Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 307, 1518 |
| AccB1I | GGYRCC | 1 cut(s) | 763 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1258, 1291 |
| AccBSI | CCGCTC | 3 cut(s) | 215, 378, 2056 |
| AclWI | GGATC | 3 cut(s) | 1512, 1927, 2179 |
| AcoI | YGGCCR | 3 cut(s) | 435, 510, 1293 |
| AcsI | RAATTY | 2 cut(s) | 658, 1884 |
| AcuI | CTGAAG | 3 cut(s) | 1352, 1571, 2194 |
| AcyI | GRCGYC | 2 cut(s) | 764, 914 |
| AfaI | GTAC | 7 cut(s) | 68, 284, 672, 777, 879, 1727, 1957 |
| AfeI | AGCGCT | 1 cut(s) | 564 |
| AgeI | ACCGGT | 2 cut(s) | 1113, 1824 |
| AgsI | TTSAA | 5 cut(s) | 84, 94, 249, 1339, 1657 |
| AluBI | AGCT | 6 cut(s) | 264, 1050, 1123, 1417, 1544, 1753 |
| AluI | AGCT | 6 cut(s) | 264, 1050, 1123, 1417, 1544, 1753 |
| Alw21I | GWGCWC | 2 cut(s) | 614, 1125 |
| Alw26I | GTCTC | 5 cut(s) | 45, 165, 1017, 1094, 2156 |
| AlwI | GGATC | 3 cut(s) | 1512, 1927, 2179 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1291, 1420, 2065 |
| Ama87I | CYCGRG | 2 cut(s) | 745, 1096 |
| Aor51HI | AGCGCT | 1 cut(s) | 564 |
| ApaI | GGGCCC | 1 cut(s) | 858 |
| ApoI | RAATTY | 2 cut(s) | 658, 1884 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 982, 1014, 1362, 1394 |
| AseI | ATTAAT | 1 cut(s) | 2045 |
| AsiGI | ACCGGT | 2 cut(s) | 1113, 1824 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1838, 1999 |
| AspLEI | GCGC | 9 cut(s) | 359, 565, 766, 895, 1270, 1455, 1584, 1668, 1936 |
| AsuC2I | CCSGG | 3 cut(s) | 77, 607, 1302 |
| AsuHPI | GGTGA | 5 cut(s) | 365, 459, 1435, 1768, 1824 |
| AvaI | CYCGRG | 2 cut(s) | 745, 1096 |
| AvaII | GGWCC | 1 cut(s) | 1385 |
| BaeGI | GKGCMC | 1 cut(s) | 858 |
| BalI | TGGCCA | 3 cut(s) | 437, 512, 1295 |
| BanI | GGYRCC | 1 cut(s) | 763 |
| BanII | GRGCYC | 5 cut(s) | 746, 858, 1125, 1163, 1950 |
| BauI | CACGAG | 1 cut(s) | 1684 |
| BbsI | GAAGAC | 2 cut(s) | 343, 1346 |
| Bbv12I | GWGCWC | 2 cut(s) | 614, 1125 |
| BbvCI | CCTCAGC | 1 cut(s) | 1413 |
| BccI | CCATC | 7 cut(s) | 200, 233, 478, 484, 775, 916, 973 |
| BceAI | ACGGC | 3 cut(s) | 329, 744, 901 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 720, 754, 1036, 1070, 1357, 1391, 1506, 1540 |
| BciVI | GTATCC | 1 cut(s) | 931 |
| BcnI | CCSGG | 3 cut(s) | 77, 607, 1302 |
| BcoDI | GTCTC | 5 cut(s) | 45, 165, 1017, 1094, 2156 |
| BfaI | CTAG | 4 cut(s) | 61, 155, 1912, 2137 |
| BfoI | RGCGCY | 3 cut(s) | 566, 767, 1456 |
| BfuAI | ACCTGC | 2 cut(s) | 307, 1518 |
| BfuI | GTATCC | 1 cut(s) | 931 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 842 |
| BglII | AGATCT | 2 cut(s) | 294, 2205 |
| BmcAI | AGTACT | 2 cut(s) | 1727, 1957 |
| Bme18I | GGWCC | 1 cut(s) | 1385 |
| BmeT110I | CYCGRG | 2 cut(s) | 745, 1096 |
| BmrI | ACTGGG | 4 cut(s) | 224, 1409, 1516, 2031 |
| BmsI | GCATC | 3 cut(s) | 1062, 1569, 1945 |
| BmuI | ACTGGG | 4 cut(s) | 224, 1409, 1516, 2031 |
| BpiI | GAAGAC | 2 cut(s) | 343, 1346 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1554, 1586 |
| BpmI | CTGGAG | 3 cut(s) | 88, 996, 1972 |
| Bpu10I | CCTNAGC | 2 cut(s) | 902, 1413 |
| BpuEI | CTTGAG | 3 cut(s) | 1374, 1879, 1980 |
| BpuMI | CCSGG | 3 cut(s) | 77, 607, 1302 |
| Bsa29I | ATCGAT | 1 cut(s) | 335 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1675 |
| BsaHI | GRCGYC | 2 cut(s) | 764, 914 |
| BsaI | GGTCTC | 1 cut(s) | 1094 |
| BsaJI | CCNNGG | 9 cut(s) | 105, 238, 542, 583, 917, 1130, 1136, 1239, 2084 |
| BsaWI | WCCGGW | 2 cut(s) | 1113, 1824 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 108, 138, 559, 589, 2015, 2045 |
| Bse118I | RCCGGY | 4 cut(s) | 874, 1113, 1486, 1824 |
| Bse3DI | GCAATG | 1 cut(s) | 372 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1675 |
| BseCI | ATCGAT | 1 cut(s) | 335 |
| BseDI | CCNNGG | 9 cut(s) | 105, 238, 542, 583, 917, 1130, 1136, 1239, 2084 |
| BseGI | GGATG | 6 cut(s) | 225, 927, 993, 1026, 1584, 1936 |
| BseJI | GATNNNNATC | 1 cut(s) | 1675 |
| BseMI | GCAATG | 1 cut(s) | 372 |
| BseMII | CTCAG | 5 cut(s) | 920, 1012, 1427, 1712, 1982 |
| BseRI | GAGGAG | 5 cut(s) | 116, 666, 1335, 1573, 2112 |
| BseSI | GKGCMC | 1 cut(s) | 858 |
| BseYI | CCCAGC | 3 cut(s) | 160, 1284, 1749 |
| BsgI | GTGCAG | 3 cut(s) | 1061, 1219, 1546 |
| Bsh1285I | CGRYCG | 1 cut(s) | 73 |
| BshNI | GGYRCC | 1 cut(s) | 763 |
| BshTI | ACCGGT | 2 cut(s) | 1113, 1824 |
| BshVI | ATCGAT | 1 cut(s) | 335 |
| BsiEI | CGRYCG | 1 cut(s) | 73 |
| BsiHKAI | GWGCWC | 2 cut(s) | 614, 1125 |
| BsiHKCI | CYCGRG | 2 cut(s) | 745, 1096 |
| BsiSI | CCGG | 8 cut(s) | 76, 606, 875, 1114, 1301, 1487, 1693, 1825 |
| BslFI | GGGAC | 4 cut(s) | 256, 939, 2076, 2178 |
| BsmAI | GTCTC | 5 cut(s) | 45, 165, 1017, 1094, 2156 |
| BsmFI | GGGAC | 4 cut(s) | 256, 939, 2076, 2178 |
| BsmI | GAATGC | 1 cut(s) | 1571 |
| Bso31I | GGTCTC | 1 cut(s) | 1094 |
| BsoBI | CYCGRG | 2 cut(s) | 745, 1096 |
| Bsp120I | GGGCCC | 1 cut(s) | 854 |
| Bsp1286I | GDGCHC | 6 cut(s) | 614, 746, 858, 1125, 1163, 1950 |
| Bsp143I | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| Bsp19I | CCATGG | 1 cut(s) | 542 |
| Bsp68I | TCGCGA | 3 cut(s) | 1003, 1157, 2129 |
| BspCNI | CTCAG | 5 cut(s) | 921, 1013, 1426, 1711, 1983 |
| BspDI | ATCGAT | 1 cut(s) | 335 |
| BspHI | TCATGA | 1 cut(s) | 1587 |
| BspMI | ACCTGC | 2 cut(s) | 307, 1518 |
| BspPI | GGATC | 3 cut(s) | 1512, 1927, 2179 |
| BspT107I | GGYRCC | 1 cut(s) | 763 |
| BspTNI | GGTCTC | 1 cut(s) | 1094 |
| BsrBI | CCGCTC | 3 cut(s) | 215, 378, 2056 |
| BsrDI | GCAATG | 1 cut(s) | 372 |
| BsrFI | RCCGGY | 4 cut(s) | 874, 1113, 1486, 1824 |
| BssAI | RCCGGY | 4 cut(s) | 874, 1113, 1486, 1824 |
| BssECI | CCNNGG | 9 cut(s) | 105, 238, 542, 583, 917, 1130, 1136, 1239, 2084 |
| BssMI | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| BssNI | GRCGYC | 2 cut(s) | 764, 914 |
| BssSI | CACGAG | 1 cut(s) | 1684 |
| BssT1I | CCWWGG | 1 cut(s) | 542 |
| Bst2BI | CACGAG | 1 cut(s) | 1684 |
| Bst4CI | ACNGT | 6 cut(s) | 71, 253, 587, 1374, 2021, 2067 |
| Bst6I | CTCTTC | 4 cut(s) | 710, 1097, 1216, 1353 |
| BstACI | GRCGYC | 2 cut(s) | 764, 914 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1116, 1276 |
| BstDEI | CTNAG | 9 cut(s) | 55, 639, 799, 902, 929, 1021, 1413, 1698, 1991 |
| BstDSI | CCRYGG | 3 cut(s) | 542, 583, 917 |
| BstF5I | GGATG | 6 cut(s) | 225, 927, 993, 1026, 1584, 1936 |
| BstH2I | RGCGCY | 3 cut(s) | 566, 767, 1456 |
| BstHHI | GCGC | 9 cut(s) | 359, 565, 766, 895, 1270, 1455, 1584, 1668, 1936 |
| BstKTI | GATC | 9 cut(s) | 297, 339, 1007, 1084, 1520, 1922, 2012, 2174, 2208 |
| BstMAI | GTCTC | 5 cut(s) | 45, 165, 1017, 1094, 2156 |
| BstMBI | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| BstMCI | CGRYCG | 1 cut(s) | 73 |
| BstNSI | RCATGY | 1 cut(s) | 889 |
| BstSLI | GKGCMC | 1 cut(s) | 858 |
| BstV2I | GAAGAC | 2 cut(s) | 343, 1346 |
| BstX2I | RGATCY | 3 cut(s) | 294, 1919, 2205 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1642 |
| BstYI | RGATCY | 3 cut(s) | 294, 1919, 2205 |
| Bsu15I | ATCGAT | 1 cut(s) | 335 |
| BsuI | GTATCC | 1 cut(s) | 931 |
| BsuTUI | ATCGAT | 1 cut(s) | 335 |
| BtgI | CCRYGG | 3 cut(s) | 542, 583, 917 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtsCI | GGATG | 6 cut(s) | 225, 927, 993, 1026, 1584, 1936 |
| BtsI | GCAGTG | 3 cut(s) | 741, 1808, 1888 |
| BtsIMutI | CAGTG | 9 cut(s) | 29, 473, 689, 741, 1289, 1529, 1808, 1888, 2044 |
| BtuMI | TCGCGA | 3 cut(s) | 1003, 1157, 2129 |
| BveI | ACCTGC | 2 cut(s) | 307, 1518 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1291, 1420, 2065 |
| CciI | TCATGA | 1 cut(s) | 1587 |
| CfoI | GCGC | 9 cut(s) | 359, 565, 766, 895, 1270, 1455, 1584, 1668, 1936 |
| Cfr10I | RCCGGY | 4 cut(s) | 874, 1113, 1486, 1824 |
| ClaI | ATCGAT | 1 cut(s) | 335 |
| CseI | GACGC | 1 cut(s) | 922 |
| CsiI | ACCWGGT | 1 cut(s) | 268 |
| Csp6I | GTAC | 7 cut(s) | 67, 283, 671, 776, 878, 1726, 1956 |
| CspAI | ACCGGT | 2 cut(s) | 1113, 1824 |
| CviAII | CATG | 6 cut(s) | 543, 553, 886, 1588, 1642, 1789 |
| CviQI | GTAC | 7 cut(s) | 67, 283, 671, 776, 878, 1726, 1956 |
| DdeI | CTNAG | 9 cut(s) | 55, 639, 799, 902, 929, 1021, 1413, 1698, 1991 |
| DinI | GGCGCC | 1 cut(s) | 765 |
| DpnI | GATC | 9 cut(s) | 296, 338, 1006, 1083, 1519, 1921, 2011, 2173, 2207 |
| DpnII | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| EaeI | YGGCCR | 3 cut(s) | 435, 510, 1293 |
| Eam1104I | CTCTTC | 4 cut(s) | 710, 1097, 1216, 1353 |
| EarI | CTCTTC | 4 cut(s) | 710, 1097, 1216, 1353 |
| EciI | GGCGGA | 3 cut(s) | 274, 641, 1115 |
| Ecl136II | GAGCTC | 1 cut(s) | 1123 |
| Eco130I | CCWWGG | 1 cut(s) | 542 |
| Eco147I | AGGCCT | 1 cut(s) | 2215 |
| Eco24I | GRGCYC | 5 cut(s) | 746, 858, 1125, 1163, 1950 |
| Eco31I | GGTCTC | 1 cut(s) | 1094 |
| Eco47I | GGWCC | 1 cut(s) | 1385 |
| Eco47III | AGCGCT | 1 cut(s) | 564 |
| Eco53kI | GAGCTC | 1 cut(s) | 1123 |
| Eco57I | CTGAAG | 3 cut(s) | 1352, 1571, 2194 |
| Eco88I | CYCGRG | 2 cut(s) | 745, 1096 |
| EcoICRI | GAGCTC | 1 cut(s) | 1123 |
| EcoO109I | RGGNCCY | 4 cut(s) | 855, 1385, 1408, 2100 |
| EcoT14I | CCWWGG | 1 cut(s) | 542 |
| EcoT38I | GRGCYC | 5 cut(s) | 746, 858, 1125, 1163, 1950 |
| EgeI | GGCGCC | 1 cut(s) | 765 |
| EheI | GGCGCC | 1 cut(s) | 765 |
| ErhI | CCWWGG | 1 cut(s) | 542 |
| FaeI | CATG | 6 cut(s) | 546, 556, 889, 1591, 1645, 1792 |
| FaqI | GGGAC | 4 cut(s) | 256, 939, 2076, 2178 |
| FatI | CATG | 6 cut(s) | 542, 552, 885, 1587, 1641, 1788 |
| FauI | CCCGC | 3 cut(s) | 220, 1373, 1671 |
| FokI | GGATG | 6 cut(s) | 212, 934, 1000, 1013, 1591, 1923 |
| FriOI | GRGCYC | 5 cut(s) | 746, 858, 1125, 1163, 1950 |
| FspBI | CTAG | 4 cut(s) | 61, 155, 1912, 2137 |
| GlaI | GCGC | 9 cut(s) | 358, 564, 765, 894, 1269, 1454, 1583, 1667, 1935 |
| GsaI | CCCAGC | 3 cut(s) | 164, 1288, 1753 |
| GsuI | CTGGAG | 3 cut(s) | 88, 996, 1972 |
| HaeII | RGCGCY | 3 cut(s) | 566, 767, 1456 |
| HapII | CCGG | 8 cut(s) | 76, 606, 875, 1114, 1301, 1487, 1693, 1825 |
| HgaI | GACGC | 1 cut(s) | 922 |
| HhaI | GCGC | 9 cut(s) | 359, 565, 766, 895, 1270, 1455, 1584, 1668, 1936 |
| Hin1I | GRCGYC | 2 cut(s) | 764, 914 |
| Hin1II | CATG | 6 cut(s) | 546, 556, 889, 1591, 1645, 1792 |
| Hin6I | GCGC | 9 cut(s) | 357, 563, 764, 893, 1268, 1453, 1582, 1666, 1934 |
| HinP1I | GCGC | 9 cut(s) | 357, 563, 764, 893, 1268, 1453, 1582, 1666, 1934 |
| HincII | GTYRAC | 1 cut(s) | 1770 |
| HindII | GTYRAC | 1 cut(s) | 1770 |
| HinfI | GANTC | 7 cut(s) | 173, 520, 702, 1342, 1638, 2028, 2119 |
| HpaI | GTTAAC | 1 cut(s) | 1770 |
| HpaII | CCGG | 8 cut(s) | 76, 606, 875, 1114, 1301, 1487, 1693, 1825 |
| HphI | GGTGA | 5 cut(s) | 365, 459, 1435, 1768, 1824 |
| Hpy166II | GTNNAC | 5 cut(s) | 100, 373, 1188, 1770, 1815 |
| Hpy188I | TCNGA | 6 cut(s) | 152, 183, 782, 1353, 1578, 1701 |
| Hpy8I | GTNNAC | 5 cut(s) | 100, 373, 1188, 1770, 1815 |
| Hpy99I | CGWCG | 5 cut(s) | 222, 916, 1357, 1822, 2017 |
| HpyAV | CCTTC | 8 cut(s) | 88, 870, 928, 1214, 1399, 1420, 1801, 1913 |
| HpyCH4III | ACNGT | 6 cut(s) | 71, 253, 587, 1374, 2021, 2067 |
| HpyCH4IV | ACGT | 1 cut(s) | 1817 |
| HpyCH4V | TGCA | 5 cut(s) | 1078, 1105, 1236, 1527, 2070 |
| HpyF3I | CTNAG | 9 cut(s) | 55, 639, 799, 902, 929, 1021, 1413, 1698, 1991 |
| HpySE526I | ACGT | 1 cut(s) | 1817 |
| Hsp92I | GRCGYC | 2 cut(s) | 764, 914 |
| Hsp92II | CATG | 6 cut(s) | 546, 556, 889, 1591, 1645, 1792 |
| HspAI | GCGC | 9 cut(s) | 357, 563, 764, 893, 1268, 1453, 1582, 1666, 1934 |
| KasI | GGCGCC | 1 cut(s) | 763 |
| KroI | GCCGGC | 1 cut(s) | 1486 |
| KroNI | GCCGGC | 1 cut(s) | 1488 |
| KspAI | GTTAAC | 1 cut(s) | 1770 |
| Kzo9I | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| LweI | GCATC | 3 cut(s) | 1062, 1569, 1945 |
| MabI | ACCWGGT | 1 cut(s) | 268 |
| MaeI | CTAG | 4 cut(s) | 61, 155, 1912, 2137 |
| MaeII | ACGT | 1 cut(s) | 1817 |
| MaeIII | GTNAC | 2 cut(s) | 525, 2021 |
| MalI | GATC | 9 cut(s) | 296, 338, 1006, 1083, 1519, 1921, 2011, 2173, 2207 |
| MbiI | CCGCTC | 3 cut(s) | 215, 378, 2056 |
| MboI | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| MfeI | CAATTG | 1 cut(s) | 969 |
| MflI | RGATCY | 3 cut(s) | 294, 1919, 2205 |
| MhlI | GDGCHC | 6 cut(s) | 614, 746, 858, 1125, 1163, 1950 |
| MlsI | TGGCCA | 3 cut(s) | 437, 512, 1295 |
| MluCI | AATT | 9 cut(s) | 3, 514, 629, 658, 838, 969, 1151, 1507, 1884 |
| MluNI | TGGCCA | 3 cut(s) | 437, 512, 1295 |
| Mly113I | GGCGCC | 1 cut(s) | 764 |
| MlyI | GAGTC | 5 cut(s) | 167, 514, 696, 1336, 2113 |
| MmeI | TCCRAC | 2 cut(s) | 206, 1376 |
| Mox20I | TGGCCA | 3 cut(s) | 437, 512, 1295 |
| MroNI | GCCGGC | 1 cut(s) | 1486 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1838, 1999 |
| MscI | TGGCCA | 3 cut(s) | 437, 512, 1295 |
| MseI | TTAA | 3 cut(s) | 1274, 1769, 2045 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1031, 1577 |
| Msp20I | TGGCCA | 3 cut(s) | 437, 512, 1295 |
| MspA1I | CMGCKG | 4 cut(s) | 572, 1417, 1753, 1873 |
| MspI | CCGG | 8 cut(s) | 76, 606, 875, 1114, 1301, 1487, 1693, 1825 |
| MunI | CAATTG | 1 cut(s) | 969 |
| Mva1269I | GAATGC | 1 cut(s) | 1571 |
| NaeI | GCCGGC | 1 cut(s) | 1488 |
| NarI | GGCGCC | 1 cut(s) | 764 |
| NciI | CCSGG | 3 cut(s) | 77, 607, 1302 |
| NcoI | CCATGG | 1 cut(s) | 542 |
| NdeII | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| NgoMIV | GCCGGC | 1 cut(s) | 1486 |
| NlaIII | CATG | 6 cut(s) | 546, 556, 889, 1591, 1645, 1792 |
| NmuCI | GTSAC | 1 cut(s) | 525 |
| NruI | TCGCGA | 3 cut(s) | 1003, 1157, 2129 |
| NspI | RCATGY | 1 cut(s) | 889 |
| PaeI | GCATGC | 1 cut(s) | 889 |
| PaeR7I | CTCGAG | 1 cut(s) | 1096 |
| PagI | TCATGA | 1 cut(s) | 1587 |
| PceI | AGGCCT | 1 cut(s) | 2215 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 282, 1154 |
| PctI | GAATGC | 1 cut(s) | 1571 |
| PdiI | GCCGGC | 1 cut(s) | 1488 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1838, 1999 |
| PfeI | GAWTC | 2 cut(s) | 1638, 2028 |
| PflFI | GACNNNGTC | 1 cut(s) | 523 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1258, 1291 |
| PfoI | TCCNGGA | 1 cut(s) | 1300 |
| PinAI | ACCGGT | 2 cut(s) | 1113, 1824 |
| PleI | GAGTC | 5 cut(s) | 167, 514, 696, 1336, 2113 |
| PluTI | GGCGCC | 1 cut(s) | 767 |
| PpsI | GAGTC | 5 cut(s) | 167, 514, 696, 1336, 2113 |
| PpuMI | RGGWCCY | 1 cut(s) | 1385 |
| PshBI | ATTAAT | 1 cut(s) | 2045 |
| Psp124BI | GAGCTC | 1 cut(s) | 1125 |
| Psp5II | RGGWCCY | 1 cut(s) | 1385 |
| PspFI | CCCAGC | 3 cut(s) | 160, 1284, 1749 |
| PspOMI | GGGCCC | 1 cut(s) | 854 |
| PspPPI | RGGWCCY | 1 cut(s) | 1385 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1291, 1420, 2065 |
| PsuI | RGATCY | 3 cut(s) | 294, 1919, 2205 |
| PsyI | GACNNNGTC | 1 cut(s) | 523 |
| PvuII | CAGCTG | 2 cut(s) | 1417, 1753 |
| RruI | TCGCGA | 3 cut(s) | 1003, 1157, 2129 |
| RsaI | GTAC | 7 cut(s) | 68, 284, 672, 777, 879, 1727, 1957 |
| RsaNI | GTAC | 7 cut(s) | 67, 283, 671, 776, 878, 1726, 1956 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1031, 1577 |
| SacI | GAGCTC | 1 cut(s) | 1125 |
| SaqAI | TTAA | 3 cut(s) | 1274, 1769, 2045 |
| Sau3AI | GATC | 9 cut(s) | 294, 336, 1004, 1081, 1517, 1919, 2009, 2171, 2205 |
| ScaI | AGTACT | 2 cut(s) | 1727, 1957 |
| SchI | GAGTC | 5 cut(s) | 167, 514, 696, 1336, 2113 |
| SduI | GDGCHC | 6 cut(s) | 614, 746, 858, 1125, 1163, 1950 |
| SexAI | ACCWGGT | 1 cut(s) | 268 |
| SfaNI | GCATC | 3 cut(s) | 1062, 1569, 1945 |
| SfoI | GGCGCC | 1 cut(s) | 765 |
| Sfr274I | CTCGAG | 1 cut(s) | 1096 |
| SinI | GGWCC | 1 cut(s) | 1385 |
| SlaI | CTCGAG | 1 cut(s) | 1096 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1031, 1577 |
| SmlI | CTYRAG | 4 cut(s) | 1096, 1389, 1858, 1959 |
| SmoI | CTYRAG | 4 cut(s) | 1096, 1389, 1858, 1959 |
| SphI | GCATGC | 1 cut(s) | 889 |
| Sse9I | AATT | 9 cut(s) | 3, 514, 629, 658, 838, 969, 1151, 1507, 1884 |
| SseBI | AGGCCT | 1 cut(s) | 2215 |
| SspDI | GGCGCC | 1 cut(s) | 763 |
| SspMI | CTAG | 4 cut(s) | 61, 155, 1912, 2137 |
| SstI | GAGCTC | 1 cut(s) | 1125 |
| StuI | AGGCCT | 1 cut(s) | 2215 |
| StyI | CCWWGG | 1 cut(s) | 542 |
| TaaI | ACNGT | 6 cut(s) | 71, 253, 587, 1374, 2021, 2067 |
| TaiI | ACGT | 1 cut(s) | 1820 |
| TaqI | TCGA | 9 cut(s) | 335, 429, 518, 911, 1046, 1097, 1820, 1974, 2012 |
| TaqII | GACCGA | 1 cut(s) | 1076 |
| TasI | AATT | 9 cut(s) | 3, 514, 629, 658, 838, 969, 1151, 1507, 1884 |
| TatI | WGTACW | 2 cut(s) | 1725, 1955 |
| TauI | GCSGC | 2 cut(s) | 575, 2059 |
| TfiI | GAWTC | 2 cut(s) | 1638, 2028 |
| Tru1I | TTAA | 3 cut(s) | 1274, 1769, 2045 |
| Tru9I | TTAA | 3 cut(s) | 1274, 1769, 2045 |
| TscAI | CASTG | 9 cut(s) | 36, 480, 696, 741, 1296, 1529, 1808, 1895, 2044 |
| TseFI | GTSAC | 1 cut(s) | 525 |
| Tsp45I | GTSAC | 1 cut(s) | 525 |
| TspDTI | ATGAA | 6 cut(s) | 522, 651, 1630, 1960, 1992, 2063 |
| TspGWI | ACGGA | 1 cut(s) | 1929 |
| TspRI | CASTG | 9 cut(s) | 36, 480, 696, 741, 1296, 1529, 1808, 1895, 2044 |
| Tth111I | GACNNNGTC | 1 cut(s) | 523 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1258, 1291 |
| VpaK11BI | GGWCC | 1 cut(s) | 1385 |
| VspI | ATTAAT | 1 cut(s) | 2045 |
| XapI | RAATTY | 2 cut(s) | 658, 1884 |
| XceI | RCATGY | 1 cut(s) | 889 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1138, 1456, 1611 |
| XhoI | CTCGAG | 1 cut(s) | 1096 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1838, 1999 |
| XspI | CTAG | 4 cut(s) | 61, 155, 1912, 2137 |
| ZrmI | AGTACT | 2 cut(s) | 1727, 1957 |