Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 847 |
| AccB1I | GGYRCC | 1 cut(s) | 847 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 475 |
| AccI | GTMKAC | 1 cut(s) | 40 |
| AccII | CGCG | 5 cut(s) | 145, 438, 495, 652, 863 |
| AciI | CCGC | 6 cut(s) | 132, 143, 145, 291, 493, 602 |
| AclWI | GGATC | 4 cut(s) | 388, 401, 403, 416 |
| AcoI | YGGCCR | 2 cut(s) | 70, 462 |
| AcsI | RAATTY | 1 cut(s) | 218 |
| AcyI | GRCGYC | 1 cut(s) | 900 |
| AfaI | GTAC | 7 cut(s) | 206, 232, 344, 506, 545, 579, 849 |
| AfeI | AGCGCT | 1 cut(s) | 124 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 50, 144, 320, 475, 833, 834, 909 |
| AgsI | TTSAA | 1 cut(s) | 608 |
| AjnI | CCWGG | 4 cut(s) | 345, 396, 622, 791 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 405, 437 |
| AluBI | AGCT | 2 cut(s) | 304, 721 |
| AluI | AGCT | 2 cut(s) | 304, 721 |
| Alw21I | GWGCWC | 1 cut(s) | 174 |
| Alw26I | GTCTC | 1 cut(s) | 362 |
| AlwI | GGATC | 4 cut(s) | 388, 401, 403, 416 |
| Ama87I | CYCGRG | 1 cut(s) | 305 |
| Aor51HI | AGCGCT | 1 cut(s) | 124 |
| AoxI | GGCC | 9 cut(s) | 70, 105, 276, 348, 382, 462, 754, 824, 836 |
| ApaI | GGGCCC | 1 cut(s) | 828 |
| ApeKI | GCWGC | 3 cut(s) | 120, 451, 698 |
| ApoI | RAATTY | 1 cut(s) | 218 |
| Asp718I | GGTACC | 1 cut(s) | 847 |
| AspLEI | GCGC | 4 cut(s) | 125, 629, 654, 865 |
| AspS9I | GGNCC | 6 cut(s) | 106, 277, 383, 824, 825, 836 |
| AvaI | CYCGRG | 1 cut(s) | 305 |
| BaeGI | GKGCMC | 1 cut(s) | 828 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BamHI | GGATCC | 2 cut(s) | 393, 408 |
| BanI | GGYRCC | 1 cut(s) | 847 |
| BanII | GRGCYC | 2 cut(s) | 328, 828 |
| Bbv12I | GWGCWC | 1 cut(s) | 174 |
| BbvI | GCAGC | 3 cut(s) | 132, 438, 685 |
| BccI | CCATC | 2 cut(s) | 44, 902 |
| BceAI | ACGGC | 3 cut(s) | 291, 304, 887 |
| BciT130I | CCWGG | 4 cut(s) | 347, 398, 624, 793 |
| BciVI | GTATCC | 1 cut(s) | 917 |
| BcoDI | GTCTC | 1 cut(s) | 362 |
| BfaI | CTAG | 2 cut(s) | 372, 928 |
| BfoI | RGCGCY | 2 cut(s) | 126, 630 |
| BfuI | GTATCC | 1 cut(s) | 917 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 753 |
| BisI | GCNGC | 6 cut(s) | 121, 133, 292, 452, 493, 699 |
| BlpI | GCTNAGC | 1 cut(s) | 488 |
| BlsI | GCNGC | 6 cut(s) | 122, 134, 293, 453, 494, 700 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| Bme1390I | CCNGG | 4 cut(s) | 347, 398, 624, 793 |
| BmeT110I | CYCGRG | 1 cut(s) | 305 |
| BmgT120I | GGNCC | 6 cut(s) | 106, 277, 383, 824, 825, 836 |
| BmiI | GGNNCC | 7 cut(s) | 136, 325, 395, 410, 826, 827, 849 |
| BmrFI | CCNGG | 4 cut(s) | 347, 398, 624, 793 |
| BmsI | GCATC | 4 cut(s) | 367, 384, 549, 778 |
| Bpu10I | CCTNAGC | 1 cut(s) | 888 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 488 |
| BsaHI | GRCGYC | 1 cut(s) | 900 |
| BsaJI | CCNNGG | 3 cut(s) | 102, 143, 903 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 659, 689 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 50, 144, 320, 475, 833, 834, 909 |
| Bse118I | RCCGGY | 3 cut(s) | 182, 460, 844 |
| Bse1I | ACTGG | 1 cut(s) | 212 |
| Bse3DI | GCAATG | 1 cut(s) | 301 |
| BseBI | CCWGG | 4 cut(s) | 347, 398, 624, 793 |
| BseDI | CCNNGG | 3 cut(s) | 102, 143, 903 |
| BseGI | GGATG | 3 cut(s) | 559, 759, 913 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 50, 144, 320, 475, 833, 834, 909 |
| BseMI | GCAATG | 1 cut(s) | 301 |
| BseMII | CTCAG | 2 cut(s) | 502, 906 |
| BseNI | ACTGG | 1 cut(s) | 212 |
| BseRI | GAGGAG | 2 cut(s) | 504, 621 |
| BseSI | GKGCMC | 1 cut(s) | 828 |
| BseX3I | CGGCCG | 1 cut(s) | 462 |
| BseXI | GCAGC | 3 cut(s) | 132, 438, 685 |
| Bsh1236I | CGCG | 5 cut(s) | 145, 438, 495, 652, 863 |
| Bsh1285I | CGRYCG | 2 cut(s) | 183, 465 |
| BshFI | GGCC | 9 cut(s) | 72, 107, 278, 350, 384, 464, 756, 826, 838 |
| BshNI | GGYRCC | 1 cut(s) | 847 |
| BsiEI | CGRYCG | 2 cut(s) | 183, 465 |
| BsiHKAI | GWGCWC | 1 cut(s) | 174 |
| BsiHKCI | CYCGRG | 1 cut(s) | 305 |
| BsiSI | CCGG | 3 cut(s) | 183, 461, 845 |
| BslFI | GGGAC | 2 cut(s) | 71, 925 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 50, 144, 320, 475, 833, 834, 909 |
| BsmAI | GTCTC | 1 cut(s) | 362 |
| BsmFI | GGGAC | 2 cut(s) | 71, 925 |
| BsmI | GAATGC | 1 cut(s) | 533 |
| BsnI | GGCC | 9 cut(s) | 72, 107, 278, 350, 384, 464, 756, 826, 838 |
| BsoBI | CYCGRG | 1 cut(s) | 305 |
| Bsp120I | GGGCCC | 1 cut(s) | 824 |
| Bsp1286I | GDGCHC | 3 cut(s) | 174, 328, 828 |
| Bsp143I | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 488 |
| Bsp19I | CCATGG | 1 cut(s) | 102 |
| Bsp68I | TCGCGA | 1 cut(s) | 438 |
| BspACI | CCGC | 6 cut(s) | 132, 143, 145, 291, 493, 602 |
| BspANI | GGCC | 9 cut(s) | 72, 107, 278, 350, 384, 464, 756, 826, 838 |
| BspCNI | CTCAG | 2 cut(s) | 501, 907 |
| BspFNI | CGCG | 5 cut(s) | 145, 438, 495, 652, 863 |
| BspLI | GGNNCC | 7 cut(s) | 136, 325, 395, 410, 826, 827, 849 |
| BspPI | GGATC | 4 cut(s) | 388, 401, 403, 416 |
| BspT107I | GGYRCC | 1 cut(s) | 847 |
| BsrDI | GCAATG | 1 cut(s) | 301 |
| BsrFI | RCCGGY | 3 cut(s) | 182, 460, 844 |
| BsrI | ACTGG | 1 cut(s) | 212 |
| BssAI | RCCGGY | 3 cut(s) | 182, 460, 844 |
| BssECI | CCNNGG | 3 cut(s) | 102, 143, 903 |
| BssMI | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| BssNI | GRCGYC | 1 cut(s) | 900 |
| BssT1I | CCWWGG | 1 cut(s) | 102 |
| Bst2UI | CCWGG | 4 cut(s) | 347, 398, 624, 793 |
| Bst4CI | ACNGT | 2 cut(s) | 164, 783 |
| Bst6I | CTCTTC | 1 cut(s) | 270 |
| BstACI | GRCGYC | 1 cut(s) | 900 |
| BstC8I | GCNNGC | 5 cut(s) | 56, 650, 745, 857, 861 |
| BstDEI | CTNAG | 5 cut(s) | 199, 488, 710, 888, 915 |
| BstDSI | CCRYGG | 3 cut(s) | 102, 143, 903 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 318 |
| BstF5I | GGATG | 3 cut(s) | 559, 759, 913 |
| BstFNI | CGCG | 5 cut(s) | 145, 438, 495, 652, 863 |
| BstH2I | RGCGCY | 2 cut(s) | 126, 630 |
| BstHHI | GCGC | 4 cut(s) | 125, 629, 654, 865 |
| BstKTI | GATC | 5 cut(s) | 396, 411, 646, 675, 874 |
| BstMAI | GTCTC | 1 cut(s) | 362 |
| BstMBI | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| BstMCI | CGRYCG | 2 cut(s) | 183, 465 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 64, 129, 381, 633, 753 |
| BstNI | CCWGG | 4 cut(s) | 347, 398, 624, 793 |
| BstNSI | RCATGY | 1 cut(s) | 859 |
| BstSCI | CCNGG | 4 cut(s) | 345, 396, 622, 791 |
| BstSLI | GKGCMC | 1 cut(s) | 828 |
| BstUI | CGCG | 5 cut(s) | 145, 438, 495, 652, 863 |
| BstV1I | GCAGC | 3 cut(s) | 132, 438, 685 |
| BstX2I | RGATCY | 2 cut(s) | 393, 408 |
| BstYI | RGATCY | 2 cut(s) | 393, 408 |
| BstZI | CGGCCG | 1 cut(s) | 462 |
| BsuI | GTATCC | 1 cut(s) | 917 |
| BsuRI | GGCC | 9 cut(s) | 72, 107, 278, 350, 384, 464, 756, 826, 838 |
| BtgI | CCRYGG | 3 cut(s) | 102, 143, 903 |
| BtgZI | GCGATG | 1 cut(s) | 453 |
| BtsCI | GGATG | 3 cut(s) | 559, 759, 913 |
| BtsIMutI | CAGTG | 2 cut(s) | 639, 779 |
| BtuMI | TCGCGA | 1 cut(s) | 438 |
| Cac8I | GCNNGC | 5 cut(s) | 56, 650, 745, 857, 861 |
| CfoI | GCGC | 4 cut(s) | 125, 629, 654, 865 |
| Cfr10I | RCCGGY | 3 cut(s) | 182, 460, 844 |
| Cfr13I | GGNCC | 6 cut(s) | 106, 277, 383, 824, 825, 836 |
| Cfr42I | CCGCGG | 1 cut(s) | 146 |
| CseI | GACGC | 1 cut(s) | 908 |
| Csp6I | GTAC | 7 cut(s) | 205, 231, 343, 505, 544, 578, 848 |
| CviAII | CATG | 4 cut(s) | 68, 103, 113, 856 |
| CviQI | GTAC | 7 cut(s) | 205, 231, 343, 505, 544, 578, 848 |
| DdeI | CTNAG | 5 cut(s) | 199, 488, 710, 888, 915 |
| DpnI | GATC | 5 cut(s) | 395, 410, 645, 674, 873 |
| DpnII | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| EaeI | YGGCCR | 2 cut(s) | 70, 462 |
| EagI | CGGCCG | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 270 |
| EarI | CTCTTC | 1 cut(s) | 270 |
| EclXI | CGGCCG | 1 cut(s) | 462 |
| Eco130I | CCWWGG | 1 cut(s) | 102 |
| Eco24I | GRGCYC | 2 cut(s) | 328, 828 |
| Eco47III | AGCGCT | 1 cut(s) | 124 |
| Eco52I | CGGCCG | 1 cut(s) | 462 |
| Eco88I | CYCGRG | 1 cut(s) | 305 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 318 |
| EcoO109I | RGGNCCY | 1 cut(s) | 825 |
| EcoRII | CCWGG | 4 cut(s) | 345, 396, 622, 791 |
| EcoT14I | CCWWGG | 1 cut(s) | 102 |
| EcoT22I | ATGCAT | 1 cut(s) | 360 |
| EcoT38I | GRGCYC | 2 cut(s) | 328, 828 |
| ErhI | CCWWGG | 1 cut(s) | 102 |
| FaeI | CATG | 4 cut(s) | 71, 106, 116, 859 |
| FaqI | GGGAC | 2 cut(s) | 71, 925 |
| FatI | CATG | 4 cut(s) | 67, 102, 112, 855 |
| FblI | GTMKAC | 1 cut(s) | 40 |
| Fnu4HI | GCNGC | 6 cut(s) | 121, 133, 292, 452, 493, 699 |
| FokI | GGATG | 3 cut(s) | 566, 746, 920 |
| FriOI | GRGCYC | 2 cut(s) | 328, 828 |
| Fsp4HI | GCNGC | 6 cut(s) | 121, 133, 292, 452, 493, 699 |
| FspBI | CTAG | 2 cut(s) | 372, 928 |
| GlaI | GCGC | 4 cut(s) | 124, 628, 653, 864 |
| GluI | GCNGC | 6 cut(s) | 121, 133, 292, 452, 493, 699 |
| HaeII | RGCGCY | 2 cut(s) | 126, 630 |
| HaeIII | GGCC | 9 cut(s) | 72, 107, 278, 350, 384, 464, 756, 826, 838 |
| HapII | CCGG | 3 cut(s) | 183, 461, 845 |
| HgaI | GACGC | 1 cut(s) | 908 |
| HhaI | GCGC | 4 cut(s) | 125, 629, 654, 865 |
| Hin1I | GRCGYC | 1 cut(s) | 900 |
| Hin1II | CATG | 4 cut(s) | 71, 106, 116, 859 |
| Hin6I | GCGC | 4 cut(s) | 123, 627, 652, 863 |
| HinP1I | GCGC | 4 cut(s) | 123, 627, 652, 863 |
| HinfI | GANTC | 4 cut(s) | 80, 262, 591, 615 |
| HpaII | CCGG | 3 cut(s) | 183, 461, 845 |
| Hpy166II | GTNNAC | 1 cut(s) | 41 |
| Hpy188I | TCNGA | 2 cut(s) | 526, 685 |
| Hpy188III | TCNNGA | 5 cut(s) | 167, 406, 437, 551, 878 |
| Hpy8I | GTNNAC | 1 cut(s) | 41 |
| Hpy99I | CGWCG | 2 cut(s) | 438, 902 |
| HpyAV | CCTTC | 4 cut(s) | 205, 557, 629, 914 |
| HpyCH4III | ACNGT | 2 cut(s) | 164, 783 |
| HpyCH4V | TGCA | 2 cut(s) | 67, 358 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 64, 129, 381, 633, 753 |
| HpyF3I | CTNAG | 5 cut(s) | 199, 488, 710, 888, 915 |
| Hsp92I | GRCGYC | 1 cut(s) | 900 |
| Hsp92II | CATG | 4 cut(s) | 71, 106, 116, 859 |
| HspAI | GCGC | 4 cut(s) | 123, 627, 652, 863 |
| KpnI | GGTACC | 1 cut(s) | 851 |
| KspI | CCGCGG | 1 cut(s) | 146 |
| Kzo9I | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| LmnI | GCTCC | 3 cut(s) | 140, 323, 634 |
| Lsp1109I | GCAGC | 3 cut(s) | 132, 438, 685 |
| LweI | GCATC | 4 cut(s) | 367, 384, 549, 778 |
| MaeI | CTAG | 2 cut(s) | 372, 928 |
| MalI | GATC | 5 cut(s) | 395, 410, 645, 674, 873 |
| MboI | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| MboII | GAAGA | 5 cut(s) | 217, 257, 600, 716, 866 |
| MflI | RGATCY | 2 cut(s) | 393, 408 |
| MhlI | GDGCHC | 3 cut(s) | 174, 328, 828 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 7 cut(s) | 33, 74, 189, 218, 749, 764, 796 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MlyI | GAGTC | 2 cut(s) | 74, 256 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| Mph1103I | ATGCAT | 1 cut(s) | 360 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 1 cut(s) | 145 |
| MspI | CCGG | 3 cut(s) | 183, 461, 845 |
| MspR9I | CCNGG | 4 cut(s) | 347, 398, 624, 793 |
| Mva1269I | GAATGC | 1 cut(s) | 533 |
| MvaI | CCWGG | 4 cut(s) | 347, 398, 624, 793 |
| MvnI | CGCG | 5 cut(s) | 145, 438, 495, 652, 863 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 64, 129, 381, 633, 753 |
| NcoI | CCATGG | 1 cut(s) | 102 |
| NdeII | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| NlaIII | CATG | 4 cut(s) | 71, 106, 116, 859 |
| NlaIV | GGNNCC | 7 cut(s) | 136, 325, 395, 410, 826, 827, 849 |
| NruI | TCGCGA | 1 cut(s) | 438 |
| NsiI | ATGCAT | 1 cut(s) | 360 |
| NspI | RCATGY | 1 cut(s) | 859 |
| PaeI | GCATGC | 1 cut(s) | 859 |
| PctI | GAATGC | 1 cut(s) | 533 |
| PfeI | GAWTC | 2 cut(s) | 591, 615 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 475 |
| PfoI | TCCNGGA | 1 cut(s) | 396 |
| PkrI | GCNGC | 6 cut(s) | 122, 134, 293, 453, 494, 700 |
| PleI | GAGTC | 2 cut(s) | 74, 256 |
| PpsI | GAGTC | 2 cut(s) | 74, 256 |
| Psp6I | CCWGG | 4 cut(s) | 345, 396, 622, 791 |
| PspGI | CCWGG | 4 cut(s) | 345, 396, 622, 791 |
| PspN4I | GGNNCC | 7 cut(s) | 136, 325, 395, 410, 826, 827, 849 |
| PspOMI | GGGCCC | 1 cut(s) | 824 |
| PspPI | GGNCC | 6 cut(s) | 106, 277, 383, 824, 825, 836 |
| PsuI | RGATCY | 2 cut(s) | 393, 408 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| RruI | TCGCGA | 1 cut(s) | 438 |
| RsaI | GTAC | 7 cut(s) | 206, 232, 344, 506, 545, 579, 849 |
| RsaNI | GTAC | 7 cut(s) | 205, 231, 343, 505, 544, 578, 848 |
| SacII | CCGCGG | 1 cut(s) | 146 |
| SatI | GCNGC | 6 cut(s) | 121, 133, 292, 452, 493, 699 |
| Sau3AI | GATC | 5 cut(s) | 393, 408, 643, 672, 871 |
| Sau96I | GGNCC | 6 cut(s) | 106, 277, 383, 824, 825, 836 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SchI | GAGTC | 2 cut(s) | 74, 256 |
| ScrFI | CCNGG | 4 cut(s) | 347, 398, 624, 793 |
| SduI | GDGCHC | 3 cut(s) | 174, 328, 828 |
| SetI | ASST | 8 cut(s) | 256, 306, 316, 506, 549, 601, 723, 809 |
| SfaNI | GCATC | 4 cut(s) | 367, 384, 549, 778 |
| Sfr303I | CCGCGG | 1 cut(s) | 146 |
| SgrBI | CCGCGG | 1 cut(s) | 146 |
| SphI | GCATGC | 1 cut(s) | 859 |
| Sse9I | AATT | 7 cut(s) | 33, 74, 189, 218, 749, 764, 796 |
| SsiI | CCGC | 6 cut(s) | 132, 143, 145, 291, 493, 602 |
| SspMI | CTAG | 2 cut(s) | 372, 928 |
| StyD4I | CCNGG | 4 cut(s) | 345, 396, 622, 791 |
| StyI | CCWWGG | 1 cut(s) | 102 |
| TaaI | ACNGT | 2 cut(s) | 164, 783 |
| TaqI | TCGA | 5 cut(s) | 78, 98, 166, 671, 897 |
| TasI | AATT | 7 cut(s) | 33, 74, 189, 218, 749, 764, 796 |
| TatI | WGTACW | 3 cut(s) | 204, 230, 577 |
| TauI | GCSGC | 3 cut(s) | 135, 294, 495 |
| TfiI | GAWTC | 2 cut(s) | 591, 615 |
| TscAI | CASTG | 2 cut(s) | 646, 786 |
| TseI | GCWGC | 3 cut(s) | 120, 451, 698 |
| TspDTI | ATGAA | 1 cut(s) | 211 |
| TspGWI | ACGGA | 1 cut(s) | 627 |
| TspRI | CASTG | 2 cut(s) | 646, 786 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 475 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 318 |
| XapI | RAATTY | 1 cut(s) | 218 |
| XceI | RCATGY | 1 cut(s) | 859 |
| XmiI | GTMKAC | 1 cut(s) | 40 |
| XspI | CTAG | 2 cut(s) | 372, 928 |
| ZrmI | AGTACT | 1 cut(s) | 206 |
| Zsp2I | ATGCAT | 1 cut(s) | 360 |