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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 22 |
| Acc65I | GGTACC | 1 cut(s) | 415 |
| AccB1I | GGYRCC | 1 cut(s) | 415 |
| AccII | CGCG | 4 cut(s) | 141, 294, 317, 509 |
| AciI | CCGC | 4 cut(s) | 139, 292, 391, 488 |
| AclWI | GGATC | 3 cut(s) | 49, 62, 347 |
| AcoI | YGGCCR | 1 cut(s) | 108 |
| AfaI | GTAC | 2 cut(s) | 152, 417 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 479, 480 |
| AflIII | ACRYGT | 1 cut(s) | 21 |
| AgsI | TTSAA | 2 cut(s) | 254, 448 |
| AjnI | CCWGG | 1 cut(s) | 300 |
| AluBI | AGCT | 2 cut(s) | 360, 367 |
| AluI | AGCT | 2 cut(s) | 360, 367 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| AlwI | GGATC | 3 cut(s) | 49, 62, 347 |
| AoxI | GGCC | 3 cut(s) | 108, 470, 482 |
| ApaI | GGGCCC | 2 cut(s) | 474, 486 |
| Asp718I | GGTACC | 1 cut(s) | 415 |
| AspLEI | GCGC | 3 cut(s) | 296, 462, 511 |
| AspS9I | GGNCC | 4 cut(s) | 470, 471, 482, 483 |
| AsuHPI | GGTGA | 1 cut(s) | 150 |
| BaeGI | GKGCMC | 2 cut(s) | 474, 486 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanI | GGYRCC | 1 cut(s) | 415 |
| BanII | GRGCYC | 2 cut(s) | 474, 486 |
| BccI | CCATC | 1 cut(s) | 123 |
| BceAI | ACGGC | 1 cut(s) | 66 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 353, 387 |
| BciT130I | CCWGG | 1 cut(s) | 302 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BfaI | CTAG | 1 cut(s) | 512 |
| BisI | GCNGC | 1 cut(s) | 139 |
| BlsI | GCNGC | 1 cut(s) | 140 |
| BmcAI | AGTACT | 1 cut(s) | 152 |
| Bme1390I | CCNGG | 1 cut(s) | 302 |
| BmgT120I | GGNCC | 4 cut(s) | 470, 471, 482, 483 |
| BmiI | GGNNCC | 6 cut(s) | 56, 417, 472, 473, 484, 485 |
| BmrFI | CCNGG | 1 cut(s) | 302 |
| BmsI | GCATC | 2 cut(s) | 13, 195 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 479, 480 |
| Bse118I | RCCGGY | 2 cut(s) | 106, 490 |
| Bse1I | ACTGG | 2 cut(s) | 394, 443 |
| BseBI | CCWGG | 1 cut(s) | 302 |
| BseGI | GGATG | 3 cut(s) | 4, 90, 205 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 479, 480 |
| BseMII | CTCAG | 3 cut(s) | 162, 342, 370 |
| BseNI | ACTGG | 2 cut(s) | 394, 443 |
| BseSI | GKGCMC | 2 cut(s) | 474, 486 |
| BseX3I | CGGCCG | 1 cut(s) | 108 |
| Bsh1236I | CGCG | 4 cut(s) | 141, 294, 317, 509 |
| Bsh1285I | CGRYCG | 1 cut(s) | 111 |
| BshFI | GGCC | 3 cut(s) | 110, 472, 484 |
| BshNI | GGYRCC | 1 cut(s) | 415 |
| BsiEI | CGRYCG | 1 cut(s) | 111 |
| BsiSI | CCGG | 2 cut(s) | 107, 491 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 479, 480 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| BsnI | GGCC | 3 cut(s) | 110, 472, 484 |
| Bsp120I | GGGCCC | 2 cut(s) | 470, 482 |
| Bsp1286I | GDGCHC | 2 cut(s) | 474, 486 |
| Bsp143I | GATC | 4 cut(s) | 54, 112, 318, 339 |
| Bsp68I | TCGCGA | 1 cut(s) | 317 |
| BspACI | CCGC | 4 cut(s) | 139, 292, 391, 488 |
| BspANI | GGCC | 3 cut(s) | 110, 472, 484 |
| BspCNI | CTCAG | 3 cut(s) | 163, 341, 369 |
| BspFNI | CGCG | 4 cut(s) | 141, 294, 317, 509 |
| BspLI | GGNNCC | 6 cut(s) | 56, 417, 472, 473, 484, 485 |
| BspPI | GGATC | 3 cut(s) | 49, 62, 347 |
| BspT107I | GGYRCC | 1 cut(s) | 415 |
| BsrFI | RCCGGY | 2 cut(s) | 106, 490 |
| BsrI | ACTGG | 2 cut(s) | 394, 443 |
| BssAI | RCCGGY | 2 cut(s) | 106, 490 |
| BssMI | GATC | 4 cut(s) | 54, 112, 318, 339 |
| Bst2UI | CCWGG | 1 cut(s) | 302 |
| Bst4CI | ACNGT | 1 cut(s) | 420 |
| BstC8I | GCNNGC | 5 cut(s) | 298, 391, 492, 503, 507 |
| BstDEI | CTNAG | 4 cut(s) | 121, 171, 328, 356 |
| BstF5I | GGATG | 3 cut(s) | 4, 90, 205 |
| BstFNI | CGCG | 4 cut(s) | 141, 294, 317, 509 |
| BstHHI | GCGC | 3 cut(s) | 296, 462, 511 |
| BstKTI | GATC | 4 cut(s) | 57, 115, 321, 342 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstMBI | GATC | 4 cut(s) | 54, 112, 318, 339 |
| BstMCI | CGRYCG | 1 cut(s) | 111 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 302 |
| BstNI | CCWGG | 1 cut(s) | 302 |
| BstNSI | RCATGY | 2 cut(s) | 25, 505 |
| BstSCI | CCNGG | 1 cut(s) | 300 |
| BstSLI | GKGCMC | 2 cut(s) | 474, 486 |
| BstUI | CGCG | 4 cut(s) | 141, 294, 317, 509 |
| BstX2I | RGATCY | 2 cut(s) | 54, 339 |
| BstYI | RGATCY | 2 cut(s) | 54, 339 |
| BstZI | CGGCCG | 1 cut(s) | 108 |
| BsuRI | GGCC | 3 cut(s) | 110, 472, 484 |
| BtsCI | GGATG | 3 cut(s) | 4, 90, 205 |
| BtuMI | TCGCGA | 1 cut(s) | 317 |
| Cac8I | GCNNGC | 5 cut(s) | 298, 391, 492, 503, 507 |
| CfoI | GCGC | 3 cut(s) | 296, 462, 511 |
| Cfr10I | RCCGGY | 2 cut(s) | 106, 490 |
| Cfr13I | GGNCC | 4 cut(s) | 470, 471, 482, 483 |
| Csp6I | GTAC | 2 cut(s) | 151, 416 |
| CviAII | CATG | 2 cut(s) | 22, 502 |
| CviJI | RGCY | 8 cut(s) | 30, 110, 138, 305, 360, 367, 472, 484 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 110, 138, 305, 360, 367, 472, 484 |
| CviQI | GTAC | 2 cut(s) | 151, 416 |
| DdeI | CTNAG | 4 cut(s) | 121, 171, 328, 356 |
| DpnI | GATC | 4 cut(s) | 56, 114, 320, 341 |
| DpnII | GATC | 4 cut(s) | 54, 112, 318, 339 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 22 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 22 |
| EaeI | YGGCCR | 1 cut(s) | 108 |
| EagI | CGGCCG | 1 cut(s) | 108 |
| EclXI | CGGCCG | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 2 cut(s) | 474, 486 |
| Eco32I | GATATC | 1 cut(s) | 334 |
| Eco52I | CGGCCG | 1 cut(s) | 108 |
| EcoO109I | RGGNCCY | 2 cut(s) | 471, 483 |
| EcoRII | CCWGG | 1 cut(s) | 300 |
| EcoRV | GATATC | 1 cut(s) | 334 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 474, 486 |
| FaeI | CATG | 2 cut(s) | 25, 505 |
| FatI | CATG | 2 cut(s) | 21, 501 |
| FauI | CCCGC | 2 cut(s) | 398, 495 |
| Fnu4HI | GCNGC | 1 cut(s) | 139 |
| FokI | GGATG | 2 cut(s) | 77, 212 |
| FriOI | GRGCYC | 2 cut(s) | 474, 486 |
| Fsp4HI | GCNGC | 1 cut(s) | 139 |
| FspBI | CTAG | 1 cut(s) | 512 |
| GlaI | GCGC | 3 cut(s) | 295, 461, 510 |
| GluI | GCNGC | 1 cut(s) | 139 |
| HaeIII | GGCC | 3 cut(s) | 110, 472, 484 |
| HapII | CCGG | 2 cut(s) | 107, 491 |
| HhaI | GCGC | 3 cut(s) | 296, 462, 511 |
| Hin1II | CATG | 2 cut(s) | 25, 505 |
| Hin6I | GCGC | 3 cut(s) | 294, 460, 509 |
| HinP1I | GCGC | 3 cut(s) | 294, 460, 509 |
| HinfI | GANTC | 2 cut(s) | 40, 237 |
| HpaII | CCGG | 2 cut(s) | 107, 491 |
| HphI | GGTGA | 1 cut(s) | 150 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 331 |
| Hpy188III | TCNNGA | 8 cut(s) | 13, 37, 44, 52, 58, 269, 316, 337 |
| Hpy99I | CGWCG | 2 cut(s) | 275, 350 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 1 cut(s) | 420 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 302 |
| HpyF3I | CTNAG | 4 cut(s) | 121, 171, 328, 356 |
| Hsp92II | CATG | 2 cut(s) | 25, 505 |
| HspAI | GCGC | 3 cut(s) | 294, 460, 509 |
| KpnI | GGTACC | 1 cut(s) | 419 |
| KroI | GCCGGC | 1 cut(s) | 490 |
| KroNI | GCCGGC | 1 cut(s) | 492 |
| Kzo9I | GATC | 4 cut(s) | 54, 112, 318, 339 |
| LweI | GCATC | 2 cut(s) | 13, 195 |
| MaeI | CTAG | 1 cut(s) | 512 |
| MalI | GATC | 4 cut(s) | 56, 114, 320, 341 |
| MboI | GATC | 4 cut(s) | 54, 112, 318, 339 |
| MboII | GAAGA | 4 cut(s) | 67, 246, 257, 362 |
| MfeI | CAATTG | 1 cut(s) | 410 |
| MflI | RGATCY | 2 cut(s) | 54, 339 |
| MhlI | GDGCHC | 2 cut(s) | 474, 486 |
| MluCI | AATT | 2 cut(s) | 222, 410 |
| MnlI | CCTC | 4 cut(s) | 288, 323, 463, 487 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroNI | GCCGGC | 1 cut(s) | 490 |
| MspI | CCGG | 2 cut(s) | 107, 491 |
| MspR9I | CCNGG | 1 cut(s) | 302 |
| MunI | CAATTG | 1 cut(s) | 410 |
| MvaI | CCWGG | 1 cut(s) | 302 |
| MvnI | CGCG | 4 cut(s) | 141, 294, 317, 509 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 302 |
| NaeI | GCCGGC | 1 cut(s) | 492 |
| NdeII | GATC | 4 cut(s) | 54, 112, 318, 339 |
| NgoMIV | GCCGGC | 1 cut(s) | 490 |
| NlaIII | CATG | 2 cut(s) | 25, 505 |
| NlaIV | GGNNCC | 6 cut(s) | 56, 417, 472, 473, 484, 485 |
| NruI | TCGCGA | 1 cut(s) | 317 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 25, 505 |
| PaeI | GCATGC | 1 cut(s) | 505 |
| PciI | ACATGT | 1 cut(s) | 21 |
| PdiI | GCCGGC | 1 cut(s) | 492 |
| PfeI | GAWTC | 2 cut(s) | 40, 237 |
| PkrI | GCNGC | 1 cut(s) | 140 |
| PscI | ACATGT | 1 cut(s) | 21 |
| Psp6I | CCWGG | 1 cut(s) | 300 |
| PspGI | CCWGG | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 6 cut(s) | 56, 417, 472, 473, 484, 485 |
| PspOMI | GGGCCC | 2 cut(s) | 470, 482 |
| PspPI | GGNCC | 4 cut(s) | 470, 471, 482, 483 |
| PsuI | RGATCY | 2 cut(s) | 54, 339 |
| RruI | TCGCGA | 1 cut(s) | 317 |
| RsaI | GTAC | 2 cut(s) | 152, 417 |
| RsaNI | GTAC | 2 cut(s) | 151, 416 |
| SatI | GCNGC | 1 cut(s) | 139 |
| Sau3AI | GATC | 4 cut(s) | 54, 112, 318, 339 |
| Sau96I | GGNCC | 4 cut(s) | 470, 471, 482, 483 |
| ScaI | AGTACT | 1 cut(s) | 152 |
| ScrFI | CCNGG | 1 cut(s) | 302 |
| SduI | GDGCHC | 2 cut(s) | 474, 486 |
| SetI | ASST | 4 cut(s) | 127, 362, 369, 455 |
| SfaNI | GCATC | 2 cut(s) | 13, 195 |
| SphI | GCATGC | 1 cut(s) | 505 |
| Sse9I | AATT | 2 cut(s) | 222, 410 |
| SsiI | CCGC | 4 cut(s) | 139, 292, 391, 488 |
| SspMI | CTAG | 1 cut(s) | 512 |
| StyD4I | CCNGG | 1 cut(s) | 300 |
| TaaI | ACNGT | 1 cut(s) | 420 |
| TaqI | TCGA | 3 cut(s) | 12, 127, 348 |
| TaqII | GACCGA | 1 cut(s) | 389 |
| TasI | AATT | 2 cut(s) | 222, 410 |
| TatI | WGTACW | 1 cut(s) | 150 |
| TauI | GCSGC | 1 cut(s) | 141 |
| TfiI | GAWTC | 2 cut(s) | 40, 237 |
| TspDTI | ATGAA | 1 cut(s) | 171 |
| TspGWI | ACGGA | 1 cut(s) | 334 |
| XceI | RCATGY | 2 cut(s) | 25, 505 |
| XspI | CTAG | 1 cut(s) | 512 |
| ZrmI | AGTACT | 1 cut(s) | 152 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |