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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 333 |
| AccB1I | GGYRCC | 3 cut(s) | 163, 267, 333 |
| AccII | CGCG | 2 cut(s) | 339, 346 |
| AciI | CCGC | 3 cut(s) | 208, 259, 337 |
| AcoI | YGGCCR | 2 cut(s) | 182, 299 |
| AcyI | GRCGYC | 2 cut(s) | 164, 188 |
| AfaI | GTAC | 1 cut(s) | 335 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 66, 67, 218 |
| AluBI | AGCT | 1 cut(s) | 362 |
| AluI | AGCT | 1 cut(s) | 362 |
| Alw26I | GTCTC | 1 cut(s) | 101 |
| AoxI | GGCC | 5 cut(s) | 157, 182, 204, 220, 299 |
| Asp718I | GGTACC | 1 cut(s) | 333 |
| AspLEI | GCGC | 3 cut(s) | 86, 166, 346 |
| AspS9I | GGNCC | 3 cut(s) | 158, 205, 221 |
| AsuC2I | CCSGG | 2 cut(s) | 161, 331 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| BaeGI | GKGCMC | 1 cut(s) | 272 |
| BalI | TGGCCA | 1 cut(s) | 301 |
| BanI | GGYRCC | 3 cut(s) | 163, 267, 333 |
| BccI | CCATC | 3 cut(s) | 199, 232, 310 |
| BceAI | ACGGC | 1 cut(s) | 219 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 38, 72 |
| BcnI | CCSGG | 2 cut(s) | 161, 331 |
| BcoDI | GTCTC | 1 cut(s) | 101 |
| BfaI | CTAG | 3 cut(s) | 281, 359, 367 |
| BfoI | RGCGCY | 2 cut(s) | 87, 167 |
| BglII | AGATCT | 2 cut(s) | 40, 355 |
| Bme1390I | CCNGG | 2 cut(s) | 161, 331 |
| BmgT120I | GGNCC | 3 cut(s) | 158, 205, 221 |
| BmiI | GGNNCC | 5 cut(s) | 6, 73, 165, 269, 335 |
| BmrFI | CCNGG | 2 cut(s) | 161, 331 |
| BpuMI | CCSGG | 2 cut(s) | 161, 331 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaHI | GRCGYC | 2 cut(s) | 164, 188 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 66, 67, 218 |
| Bse3DI | GCAATG | 1 cut(s) | 302 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 224, 302 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 66, 67, 218 |
| BseMI | GCAATG | 1 cut(s) | 302 |
| BseSI | GKGCMC | 1 cut(s) | 272 |
| BseX3I | CGGCCG | 1 cut(s) | 182 |
| Bsh1236I | CGCG | 2 cut(s) | 339, 346 |
| Bsh1285I | CGRYCG | 1 cut(s) | 185 |
| BshFI | GGCC | 5 cut(s) | 159, 184, 206, 222, 301 |
| BshNI | GGYRCC | 3 cut(s) | 163, 267, 333 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 1 cut(s) | 185 |
| BsiSI | CCGG | 4 cut(s) | 150, 161, 181, 331 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 66, 67, 218 |
| BsmAI | GTCTC | 1 cut(s) | 101 |
| BsmBI | CGTCTC | 1 cut(s) | 101 |
| BsnI | GGCC | 5 cut(s) | 159, 184, 206, 222, 301 |
| Bsp1286I | GDGCHC | 1 cut(s) | 272 |
| Bsp143I | GATC | 3 cut(s) | 28, 40, 355 |
| BspACI | CCGC | 3 cut(s) | 208, 259, 337 |
| BspANI | GGCC | 5 cut(s) | 159, 184, 206, 222, 301 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspFNI | CGCG | 2 cut(s) | 339, 346 |
| BspLI | GGNNCC | 5 cut(s) | 6, 73, 165, 269, 335 |
| BspT107I | GGYRCC | 3 cut(s) | 163, 267, 333 |
| BsrDI | GCAATG | 1 cut(s) | 302 |
| BssMI | GATC | 3 cut(s) | 28, 40, 355 |
| BssNI | GRCGYC | 2 cut(s) | 164, 188 |
| BstACI | GRCGYC | 2 cut(s) | 164, 188 |
| BstC8I | GCNNGC | 3 cut(s) | 208, 348, 364 |
| BstF5I | GGATG | 2 cut(s) | 224, 302 |
| BstFNI | CGCG | 2 cut(s) | 339, 346 |
| BstH2I | RGCGCY | 2 cut(s) | 87, 167 |
| BstHHI | GCGC | 3 cut(s) | 86, 166, 346 |
| BstKTI | GATC | 3 cut(s) | 31, 43, 358 |
| BstMAI | GTCTC | 1 cut(s) | 101 |
| BstMBI | GATC | 3 cut(s) | 28, 40, 355 |
| BstMCI | CGRYCG | 1 cut(s) | 185 |
| BstSCI | CCNGG | 2 cut(s) | 159, 329 |
| BstSLI | GKGCMC | 1 cut(s) | 272 |
| BstUI | CGCG | 2 cut(s) | 339, 346 |
| BstX2I | RGATCY | 2 cut(s) | 40, 355 |
| BstYI | RGATCY | 2 cut(s) | 40, 355 |
| BstZI | CGGCCG | 1 cut(s) | 182 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 5 cut(s) | 159, 184, 206, 222, 301 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgZI | GCGATG | 1 cut(s) | 177 |
| BtsCI | GGATG | 2 cut(s) | 224, 302 |
| Cac8I | GCNNGC | 3 cut(s) | 208, 348, 364 |
| CfoI | GCGC | 3 cut(s) | 86, 166, 346 |
| Cfr13I | GGNCC | 3 cut(s) | 158, 205, 221 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CseI | GACGC | 1 cut(s) | 196 |
| Csp6I | GTAC | 1 cut(s) | 334 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviJI | RGCY | 7 cut(s) | 5, 159, 184, 206, 222, 301, 362 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 159, 184, 206, 222, 301, 362 |
| CviQI | GTAC | 1 cut(s) | 334 |
| DinI | GGCGCC | 1 cut(s) | 165 |
| DpnI | GATC | 3 cut(s) | 30, 42, 357 |
| DpnII | GATC | 3 cut(s) | 28, 40, 355 |
| EaeI | YGGCCR | 2 cut(s) | 182, 299 |
| EagI | CGGCCG | 1 cut(s) | 182 |
| EclXI | CGGCCG | 1 cut(s) | 182 |
| Eco52I | CGGCCG | 1 cut(s) | 182 |
| EgeI | GGCGCC | 1 cut(s) | 165 |
| EheI | GGCGCC | 1 cut(s) | 165 |
| Esp3I | CGTCTC | 1 cut(s) | 101 |
| FaeI | CATG | 1 cut(s) | 149 |
| FaiI | YATR | 2 cut(s) | 110, 147 |
| FatI | CATG | 1 cut(s) | 145 |
| FauI | CCCGC | 1 cut(s) | 215 |
| FokI | GGATG | 2 cut(s) | 211, 289 |
| FspBI | CTAG | 3 cut(s) | 281, 359, 367 |
| GlaI | GCGC | 3 cut(s) | 85, 165, 345 |
| HaeII | RGCGCY | 2 cut(s) | 87, 167 |
| HaeIII | GGCC | 5 cut(s) | 159, 184, 206, 222, 301 |
| HapII | CCGG | 4 cut(s) | 150, 161, 181, 331 |
| HgaI | GACGC | 1 cut(s) | 196 |
| HhaI | GCGC | 3 cut(s) | 86, 166, 346 |
| Hin1I | GRCGYC | 2 cut(s) | 164, 188 |
| Hin1II | CATG | 1 cut(s) | 149 |
| Hin6I | GCGC | 3 cut(s) | 84, 164, 344 |
| HinP1I | GCGC | 3 cut(s) | 84, 164, 344 |
| HinfI | GANTC | 4 cut(s) | 139, 173, 243, 274 |
| HpaII | CCGG | 4 cut(s) | 150, 161, 181, 331 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy188I | TCNGA | 2 cut(s) | 45, 238 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 136 |
| Hpy99I | CGWCG | 2 cut(s) | 190, 221 |
| HpyAV | CCTTC | 1 cut(s) | 233 |
| HpyCH4V | TGCA | 1 cut(s) | 112 |
| Hsp92I | GRCGYC | 2 cut(s) | 164, 188 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| HspAI | GCGC | 3 cut(s) | 84, 164, 344 |
| KasI | GGCGCC | 1 cut(s) | 163 |
| KpnI | GGTACC | 1 cut(s) | 337 |
| Kzo9I | GATC | 3 cut(s) | 28, 40, 355 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| LpnPI | CCDG | 5 cut(s) | 38, 163, 174, 194, 344 |
| MaeI | CTAG | 3 cut(s) | 281, 359, 367 |
| MalI | GATC | 3 cut(s) | 30, 42, 357 |
| MboI | GATC | 3 cut(s) | 28, 40, 355 |
| MboII | GAAGA | 2 cut(s) | 25, 50 |
| MflI | RGATCY | 2 cut(s) | 40, 355 |
| MhlI | GDGCHC | 1 cut(s) | 272 |
| MlsI | TGGCCA | 1 cut(s) | 301 |
| MluNI | TGGCCA | 1 cut(s) | 301 |
| Mly113I | GGCGCC | 1 cut(s) | 164 |
| MlyI | GAGTC | 1 cut(s) | 237 |
| MnlI | CCTC | 4 cut(s) | 28, 244, 316, 334 |
| Mox20I | TGGCCA | 1 cut(s) | 301 |
| MscI | TGGCCA | 1 cut(s) | 301 |
| MslI | CAYNNNNRTG | 1 cut(s) | 107 |
| Msp20I | TGGCCA | 1 cut(s) | 301 |
| MspI | CCGG | 4 cut(s) | 150, 161, 181, 331 |
| MspR9I | CCNGG | 2 cut(s) | 161, 331 |
| MvnI | CGCG | 2 cut(s) | 339, 346 |
| NarI | GGCGCC | 1 cut(s) | 164 |
| NciI | CCSGG | 2 cut(s) | 161, 331 |
| NdeII | GATC | 3 cut(s) | 28, 40, 355 |
| NlaIII | CATG | 1 cut(s) | 149 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 73, 165, 269, 335 |
| NmeAIII | GCCGAG | 1 cut(s) | 192 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 209 |
| PfeI | GAWTC | 3 cut(s) | 139, 173, 274 |
| PleI | GAGTC | 1 cut(s) | 237 |
| PluTI | GGCGCC | 1 cut(s) | 167 |
| PpsI | GAGTC | 1 cut(s) | 237 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 73, 165, 269, 335 |
| PspPI | GGNCC | 3 cut(s) | 158, 205, 221 |
| PsuI | RGATCY | 2 cut(s) | 40, 355 |
| RsaI | GTAC | 1 cut(s) | 335 |
| RsaNI | GTAC | 1 cut(s) | 334 |
| RseI | CAYNNNNRTG | 1 cut(s) | 107 |
| Sau3AI | GATC | 3 cut(s) | 28, 40, 355 |
| Sau96I | GGNCC | 3 cut(s) | 158, 205, 221 |
| SchI | GAGTC | 1 cut(s) | 237 |
| ScrFI | CCNGG | 2 cut(s) | 161, 331 |
| SduI | GDGCHC | 1 cut(s) | 272 |
| SetI | ASST | 2 cut(s) | 57, 364 |
| SfoI | GGCGCC | 1 cut(s) | 165 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 107 |
| SsiI | CCGC | 3 cut(s) | 208, 259, 337 |
| SspDI | GGCGCC | 1 cut(s) | 163 |
| SspMI | CTAG | 3 cut(s) | 281, 359, 367 |
| StyD4I | CCNGG | 2 cut(s) | 159, 329 |
| TaqI | TCGA | 1 cut(s) | 27 |
| TfiI | GAWTC | 3 cut(s) | 139, 173, 274 |
| XspI | CTAG | 3 cut(s) | 281, 359, 367 |