Cfr13I | GGNCC | 5 cut(s) | 102, 103, 559, 730, 836 |
| CseI | GACGC | 2 cut(s) | 142, 304 |
| Csp6I | GTAC | 3 cut(s) | 269, 770, 958 |
| CspAI | ACCGGT | 1 cut(s) | 766 |
| CviAII | CATG | 3 cut(s) | 521, 556, 829 |
| CviQI | GTAC | 3 cut(s) | 269, 770, 958 |
| DdeI | CTNAG | 2 cut(s) | 721, 928 |
| DpnI | GATC | 2 cut(s) | 309, 863 |
| DpnII | GATC | 2 cut(s) | 307, 861 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 829 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 829 |
| EaeI | YGGCCR | 2 cut(s) | 251, 480 |
| Eam1104I | CTCTTC | 1 cut(s) | 694 |
| EarI | CTCTTC | 1 cut(s) | 694 |
| EciI | GGCGGA | 2 cut(s) | 654, 875 |
| Eco130I | CCWWGG | 1 cut(s) | 555 |
| Eco24I | GRGCYC | 3 cut(s) | 106, 759, 781 |
| Eco32I | GATATC | 1 cut(s) | 475 |
| Eco57I | CTGAAG | 1 cut(s) | 424 |
| EcoRII | CCWGG | 3 cut(s) | 191, 281, 477 |
| EcoRV | GATATC | 1 cut(s) | 475 |
| EcoT14I | CCWWGG | 1 cut(s) | 555 |
| EcoT22I | ATGCAT | 1 cut(s) | 813 |
| EcoT38I | GRGCYC | 3 cut(s) | 106, 759, 781 |
| ErhI | CCWWGG | 1 cut(s) | 555 |
| Esp3I | CGTCTC | 1 cut(s) | 287 |
| FaeI | CATG | 3 cut(s) | 524, 559, 832 |
| FatI | CATG | 3 cut(s) | 520, 555, 828 |
| FauI | CCCGC | 2 cut(s) | 297, 909 |
| FblI | GTMKAC | 1 cut(s) | 164 |
| Fnu4HI | GCNGC | 7 cut(s) | 112, 327, 389, 396, 745, 918, 946 |
| FokI | GGATG | 4 cut(s) | 241, 798, 884, 949 |
| FriOI | GRGCYC | 3 cut(s) | 106, 759, 781 |
| Fsp4HI | GCNGC | 7 cut(s) | 112, 327, 389, 396, 745, 918, 946 |
| FspBI | CTAG | 2 cut(s) | 311, 773 |
| GlaI | GCGC | 3 cut(s) | 110, 303, 577 |
| GluI | GCNGC | 7 cut(s) | 112, 327, 389, 396, 745, 918, 946 |
| GsaI | CCCAGC | 2 cut(s) | 109, 565 |
| GsuI | CTGGAG | 1 cut(s) | 214 |
| HaeII | RGCGCY | 2 cut(s) | 112, 579 |
| HaeIII | GGCC | 8 cut(s) | 104, 151, 253, 482, 492, 560, 731, 837 |
| HapII | CCGG | 7 cut(s) | 95, 272, 619, 636, 767, 834, 914 |
| HgaI | GACGC | 2 cut(s) | 142, 304 |
| HhaI | GCGC | 3 cut(s) | 111, 304, 578 |
| Hin1II | CATG | 3 cut(s) | 524, 559, 832 |
| Hin6I | GCGC | 3 cut(s) | 109, 302, 576 |
| HinP1I | GCGC | 3 cut(s) | 109, 302, 576 |
| HincII | GTYRAC | 2 cut(s) | 165, 541 |
| HindII | GTYRAC | 2 cut(s) | 165, 541 |
| HinfI | GANTC | 2 cut(s) | 188, 533 |
| HpaII | CCGG | 7 cut(s) | 95, 272, 619, 636, 767, 834, 914 |
| HphI | GGTGA | 1 cut(s) | 538 |
| Hpy166II | GTNNAC | 4 cut(s) | 165, 269, 541, 698 |
| Hpy188I | TCNGA | 4 cut(s) | 183, 443, 761, 977 |
| Hpy188III | TCNNGA | 6 cut(s) | 290, 412, 653, 844, 859, 865 |
| Hpy8I | GTNNAC | 4 cut(s) | 165, 269, 541, 698 |
| Hpy99I | CGWCG | 3 cut(s) | 166, 730, 808 |
| HpyAV | CCTTC | 4 cut(s) | 82, 178, 374, 850 |
| HpyCH4III | ACNGT | 2 cut(s) | 569, 584 |
| HpyCH4V | TGCA | 6 cut(s) | 326, 520, 632, 684, 747, 811 |
| HpyF3I | CTNAG | 2 cut(s) | 721, 928 |
| Hsp92II | CATG | 3 cut(s) | 524, 559, 832 |
| HspAI | GCGC | 3 cut(s) | 109, 302, 576 |
| Kzo9I | GATC | 2 cut(s) | 307, 861 |
| LmnI | GCTCC | 2 cut(s) | 74, 776 |
| Lsp1109I | GCAGC | 4 cut(s) | 338, 382, 731, 904 |
| LweI | GCATC | 4 cut(s) | 26, 468, 798, 820 |
| MaeI | CTAG | 2 cut(s) | 311, 773 |
| MalI | GATC | 2 cut(s) | 309, 863 |
| MbiI | CCGCTC | 2 cut(s) | 384, 391 |
| MboI | GATC | 2 cut(s) | 307, 861 |
| MboII | GAAGA | 3 cut(s) | 34, 681, 874 |
| MflI | RGATCY | 2 cut(s) | 307, 861 |
| MhlI | GDGCHC | 3 cut(s) | 106, 759, 781 |
| MlsI | TGGCCA | 2 cut(s) | 253, 482 |
| MluCI | AATT | 2 cut(s) | 527, 642 |
| MluNI | TGGCCA | 2 cut(s) | 253, 482 |
| MlyI | GAGTC | 1 cut(s) | 182 |
| MmeI | TCCRAC | 1 cut(s) | 450 |
| MnlI | CCTC | 9 cut(s) | 60, 189, 268, 378, 559, 697, 743, 791, 943 |
| Mox20I | TGGCCA | 2 cut(s) | 253, 482 |
| Mph1103I | ATGCAT | 1 cut(s) | 813 |
| MscI | TGGCCA | 2 cut(s) | 253, 482 |
| MslI | CAYNNNNRTG | 2 cut(s) | 321, 464 |
| Msp20I | TGGCCA | 2 cut(s) | 253, 482 |
| MspI | CCGG | 7 cut(s) | 95, 272, 619, 636, 767, 834, 914 |
| MspR9I | CCNGG | 4 cut(s) | 193, 283, 479, 620 |
| Mva1269I | GAATGC | 2 cut(s) | 35, 328 |
| MvaI | CCWGG | 3 cut(s) | 193, 283, 479 |
| MvnI | CGCG | 4 cut(s) | 291, 298, 304, 948 |
| NciI | CCSGG | 1 cut(s) | 620 |
| NcoI | CCATGG | 1 cut(s) | 555 |
| NdeII | GATC | 2 cut(s) | 307, 861 |
| NlaIII | CATG | 3 cut(s) | 524, 559, 832 |
| NlaIV | GGNNCC | 5 cut(s) | 104, 589, 778, 838, 863 |
| NruI | TCGCGA | 1 cut(s) | 291 |
| NsiI | ATGCAT | 1 cut(s) | 813 |
| NspI | RCATGY | 1 cut(s) | 832 |
| PciI | ACATGT | 1 cut(s) | 828 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 154, 295 |
| PctI | GAATGC | 2 cut(s) | 35, 328 |
| PfeI | GAWTC | 1 cut(s) | 533 |
| PfoI | TCCNGGA | 1 cut(s) | 191 |
| PinAI | ACCGGT | 1 cut(s) | 766 |
| PkrI | GCNGC | 7 cut(s) | 113, 328, 390, 397, 746, 919, 947 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| PscI | ACATGT | 1 cut(s) | 828 |
| Psp6I | CCWGG | 3 cut(s) | 191, 281, 477 |
| PspFI | CCCAGC | 2 cut(s) | 105, 561 |
| PspGI | CCWGG | 3 cut(s) | 191, 281, 477 |
| PspN4I | GGNNCC | 5 cut(s) | 104, 589, 778, 838, 863 |
| PspOMI | GGGCCC | 1 cut(s) | 102 |
| PspPI | GGNCC | 5 cut(s) | 102, 103, 559, 730, 836 |
| PsuI | RGATCY | 2 cut(s) | 307, 861 |
| RruI | TCGCGA | 1 cut(s) | 291 |
| RsaI | GTAC | 3 cut(s) | 270, 771, 959 |
| RsaNI | GTAC | 3 cut(s) | 269, 770, 958 |
| RseI | CAYNNNNRTG | 2 cut(s) | 321, 464 |
| SalI | GTCGAC | 1 cut(s) | 163 |
| SatI | GCNGC | 7 cut(s) | 112, 327, 389, 396, 745, 918, 946 |
| Sau3AI | GATC | 2 cut(s) | 307, 861 |
| Sau96I | GGNCC | 5 cut(s) | 102, 103, 559, 730, 836 |
| ScaI | AGTACT | 1 cut(s) | 959 |
| SchI | GAGTC | 1 cut(s) | 182 |
| ScrFI | CCNGG | 4 cut(s) | 193, 283, 479, 620 |
| SduI | GDGCHC | 3 cut(s) | 106, 759, 781 |
| SetI | ASST | 9 cut(s) | 52, 316, 334, 354, 366, 514, 551, 689, 934 |
| SfaNI | GCATC | 4 cut(s) | 26, 468, 798, 820 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 321, 464 |
| Sse9I | AATT | 2 cut(s) | 527, 642 |
| SspI | AATATT | 1 cut(s) | 659 |
| SspMI | CTAG | 2 cut(s) | 311, 773 |
| StyD4I | CCNGG | 4 cut(s) | 191, 281, 477, 618 |
| StyI | CCWWGG | 1 cut(s) | 555 |
| TaaI | ACNGT | 2 cut(s) | 569, 584 |
| TaqI | TCGA | 6 cut(s) | 60, 164, 232, 348, 551, 934 |
| TasI | AATT | 2 cut(s) | 527, 642 |
| TatI | WGTACW | 1 cut(s) | 957 |
| TauI | GCSGC | 3 cut(s) | 114, 391, 948 |
| TfiI | GAWTC | 1 cut(s) | 533 |
| TscAI | CASTG | 3 cut(s) | 323, 589, 709 |
| TseI | GCWGC | 4 cut(s) | 326, 395, 744, 917 |
| TspDTI | ATGAA | 1 cut(s) | 46 |
| TspGWI | ACGGA | 1 cut(s) | 150 |
| TspRI | CASTG | 3 cut(s) | 323, 589, 709 |
| XceI | RCATGY | 1 cut(s) | 832 |
| XmiI | GTMKAC | 1 cut(s) | 164 |
| XspI | CTAG | 2 cut(s) | 311, 773 |
| ZrmI | AGTACT | 1 cut(s) | 959 |
| Zsp2I | ATGCAT | 1 cut(s) | 813 |