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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 451 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 414 |
| Acc36I | ACCTGC | 3 cut(s) | 190, 451, 574 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 748 |
| AccII | CGCG | 7 cut(s) | 239, 480, 566, 572, 603, 633, 660 |
| AccIII | TCCGGA | 2 cut(s) | 10, 70 |
| AciI | CCGC | 8 cut(s) | 153, 239, 273, 478, 564, 570, 603, 923 |
| AclI | AACGTT | 2 cut(s) | 111, 306 |
| AclWI | GGATC | 6 cut(s) | 23, 36, 68, 81, 134, 683 |
| AcsI | RAATTY | 1 cut(s) | 503 |
| AcuI | CTGAAG | 1 cut(s) | 516 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 203, 706, 748 |
| AgeI | ACCGGT | 1 cut(s) | 232 |
| AgsI | TTSAA | 1 cut(s) | 92 |
| AjnI | CCWGG | 4 cut(s) | 189, 370, 588, 705 |
| AluBI | AGCT | 6 cut(s) | 452, 500, 523, 578, 869, 885 |
| AluI | AGCT | 6 cut(s) | 452, 500, 523, 578, 869, 885 |
| Alw26I | GTCTC | 2 cut(s) | 400, 825 |
| AlwI | GGATC | 6 cut(s) | 23, 36, 68, 81, 134, 683 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 143 |
| Ama87I | CYCGRG | 1 cut(s) | 317 |
| Aor13HI | TCCGGA | 2 cut(s) | 10, 70 |
| AoxI | GGCC | 4 cut(s) | 240, 604, 738, 759 |
| ApeKI | GCWGC | 5 cut(s) | 38, 275, 803, 869, 872 |
| ApoI | RAATTY | 1 cut(s) | 503 |
| AseI | ATTAAT | 1 cut(s) | 549 |
| AsiGI | ACCGGT | 1 cut(s) | 232 |
| AspLEI | GCGC | 4 cut(s) | 55, 209, 440, 574 |
| AspS9I | GGNCC | 8 cut(s) | 241, 416, 586, 667, 696, 709, 739, 760 |
| AsuC2I | CCSGG | 2 cut(s) | 435, 539 |
| AsuII | TTCGAA | 1 cut(s) | 810 |
| AsuNHI | GCTAGC | 1 cut(s) | 881 |
| AvaI | CYCGRG | 1 cut(s) | 317 |
| AvaII | GGWCC | 5 cut(s) | 416, 586, 667, 696, 709 |
| AxyI | CCTNAGG | 3 cut(s) | 24, 258, 640 |
| BamHI | GGATCC | 2 cut(s) | 28, 73 |
| BanII | GRGCYC | 2 cut(s) | 99, 153 |
| BauI | CACGAG | 1 cut(s) | 842 |
| BbvCI | CCTCAGC | 1 cut(s) | 120 |
| BbvI | GCAGC | 5 cut(s) | 25, 262, 815, 856, 859 |
| BccI | CCATC | 2 cut(s) | 254, 460 |
| BceAI | ACGGC | 2 cut(s) | 263, 774 |
| BciT130I | CCWGG | 4 cut(s) | 191, 372, 590, 707 |
| BcnI | CCSGG | 2 cut(s) | 435, 539 |
| BcoDI | GTCTC | 2 cut(s) | 400, 825 |
| BfaI | CTAG | 3 cut(s) | 579, 882, 893 |
| BfmI | CTRYAG | 1 cut(s) | 401 |
| BfoI | RGCGCY | 1 cut(s) | 210 |
| BfuAI | ACCTGC | 3 cut(s) | 190, 451, 574 |
| BisI | GCNGC | 9 cut(s) | 39, 240, 273, 276, 478, 604, 804, 870, 873 |
| BlpI | GCTNAGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 9 cut(s) | 40, 241, 274, 277, 479, 605, 805, 871, 874 |
| Bme1390I | CCNGG | 6 cut(s) | 191, 372, 435, 539, 590, 707 |
| Bme18I | GGWCC | 5 cut(s) | 416, 586, 667, 696, 709 |
| BmeT110I | CYCGRG | 1 cut(s) | 317 |
| BmgT120I | GGNCC | 8 cut(s) | 241, 416, 586, 667, 696, 709, 739, 760 |
| BmrFI | CCNGG | 6 cut(s) | 191, 372, 435, 539, 590, 707 |
| BmrI | ACTGGG | 1 cut(s) | 736 |
| BmsI | GCATC | 3 cut(s) | 4, 277, 635 |
| BmtI | GCTAGC | 1 cut(s) | 885 |
| BmuI | ACTGGG | 1 cut(s) | 736 |
| Bpu10I | CCTNAGC | 2 cut(s) | 120, 799 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 147 |
| Bpu14I | TTCGAA | 1 cut(s) | 810 |
| BpuEI | CTTGAG | 4 cut(s) | 159, 438, 788, 819 |
| BpuMI | CCSGG | 2 cut(s) | 435, 539 |
| BsaJI | CCNNGG | 3 cut(s) | 189, 370, 735 |
| BsaWI | WCCGGW | 4 cut(s) | 10, 70, 226, 232 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 519, 549 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 203, 706, 748 |
| Bse118I | RCCGGY | 1 cut(s) | 232 |
| Bse1I | ACTGG | 1 cut(s) | 742 |
| Bse21I | CCTNAGG | 3 cut(s) | 24, 258, 640 |
| BseAI | TCCGGA | 2 cut(s) | 10, 70 |
| BseBI | CCWGG | 4 cut(s) | 191, 372, 590, 707 |
| BseDI | CCNNGG | 3 cut(s) | 189, 370, 735 |
| BseGI | GGATG | 2 cut(s) | 19, 702 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 203, 706, 748 |
| BseMII | CTCAG | 6 cut(s) | 15, 111, 138, 272, 797, 836 |
| BseNI | ACTGG | 1 cut(s) | 742 |
| BseRI | GAGGAG | 3 cut(s) | 137, 303, 791 |
| BseXI | GCAGC | 5 cut(s) | 25, 262, 815, 856, 859 |
| Bsh1236I | CGCG | 7 cut(s) | 239, 480, 566, 572, 603, 633, 660 |
| Bsh1285I | CGRYCG | 5 cut(s) | 36, 237, 564, 570, 649 |
| BshFI | GGCC | 4 cut(s) | 242, 606, 740, 761 |
| BshTI | ACCGGT | 1 cut(s) | 232 |
| BsiEI | CGRYCG | 5 cut(s) | 36, 237, 564, 570, 649 |
| BsiHKCI | CYCGRG | 1 cut(s) | 317 |
| BsiSI | CCGG | 6 cut(s) | 11, 71, 227, 233, 434, 539 |
| BslFI | GGGAC | 3 cut(s) | 251, 407, 680 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 203, 706, 748 |
| BsmAI | GTCTC | 2 cut(s) | 400, 825 |
| BsmFI | GGGAC | 3 cut(s) | 251, 407, 680 |
| BsnI | GGCC | 4 cut(s) | 242, 606, 740, 761 |
| BsoBI | CYCGRG | 1 cut(s) | 317 |
| Bsp119I | TTCGAA | 1 cut(s) | 810 |
| Bsp1286I | GDGCHC | 2 cut(s) | 99, 153 |
| Bsp13I | TCCGGA | 2 cut(s) | 10, 70 |
| Bsp143I | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 147 |
| Bsp68I | TCGCGA | 1 cut(s) | 633 |
| BspACI | CCGC | 8 cut(s) | 153, 239, 273, 478, 564, 570, 603, 923 |
| BspANI | GGCC | 4 cut(s) | 242, 606, 740, 761 |
| BspCNI | CTCAG | 6 cut(s) | 16, 112, 139, 271, 796, 835 |
| BspEI | TCCGGA | 2 cut(s) | 10, 70 |
| BspFNI | CGCG | 7 cut(s) | 239, 480, 566, 572, 603, 633, 660 |
| BspMAI | CTGCAG | 1 cut(s) | 405 |
| BspMI | ACCTGC | 3 cut(s) | 190, 451, 574 |
| BspOI | GCTAGC | 1 cut(s) | 885 |
| BspPI | GGATC | 6 cut(s) | 23, 36, 68, 81, 134, 683 |
| BspT104I | TTCGAA | 1 cut(s) | 810 |
| BsrFI | RCCGGY | 1 cut(s) | 232 |
| BsrI | ACTGG | 1 cut(s) | 742 |
| BssAI | RCCGGY | 1 cut(s) | 232 |
| BssECI | CCNNGG | 3 cut(s) | 189, 370, 735 |
| BssMI | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| BssSI | CACGAG | 1 cut(s) | 842 |
| BssT1I | CCWWGG | 1 cut(s) | 735 |
| Bst2BI | CACGAG | 1 cut(s) | 842 |
| Bst2UI | CCWGG | 4 cut(s) | 191, 372, 590, 707 |
| Bst4CI | ACNGT | 2 cut(s) | 48, 398 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 143 |
| BstBI | TTCGAA | 1 cut(s) | 810 |
| BstC8I | GCNNGC | 3 cut(s) | 153, 576, 883 |
| BstDEI | CTNAG | 8 cut(s) | 24, 120, 147, 258, 640, 783, 799, 822 |
| BstF5I | GGATG | 2 cut(s) | 19, 702 |
| BstFNI | CGCG | 7 cut(s) | 239, 480, 566, 572, 603, 633, 660 |
| BstH2I | RGCGCY | 1 cut(s) | 210 |
| BstHHI | GCGC | 4 cut(s) | 55, 209, 440, 574 |
| BstKTI | GATC | 6 cut(s) | 31, 36, 76, 142, 649, 678 |
| BstMAI | GTCTC | 2 cut(s) | 400, 825 |
| BstMBI | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| BstMCI | CGRYCG | 5 cut(s) | 36, 237, 564, 570, 649 |
| BstNI | CCWGG | 4 cut(s) | 191, 372, 590, 707 |
| BstNSI | RCATGY | 1 cut(s) | 59 |
| BstSCI | CCNGG | 6 cut(s) | 189, 370, 433, 537, 588, 705 |
| BstSFI | CTRYAG | 1 cut(s) | 401 |
| BstUI | CGCG | 7 cut(s) | 239, 480, 566, 572, 603, 633, 660 |
| BstV1I | GCAGC | 5 cut(s) | 25, 262, 815, 856, 859 |
| BstX2I | RGATCY | 4 cut(s) | 28, 73, 139, 675 |
| BstYI | RGATCY | 4 cut(s) | 28, 73, 139, 675 |
| Bsu36I | CCTNAGG | 3 cut(s) | 24, 258, 640 |
| BsuRI | GGCC | 4 cut(s) | 242, 606, 740, 761 |
| BtgZI | GCGATG | 1 cut(s) | 830 |
| BtsCI | GGATG | 2 cut(s) | 19, 702 |
| BtsIMutI | CAGTG | 1 cut(s) | 492 |
| BtuMI | TCGCGA | 1 cut(s) | 633 |
| BveI | ACCTGC | 3 cut(s) | 190, 451, 574 |
| Cac8I | GCNNGC | 3 cut(s) | 153, 576, 883 |
| CaiI | CAGNNNCTG | 1 cut(s) | 143 |
| CfoI | GCGC | 4 cut(s) | 55, 209, 440, 574 |
| Cfr10I | RCCGGY | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 8 cut(s) | 241, 416, 586, 667, 696, 709, 739, 760 |
| CseI | GACGC | 2 cut(s) | 649, 887 |
| CspAI | ACCGGT | 1 cut(s) | 232 |
| CviAII | CATG | 2 cut(s) | 56, 920 |
| DdeI | CTNAG | 8 cut(s) | 24, 120, 147, 258, 640, 783, 799, 822 |
| DpnI | GATC | 6 cut(s) | 30, 35, 75, 141, 648, 677 |
| DpnII | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 414 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 414 |
| Eco130I | CCWWGG | 1 cut(s) | 735 |
| Eco24I | GRGCYC | 2 cut(s) | 99, 153 |
| Eco47I | GGWCC | 5 cut(s) | 416, 586, 667, 696, 709 |
| Eco57I | CTGAAG | 1 cut(s) | 516 |
| Eco81I | CCTNAGG | 3 cut(s) | 24, 258, 640 |
| Eco88I | CYCGRG | 1 cut(s) | 317 |
| EcoO109I | RGGNCCY | 3 cut(s) | 416, 667, 709 |
| EcoRI | GAATTC | 1 cut(s) | 503 |
| EcoRII | CCWGG | 4 cut(s) | 189, 370, 588, 705 |
| EcoT14I | CCWWGG | 1 cut(s) | 735 |
| EcoT38I | GRGCYC | 2 cut(s) | 99, 153 |
| ErhI | CCWWGG | 1 cut(s) | 735 |
| FaeI | CATG | 2 cut(s) | 59, 923 |
| FaiI | YATR | 5 cut(s) | 57, 215, 517, 519, 921 |
| FaqI | GGGAC | 3 cut(s) | 251, 407, 680 |
| FatI | CATG | 2 cut(s) | 55, 919 |
| FauI | CCCGC | 2 cut(s) | 160, 916 |
| Fnu4HI | GCNGC | 9 cut(s) | 39, 240, 273, 276, 478, 604, 804, 870, 873 |
| FokI | GGATG | 2 cut(s) | 26, 689 |
| FriOI | GRGCYC | 2 cut(s) | 99, 153 |
| Fsp4HI | GCNGC | 9 cut(s) | 39, 240, 273, 276, 478, 604, 804, 870, 873 |
| FspBI | CTAG | 3 cut(s) | 579, 882, 893 |
| GlaI | GCGC | 4 cut(s) | 54, 208, 439, 573 |
| GluI | GCNGC | 9 cut(s) | 39, 240, 273, 276, 478, 604, 804, 870, 873 |
| HaeII | RGCGCY | 1 cut(s) | 210 |
| HaeIII | GGCC | 4 cut(s) | 242, 606, 740, 761 |
| HapII | CCGG | 6 cut(s) | 11, 71, 227, 233, 434, 539 |
| HgaI | GACGC | 2 cut(s) | 649, 887 |
| HhaI | GCGC | 4 cut(s) | 55, 209, 440, 574 |
| Hin1II | CATG | 2 cut(s) | 59, 923 |
| Hin6I | GCGC | 4 cut(s) | 53, 207, 438, 572 |
| HinP1I | GCGC | 4 cut(s) | 53, 207, 438, 572 |
| HinfI | GANTC | 3 cut(s) | 375, 635, 655 |
| HpaII | CCGG | 6 cut(s) | 11, 71, 227, 233, 434, 539 |
| Hpy166II | GTNNAC | 1 cut(s) | 932 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 696, 786, 825 |
| Hpy8I | GTNNAC | 1 cut(s) | 932 |
| HpyAV | CCTTC | 3 cut(s) | 17, 701, 817 |
| HpyCH4III | ACNGT | 2 cut(s) | 48, 398 |
| HpyCH4IV | ACGT | 2 cut(s) | 111, 306 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 17, 137, 403, 611 |
| HpyF3I | CTNAG | 8 cut(s) | 24, 120, 147, 258, 640, 783, 799, 822 |
| HpySE526I | ACGT | 2 cut(s) | 111, 306 |
| Hsp92II | CATG | 2 cut(s) | 59, 923 |
| HspAI | GCGC | 4 cut(s) | 53, 207, 438, 572 |
| Kpn2I | TCCGGA | 2 cut(s) | 10, 70 |
| Kzo9I | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| LmnI | GCTCC | 3 cut(s) | 46, 370, 778 |
| Lsp1109I | GCAGC | 5 cut(s) | 25, 262, 815, 856, 859 |
| LweI | GCATC | 3 cut(s) | 4, 277, 635 |
| MaeI | CTAG | 3 cut(s) | 579, 882, 893 |
| MaeII | ACGT | 2 cut(s) | 111, 306 |
| MaeIII | GTNAC | 3 cut(s) | 107, 376, 754 |
| MalI | GATC | 6 cut(s) | 30, 35, 75, 141, 648, 677 |
| MboI | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| MflI | RGATCY | 4 cut(s) | 28, 73, 139, 675 |
| MhlI | GDGCHC | 2 cut(s) | 99, 153 |
| MluCI | AATT | 1 cut(s) | 503 |
| MlyI | GAGTC | 2 cut(s) | 384, 629 |
| MroI | TCCGGA | 2 cut(s) | 10, 70 |
| MseI | TTAA | 1 cut(s) | 549 |
| MspA1I | CMGCKG | 2 cut(s) | 155, 275 |
| MspI | CCGG | 6 cut(s) | 11, 71, 227, 233, 434, 539 |
| MspR9I | CCNGG | 6 cut(s) | 191, 372, 435, 539, 590, 707 |
| MvaI | CCWGG | 4 cut(s) | 191, 372, 590, 707 |
| MvnI | CGCG | 7 cut(s) | 239, 480, 566, 572, 603, 633, 660 |
| NciI | CCSGG | 2 cut(s) | 435, 539 |
| NdeII | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| NheI | GCTAGC | 1 cut(s) | 881 |
| NlaIII | CATG | 2 cut(s) | 59, 923 |
| NmeAIII | GCCGAG | 1 cut(s) | 129 |
| NmuCI | GTSAC | 2 cut(s) | 376, 754 |
| NruI | TCGCGA | 1 cut(s) | 633 |
| NspI | RCATGY | 1 cut(s) | 59 |
| NspV | TTCGAA | 1 cut(s) | 810 |
| PaqCI | CACCTGC | 1 cut(s) | 451 |
| PfeI | GAWTC | 1 cut(s) | 655 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 748 |
| PfoI | TCCNGGA | 1 cut(s) | 705 |
| PinAI | ACCGGT | 1 cut(s) | 232 |
| PkrI | GCNGC | 9 cut(s) | 40, 241, 274, 277, 479, 605, 805, 871, 874 |
| Ple19I | CGATCG | 2 cut(s) | 36, 649 |
| PleI | GAGTC | 2 cut(s) | 383, 629 |
| PpsI | GAGTC | 2 cut(s) | 383, 629 |
| PpuMI | RGGWCCY | 3 cut(s) | 416, 667, 709 |
| PshBI | ATTAAT | 1 cut(s) | 549 |
| Psp1406I | AACGTT | 2 cut(s) | 111, 306 |
| Psp5II | RGGWCCY | 3 cut(s) | 416, 667, 709 |
| Psp6I | CCWGG | 4 cut(s) | 189, 370, 588, 705 |
| PspGI | CCWGG | 4 cut(s) | 189, 370, 588, 705 |
| PspPI | GGNCC | 8 cut(s) | 241, 416, 586, 667, 696, 709, 739, 760 |
| PspPPI | RGGWCCY | 3 cut(s) | 416, 667, 709 |
| PstI | CTGCAG | 1 cut(s) | 405 |
| PstNI | CAGNNNCTG | 1 cut(s) | 143 |
| PsuI | RGATCY | 4 cut(s) | 28, 73, 139, 675 |
| PvuI | CGATCG | 2 cut(s) | 36, 649 |
| RruI | TCGCGA | 1 cut(s) | 633 |
| SaqAI | TTAA | 1 cut(s) | 549 |
| SatI | GCNGC | 9 cut(s) | 39, 240, 273, 276, 478, 604, 804, 870, 873 |
| Sau3AI | GATC | 6 cut(s) | 28, 33, 73, 139, 646, 675 |
| Sau96I | GGNCC | 8 cut(s) | 241, 416, 586, 667, 696, 709, 739, 760 |
| SchI | GAGTC | 2 cut(s) | 384, 629 |
| ScrFI | CCNGG | 6 cut(s) | 191, 372, 435, 539, 590, 707 |
| SduI | GDGCHC | 2 cut(s) | 99, 153 |
| SfaNI | GCATC | 3 cut(s) | 4, 277, 635 |
| SfcI | CTRYAG | 1 cut(s) | 401 |
| SfuI | TTCGAA | 1 cut(s) | 810 |
| SinI | GGWCC | 5 cut(s) | 416, 586, 667, 696, 709 |
| SmlI | CTYRAG | 4 cut(s) | 174, 453, 767, 834 |
| SmoI | CTYRAG | 4 cut(s) | 174, 453, 767, 834 |
| Sse9I | AATT | 1 cut(s) | 503 |
| SsiI | CCGC | 8 cut(s) | 153, 239, 273, 478, 564, 570, 603, 923 |
| SspMI | CTAG | 3 cut(s) | 579, 882, 893 |
| StyD4I | CCNGG | 6 cut(s) | 189, 370, 433, 537, 588, 705 |
| StyI | CCWWGG | 1 cut(s) | 735 |
| TaaI | ACNGT | 2 cut(s) | 48, 398 |
| TaiI | ACGT | 2 cut(s) | 114, 309 |
| TaqI | TCGA | 6 cut(s) | 252, 357, 649, 729, 810, 853 |
| TasI | AATT | 1 cut(s) | 503 |
| TauI | GCSGC | 4 cut(s) | 242, 275, 480, 606 |
| TfiI | GAWTC | 1 cut(s) | 655 |
| Tru1I | TTAA | 1 cut(s) | 549 |
| Tru9I | TTAA | 1 cut(s) | 549 |
| TscAI | CASTG | 1 cut(s) | 499 |
| TseFI | GTSAC | 2 cut(s) | 376, 754 |
| TseI | GCWGC | 5 cut(s) | 38, 275, 803, 869, 872 |
| Tsp45I | GTSAC | 2 cut(s) | 376, 754 |
| TspDTI | ATGAA | 2 cut(s) | 399, 912 |
| TspGWI | ACGGA | 2 cut(s) | 559, 688 |
| TspRI | CASTG | 1 cut(s) | 499 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 748 |
| VpaK11BI | GGWCC | 5 cut(s) | 416, 586, 667, 696, 709 |
| VspI | ATTAAT | 1 cut(s) | 549 |
| XapI | RAATTY | 1 cut(s) | 503 |
| XbaI | TCTAGA | 1 cut(s) | 892 |
| XceI | RCATGY | 1 cut(s) | 59 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 742 |
| XspI | CTAG | 3 cut(s) | 579, 882, 893 |