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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 967, 1063 |
| Acc36I | ACCTGC | 2 cut(s) | 967, 1063 |
| AccB1I | GGYRCC | 1 cut(s) | 728 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 320, 353, 797 |
| AccBSI | CCGCTC | 1 cut(s) | 468 |
| AccII | CGCG | 7 cut(s) | 8, 134, 241, 288, 653, 809, 840 |
| AclWI | GGATC | 1 cut(s) | 479 |
| AcuI | CTGAAG | 4 cut(s) | 420, 708, 1005, 1065 |
| AcyI | GRCGYC | 1 cut(s) | 639 |
| AfaI | GTAC | 4 cut(s) | 675, 906, 981, 1091 |
| AgsI | TTSAA | 1 cut(s) | 950 |
| AhlI | ACTAGT | 1 cut(s) | 772 |
| AjnI | CCWGG | 3 cut(s) | 762, 907, 1107 |
| AluBI | AGCT | 3 cut(s) | 151, 693, 750 |
| AluI | AGCT | 3 cut(s) | 151, 693, 750 |
| Alw21I | GWGCWC | 1 cut(s) | 294 |
| Alw26I | GTCTC | 2 cut(s) | 97, 1093 |
| AlwI | GGATC | 1 cut(s) | 479 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 353, 797 |
| Ama87I | CYCGRG | 1 cut(s) | 735 |
| AoxI | GGCC | 4 cut(s) | 242, 450, 702, 1134 |
| ApeKI | GCWGC | 3 cut(s) | 440, 690, 893 |
| AspLEI | GCGC | 5 cut(s) | 10, 604, 655, 811, 842 |
| AspS9I | GGNCC | 6 cut(s) | 57, 243, 424, 558, 766, 804 |
| AsuC2I | CCSGG | 1 cut(s) | 929 |
| AsuHPI | GGTGA | 3 cut(s) | 428, 584, 687 |
| AvaI | CYCGRG | 1 cut(s) | 735 |
| AvaII | GGWCC | 5 cut(s) | 57, 424, 558, 766, 804 |
| AxyI | CCTNAGG | 3 cut(s) | 267, 393, 699 |
| BaeGI | GKGCMC | 1 cut(s) | 733 |
| BanI | GGYRCC | 1 cut(s) | 728 |
| BanII | GRGCYC | 1 cut(s) | 256 |
| BbsI | GAAGAC | 3 cut(s) | 408, 528, 1138 |
| Bbv12I | GWGCWC | 1 cut(s) | 294 |
| BbvCI | CCTCAGC | 1 cut(s) | 562 |
| BbvI | GCAGC | 3 cut(s) | 427, 702, 880 |
| BccI | CCATC | 2 cut(s) | 680, 1126 |
| BceAI | ACGGC | 3 cut(s) | 32, 551, 1127 |
| BciT130I | CCWGG | 3 cut(s) | 764, 909, 1109 |
| BcnI | CCSGG | 1 cut(s) | 929 |
| BcoDI | GTCTC | 2 cut(s) | 97, 1093 |
| BcuI | ACTAGT | 1 cut(s) | 772 |
| BfaI | CTAG | 7 cut(s) | 671, 683, 747, 773, 848, 870, 1127 |
| BfoI | RGCGCY | 1 cut(s) | 605 |
| BfuAI | ACCTGC | 2 cut(s) | 967, 1063 |
| BisI | GCNGC | 7 cut(s) | 242, 441, 466, 656, 691, 891, 894 |
| BlsI | GCNGC | 7 cut(s) | 243, 442, 467, 657, 692, 892, 895 |
| BmcAI | AGTACT | 1 cut(s) | 675 |
| Bme1390I | CCNGG | 4 cut(s) | 764, 909, 929, 1109 |
| Bme18I | GGWCC | 5 cut(s) | 57, 424, 558, 766, 804 |
| BmeT110I | CYCGRG | 1 cut(s) | 735 |
| BmgT120I | GGNCC | 6 cut(s) | 57, 243, 424, 558, 766, 804 |
| BmrFI | CCNGG | 4 cut(s) | 764, 909, 929, 1109 |
| BmsI | GCATC | 3 cut(s) | 705, 824, 851 |
| BpiI | GAAGAC | 3 cut(s) | 408, 528, 1138 |
| Bpu10I | CCTNAGC | 1 cut(s) | 562 |
| BpuEI | CTTGAG | 1 cut(s) | 197 |
| BpuMI | CCSGG | 1 cut(s) | 929 |
| BsaHI | GRCGYC | 1 cut(s) | 639 |
| BsaJI | CCNNGG | 5 cut(s) | 48, 239, 488, 705, 1108 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 930, 960 |
| Bse1I | ACTGG | 2 cut(s) | 358, 525 |
| Bse21I | CCTNAGG | 3 cut(s) | 267, 393, 699 |
| BseBI | CCWGG | 3 cut(s) | 764, 909, 1109 |
| BseDI | CCNNGG | 5 cut(s) | 48, 239, 488, 705, 1108 |
| BseGI | GGATG | 3 cut(s) | 720, 842, 1137 |
| BseMII | CTCAG | 5 cut(s) | 281, 384, 483, 576, 690 |
| BseNI | ACTGG | 2 cut(s) | 358, 525 |
| BseRI | GAGGAG | 4 cut(s) | 397, 722, 896, 1094 |
| BseSI | GKGCMC | 1 cut(s) | 733 |
| BseXI | GCAGC | 3 cut(s) | 427, 702, 880 |
| BseYI | CCCAGC | 2 cut(s) | 105, 346 |
| Bsh1236I | CGCG | 7 cut(s) | 8, 134, 241, 288, 653, 809, 840 |
| Bsh1285I | CGRYCG | 1 cut(s) | 328 |
| BshFI | GGCC | 4 cut(s) | 244, 452, 704, 1136 |
| BshNI | GGYRCC | 1 cut(s) | 728 |
| BsiEI | CGRYCG | 1 cut(s) | 328 |
| BsiHKAI | GWGCWC | 1 cut(s) | 294 |
| BsiHKCI | CYCGRG | 1 cut(s) | 735 |
| BsiSI | CCGG | 2 cut(s) | 636, 929 |
| BslFI | GGGAC | 3 cut(s) | 70, 123, 817 |
| BsmAI | GTCTC | 2 cut(s) | 97, 1093 |
| BsmFI | GGGAC | 3 cut(s) | 70, 123, 817 |
| BsnI | GGCC | 4 cut(s) | 244, 452, 704, 1136 |
| BsoBI | CYCGRG | 1 cut(s) | 735 |
| Bsp1286I | GDGCHC | 3 cut(s) | 256, 294, 733 |
| Bsp143I | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| Bsp19I | CCATGG | 1 cut(s) | 488 |
| Bsp68I | TCGCGA | 2 cut(s) | 134, 288 |
| BspANI | GGCC | 4 cut(s) | 244, 452, 704, 1136 |
| BspCNI | CTCAG | 5 cut(s) | 280, 385, 482, 575, 691 |
| BspFNI | CGCG | 7 cut(s) | 8, 134, 241, 288, 653, 809, 840 |
| BspMI | ACCTGC | 2 cut(s) | 967, 1063 |
| BspPI | GGATC | 1 cut(s) | 479 |
| BspQI | GCTCTTC | 1 cut(s) | 1032 |
| BspT107I | GGYRCC | 1 cut(s) | 728 |
| BsrBI | CCGCTC | 1 cut(s) | 468 |
| BsrI | ACTGG | 2 cut(s) | 358, 525 |
| BssECI | CCNNGG | 5 cut(s) | 48, 239, 488, 705, 1108 |
| BssMI | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| BssNI | GRCGYC | 1 cut(s) | 639 |
| BssT1I | CCWWGG | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 3 cut(s) | 764, 909, 1109 |
| Bst4CI | ACNGT | 3 cut(s) | 117, 334, 382 |
| Bst6I | CTCTTC | 4 cut(s) | 134, 415, 987, 1032 |
| BstACI | GRCGYC | 1 cut(s) | 639 |
| BstDEI | CTNAG | 6 cut(s) | 152, 267, 393, 469, 562, 699 |
| BstDSI | CCRYGG | 3 cut(s) | 48, 239, 488 |
| BstF5I | GGATG | 3 cut(s) | 720, 842, 1137 |
| BstFNI | CGCG | 7 cut(s) | 8, 134, 241, 288, 653, 809, 840 |
| BstH2I | RGCGCY | 1 cut(s) | 605 |
| BstHHI | GCGC | 5 cut(s) | 10, 604, 655, 811, 842 |
| BstKTI | GATC | 5 cut(s) | 19, 190, 438, 487, 517 |
| BstMAI | GTCTC | 2 cut(s) | 97, 1093 |
| BstMBI | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| BstMCI | CGRYCG | 1 cut(s) | 328 |
| BstNI | CCWGG | 3 cut(s) | 764, 909, 1109 |
| BstSCI | CCNGG | 4 cut(s) | 762, 907, 927, 1107 |
| BstSLI | GKGCMC | 1 cut(s) | 733 |
| BstUI | CGCG | 7 cut(s) | 8, 134, 241, 288, 653, 809, 840 |
| BstV1I | GCAGC | 3 cut(s) | 427, 702, 880 |
| BstV2I | GAAGAC | 3 cut(s) | 408, 528, 1138 |
| Bsu36I | CCTNAGG | 3 cut(s) | 267, 393, 699 |
| BsuRI | GGCC | 4 cut(s) | 244, 452, 704, 1136 |
| BtgI | CCRYGG | 3 cut(s) | 48, 239, 488 |
| BtsCI | GGATG | 3 cut(s) | 720, 842, 1137 |
| BtsIMutI | CAGTG | 5 cut(s) | 49, 204, 343, 351, 387 |
| BtuMI | TCGCGA | 2 cut(s) | 134, 288 |
| BveI | ACCTGC | 2 cut(s) | 967, 1063 |
| CaiI | CAGNNNCTG | 2 cut(s) | 353, 797 |
| CfoI | GCGC | 5 cut(s) | 10, 604, 655, 811, 842 |
| Cfr13I | GGNCC | 6 cut(s) | 57, 243, 424, 558, 766, 804 |
| Cfr42I | CCGCGG | 1 cut(s) | 242 |
| CseI | GACGC | 1 cut(s) | 628 |
| CsiI | ACCWGGT | 1 cut(s) | 907 |
| Csp6I | GTAC | 4 cut(s) | 674, 905, 980, 1090 |
| CviAII | CATG | 2 cut(s) | 489, 968 |
| CviQI | GTAC | 4 cut(s) | 674, 905, 980, 1090 |
| DdeI | CTNAG | 6 cut(s) | 152, 267, 393, 469, 562, 699 |
| DpnI | GATC | 5 cut(s) | 18, 189, 437, 486, 516 |
| DpnII | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| Eam1104I | CTCTTC | 4 cut(s) | 134, 415, 987, 1032 |
| EarI | CTCTTC | 4 cut(s) | 134, 415, 987, 1032 |
| EciI | GGCGGA | 1 cut(s) | 509 |
| Eco130I | CCWWGG | 1 cut(s) | 488 |
| Eco24I | GRGCYC | 1 cut(s) | 256 |
| Eco47I | GGWCC | 5 cut(s) | 57, 424, 558, 766, 804 |
| Eco57I | CTGAAG | 4 cut(s) | 420, 708, 1005, 1065 |
| Eco81I | CCTNAGG | 3 cut(s) | 267, 393, 699 |
| Eco88I | CYCGRG | 1 cut(s) | 735 |
| EcoO109I | RGGNCCY | 2 cut(s) | 424, 558 |
| EcoRII | CCWGG | 3 cut(s) | 762, 907, 1107 |
| EcoT14I | CCWWGG | 1 cut(s) | 488 |
| EcoT38I | GRGCYC | 1 cut(s) | 256 |
| ErhI | CCWWGG | 1 cut(s) | 488 |
| FaeI | CATG | 2 cut(s) | 492, 971 |
| FaiI | YATR | 7 cut(s) | 35, 72, 120, 278, 490, 581, 969 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 819, 851, 1068, 1100 |
| FaqI | GGGAC | 3 cut(s) | 70, 123, 817 |
| FatI | CATG | 2 cut(s) | 488, 967 |
| FauI | CCCGC | 2 cut(s) | 435, 794 |
| Fnu4HI | GCNGC | 7 cut(s) | 242, 441, 466, 656, 691, 891, 894 |
| FokI | GGATG | 3 cut(s) | 727, 829, 1144 |
| FriOI | GRGCYC | 1 cut(s) | 256 |
| Fsp4HI | GCNGC | 7 cut(s) | 242, 441, 466, 656, 691, 891, 894 |
| FspBI | CTAG | 7 cut(s) | 671, 683, 747, 773, 848, 870, 1127 |
| GlaI | GCGC | 5 cut(s) | 9, 603, 654, 810, 841 |
| GluI | GCNGC | 7 cut(s) | 242, 441, 466, 656, 691, 891, 894 |
| GsaI | CCCAGC | 2 cut(s) | 109, 350 |
| HaeII | RGCGCY | 1 cut(s) | 605 |
| HaeIII | GGCC | 4 cut(s) | 244, 452, 704, 1136 |
| HapII | CCGG | 2 cut(s) | 636, 929 |
| HgaI | GACGC | 1 cut(s) | 628 |
| HhaI | GCGC | 5 cut(s) | 10, 604, 655, 811, 842 |
| Hin1I | GRCGYC | 1 cut(s) | 639 |
| Hin1II | CATG | 2 cut(s) | 492, 971 |
| Hin6I | GCGC | 5 cut(s) | 8, 602, 653, 809, 840 |
| HinP1I | GCGC | 5 cut(s) | 8, 602, 653, 809, 840 |
| HincII | GTYRAC | 2 cut(s) | 100, 172 |
| HindII | GTYRAC | 2 cut(s) | 100, 172 |
| HinfI | GANTC | 7 cut(s) | 283, 404, 787, 794, 859, 865, 1101 |
| HpaII | CCGG | 2 cut(s) | 636, 929 |
| HphI | GGTGA | 3 cut(s) | 428, 584, 687 |
| Hpy166II | GTNNAC | 3 cut(s) | 52, 100, 172 |
| Hpy188I | TCNGA | 3 cut(s) | 472, 864, 1151 |
| Hpy188III | TCNNGA | 8 cut(s) | 23, 133, 227, 287, 540, 737, 791, 1067 |
| Hpy8I | GTNNAC | 3 cut(s) | 52, 100, 172 |
| Hpy99I | CGWCG | 1 cut(s) | 644 |
| HpyCH4III | ACNGT | 3 cut(s) | 117, 334, 382 |
| HpyCH4V | TGCA | 2 cut(s) | 456, 815 |
| HpyF3I | CTNAG | 6 cut(s) | 152, 267, 393, 469, 562, 699 |
| Hsp92I | GRCGYC | 1 cut(s) | 639 |
| Hsp92II | CATG | 2 cut(s) | 492, 971 |
| HspAI | GCGC | 5 cut(s) | 8, 602, 653, 809, 840 |
| KspI | CCGCGG | 1 cut(s) | 242 |
| Kzo9I | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| LguI | GCTCTTC | 1 cut(s) | 1032 |
| LmnI | GCTCC | 5 cut(s) | 148, 241, 388, 462, 723 |
| Lsp1109I | GCAGC | 3 cut(s) | 427, 702, 880 |
| LweI | GCATC | 3 cut(s) | 705, 824, 851 |
| MabI | ACCWGGT | 1 cut(s) | 907 |
| MaeI | CTAG | 7 cut(s) | 671, 683, 747, 773, 848, 870, 1127 |
| MaeIII | GTNAC | 3 cut(s) | 180, 382, 1113 |
| MalI | GATC | 5 cut(s) | 18, 189, 437, 486, 516 |
| MbiI | CCGCTC | 1 cut(s) | 468 |
| MboI | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| MhlI | GDGCHC | 3 cut(s) | 256, 294, 733 |
| MluCI | AATT | 1 cut(s) | 1010 |
| MlyI | GAGTC | 2 cut(s) | 398, 1095 |
| MspA1I | CMGCKG | 3 cut(s) | 241, 658, 893 |
| MspI | CCGG | 2 cut(s) | 636, 929 |
| MspR9I | CCNGG | 4 cut(s) | 764, 909, 929, 1109 |
| MvaI | CCWGG | 3 cut(s) | 764, 909, 1109 |
| MvnI | CGCG | 7 cut(s) | 8, 134, 241, 288, 653, 809, 840 |
| NciI | CCSGG | 1 cut(s) | 929 |
| NcoI | CCATGG | 1 cut(s) | 488 |
| NdeII | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| NlaIII | CATG | 2 cut(s) | 492, 971 |
| NmeAIII | GCCGAG | 1 cut(s) | 730 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| NruI | TCGCGA | 2 cut(s) | 134, 288 |
| PaeR7I | CTCGAG | 1 cut(s) | 735 |
| PaqCI | CACCTGC | 2 cut(s) | 967, 1063 |
| PciSI | GCTCTTC | 1 cut(s) | 1032 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 12 |
| PfeI | GAWTC | 5 cut(s) | 283, 787, 794, 859, 865 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 320, 353, 797 |
| PfoI | TCCNGGA | 1 cut(s) | 762 |
| PkrI | GCNGC | 7 cut(s) | 243, 442, 467, 657, 692, 892, 895 |
| PleI | GAGTC | 2 cut(s) | 398, 1095 |
| PpsI | GAGTC | 2 cut(s) | 398, 1095 |
| PpuMI | RGGWCCY | 2 cut(s) | 424, 558 |
| Psp5II | RGGWCCY | 2 cut(s) | 424, 558 |
| Psp6I | CCWGG | 3 cut(s) | 762, 907, 1107 |
| PspFI | CCCAGC | 2 cut(s) | 105, 346 |
| PspGI | CCWGG | 3 cut(s) | 762, 907, 1107 |
| PspPI | GGNCC | 6 cut(s) | 57, 243, 424, 558, 766, 804 |
| PspPPI | RGGWCCY | 2 cut(s) | 424, 558 |
| PstNI | CAGNNNCTG | 2 cut(s) | 353, 797 |
| RruI | TCGCGA | 2 cut(s) | 134, 288 |
| RsaI | GTAC | 4 cut(s) | 675, 906, 981, 1091 |
| RsaNI | GTAC | 4 cut(s) | 674, 905, 980, 1090 |
| SacII | CCGCGG | 1 cut(s) | 242 |
| SapI | GCTCTTC | 1 cut(s) | 1032 |
| SatI | GCNGC | 7 cut(s) | 242, 441, 466, 656, 691, 891, 894 |
| Sau3AI | GATC | 5 cut(s) | 16, 187, 435, 484, 514 |
| Sau96I | GGNCC | 6 cut(s) | 57, 243, 424, 558, 766, 804 |
| ScaI | AGTACT | 1 cut(s) | 675 |
| SchI | GAGTC | 2 cut(s) | 398, 1095 |
| ScrFI | CCNGG | 4 cut(s) | 764, 909, 929, 1109 |
| SduI | GDGCHC | 3 cut(s) | 256, 294, 733 |
| SexAI | ACCWGGT | 1 cut(s) | 907 |
| SfaNI | GCATC | 3 cut(s) | 705, 824, 851 |
| Sfr274I | CTCGAG | 1 cut(s) | 735 |
| Sfr303I | CCGCGG | 1 cut(s) | 242 |
| SgrBI | CCGCGG | 1 cut(s) | 242 |
| SinI | GGWCC | 5 cut(s) | 57, 424, 558, 766, 804 |
| SlaI | CTCGAG | 1 cut(s) | 735 |
| SmlI | CTYRAG | 2 cut(s) | 176, 735 |
| SmoI | CTYRAG | 2 cut(s) | 176, 735 |
| SpeI | ACTAGT | 1 cut(s) | 772 |
| Sse9I | AATT | 1 cut(s) | 1010 |
| SspMI | CTAG | 7 cut(s) | 671, 683, 747, 773, 848, 870, 1127 |
| StyD4I | CCNGG | 4 cut(s) | 762, 907, 927, 1107 |
| StyI | CCWWGG | 1 cut(s) | 488 |
| TaaI | ACNGT | 3 cut(s) | 117, 334, 382 |
| TaqI | TCGA | 7 cut(s) | 15, 478, 517, 736, 785, 879, 1035 |
| TaqII | GACCGA | 1 cut(s) | 74 |
| TasI | AATT | 1 cut(s) | 1010 |
| TatI | WGTACW | 1 cut(s) | 673 |
| TauI | GCSGC | 4 cut(s) | 244, 468, 658, 893 |
| TfiI | GAWTC | 5 cut(s) | 283, 787, 794, 859, 865 |
| TscAI | CASTG | 5 cut(s) | 49, 211, 343, 358, 387 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| TseI | GCWGC | 3 cut(s) | 440, 690, 893 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 2 cut(s) | 138, 516 |
| TspGWI | ACGGA | 2 cut(s) | 401, 475 |
| TspRI | CASTG | 5 cut(s) | 49, 211, 343, 358, 387 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 320, 353, 797 |
| VpaK11BI | GGWCC | 5 cut(s) | 57, 424, 558, 766, 804 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 269, 605 |
| XhoI | CTCGAG | 1 cut(s) | 735 |
| XspI | CTAG | 7 cut(s) | 671, 683, 747, 773, 848, 870, 1127 |
| ZrmI | AGTACT | 1 cut(s) | 675 |