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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 379 |
| AccB1I | GGYRCC | 1 cut(s) | 277 |
| AccI | GTMKAC | 1 cut(s) | 490 |
| AccII | CGCG | 3 cut(s) | 252, 324, 545 |
| AciI | CCGC | 5 cut(s) | 207, 250, 515, 533, 543 |
| AcoI | YGGCCR | 3 cut(s) | 247, 272, 534 |
| AfaI | GTAC | 1 cut(s) | 555 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 28, 54, 233, 304, 573 |
| AgeI | ACCGGT | 1 cut(s) | 10 |
| AgsI | TTSAA | 2 cut(s) | 154, 378 |
| AluBI | AGCT | 2 cut(s) | 181, 320 |
| AluI | AGCT | 2 cut(s) | 181, 320 |
| Alw21I | GWGCWC | 2 cut(s) | 460, 610 |
| Alw26I | GTCTC | 1 cut(s) | 361 |
| Ama87I | CYCGRG | 2 cut(s) | 133, 614 |
| AoxI | GGCC | 5 cut(s) | 212, 247, 272, 534, 578 |
| ApeKI | GCWGC | 2 cut(s) | 451, 505 |
| AsiGI | ACCGGT | 1 cut(s) | 10 |
| AspLEI | GCGC | 2 cut(s) | 326, 547 |
| AspS9I | GGNCC | 2 cut(s) | 57, 443 |
| AsuC2I | CCSGG | 2 cut(s) | 271, 347 |
| AvaI | CYCGRG | 2 cut(s) | 133, 614 |
| AvaII | GGWCC | 2 cut(s) | 57, 443 |
| BaeGI | GKGCMC | 2 cut(s) | 271, 568 |
| BanI | GGYRCC | 1 cut(s) | 277 |
| BanII | GRGCYC | 3 cut(s) | 258, 297, 429 |
| BauI | CACGAG | 1 cut(s) | 603 |
| BbsI | GAAGAC | 1 cut(s) | 478 |
| Bbv12I | GWGCWC | 2 cut(s) | 460, 610 |
| BbvI | GCAGC | 2 cut(s) | 438, 517 |
| BccI | CCATC | 2 cut(s) | 47, 586 |
| BceAI | ACGGC | 4 cut(s) | 32, 227, 521, 536 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 167, 201 |
| BcnI | CCSGG | 2 cut(s) | 271, 347 |
| BcoDI | GTCTC | 1 cut(s) | 361 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 275 |
| BisI | GCNGC | 5 cut(s) | 207, 250, 452, 506, 534 |
| BlsI | GCNGC | 5 cut(s) | 208, 251, 453, 507, 535 |
| Bme1390I | CCNGG | 2 cut(s) | 271, 347 |
| Bme18I | GGWCC | 2 cut(s) | 57, 443 |
| BmeT110I | CYCGRG | 2 cut(s) | 133, 614 |
| BmgT120I | GGNCC | 2 cut(s) | 57, 443 |
| BmiI | GGNNCC | 5 cut(s) | 58, 110, 238, 279, 444 |
| BmrFI | CCNGG | 2 cut(s) | 271, 347 |
| BmsI | GCATC | 3 cut(s) | 34, 147, 193 |
| BpiI | GAAGAC | 1 cut(s) | 478 |
| Bpu10I | CCTNAGC | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 2 cut(s) | 285, 350 |
| BpuMI | CCSGG | 2 cut(s) | 271, 347 |
| Bsa29I | ATCGAT | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 2 cut(s) | 48, 484 |
| BsaWI | WCCGGW | 1 cut(s) | 10 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 28, 54, 233, 304, 573 |
| Bse118I | RCCGGY | 3 cut(s) | 10, 245, 274 |
| BseCI | ATCGAT | 1 cut(s) | 42 |
| BseDI | CCNNGG | 2 cut(s) | 48, 484 |
| BseGI | GGATG | 2 cut(s) | 58, 363 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 28, 54, 233, 304, 573 |
| BseRI | GAGGAG | 3 cut(s) | 213, 229, 332 |
| BseSI | GKGCMC | 2 cut(s) | 271, 568 |
| BseX3I | CGGCCG | 3 cut(s) | 247, 272, 534 |
| BseXI | GCAGC | 2 cut(s) | 438, 517 |
| Bsh1236I | CGCG | 3 cut(s) | 252, 324, 545 |
| Bsh1285I | CGRYCG | 4 cut(s) | 250, 275, 422, 537 |
| BshFI | GGCC | 5 cut(s) | 214, 249, 274, 536, 580 |
| BshNI | GGYRCC | 1 cut(s) | 277 |
| BshTI | ACCGGT | 1 cut(s) | 10 |
| BshVI | ATCGAT | 1 cut(s) | 42 |
| BsiEI | CGRYCG | 4 cut(s) | 250, 275, 422, 537 |
| BsiHKAI | GWGCWC | 2 cut(s) | 460, 610 |
| BsiHKCI | CYCGRG | 2 cut(s) | 133, 614 |
| BsiSI | CCGG | 5 cut(s) | 11, 246, 271, 275, 346 |
| BslFI | GGGAC | 2 cut(s) | 70, 376 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 28, 54, 233, 304, 573 |
| BsmAI | GTCTC | 1 cut(s) | 361 |
| BsmBI | CGTCTC | 1 cut(s) | 361 |
| BsmFI | GGGAC | 2 cut(s) | 70, 376 |
| BsnI | GGCC | 5 cut(s) | 214, 249, 274, 536, 580 |
| BsoBI | CYCGRG | 2 cut(s) | 133, 614 |
| Bsp1286I | GDGCHC | 7 cut(s) | 258, 271, 297, 429, 460, 568, 610 |
| BspACI | CCGC | 5 cut(s) | 207, 250, 515, 533, 543 |
| BspANI | GGCC | 5 cut(s) | 214, 249, 274, 536, 580 |
| BspDI | ATCGAT | 1 cut(s) | 42 |
| BspFNI | CGCG | 3 cut(s) | 252, 324, 545 |
| BspLI | GGNNCC | 5 cut(s) | 58, 110, 238, 279, 444 |
| BspQI | GCTCTTC | 1 cut(s) | 615 |
| BspT107I | GGYRCC | 1 cut(s) | 277 |
| BsrFI | RCCGGY | 3 cut(s) | 10, 245, 274 |
| BssAI | RCCGGY | 3 cut(s) | 10, 245, 274 |
| BssECI | CCNNGG | 2 cut(s) | 48, 484 |
| BssSI | CACGAG | 1 cut(s) | 603 |
| Bst2BI | CACGAG | 1 cut(s) | 603 |
| Bst4CI | ACNGT | 2 cut(s) | 117, 266 |
| Bst6I | CTCTTC | 2 cut(s) | 134, 615 |
| BstC8I | GCNNGC | 8 cut(s) | 6, 190, 254, 276, 322, 456, 460, 549 |
| BstDEI | CTNAG | 1 cut(s) | 33 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstF5I | GGATG | 2 cut(s) | 58, 363 |
| BstFNI | CGCG | 3 cut(s) | 252, 324, 545 |
| BstHHI | GCGC | 2 cut(s) | 326, 547 |
| BstMAI | GTCTC | 1 cut(s) | 361 |
| BstMCI | CGRYCG | 4 cut(s) | 250, 275, 422, 537 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 275, 514, 542, 557 |
| BstSCI | CCNGG | 2 cut(s) | 269, 345 |
| BstSLI | GKGCMC | 2 cut(s) | 271, 568 |
| BstUI | CGCG | 3 cut(s) | 252, 324, 545 |
| BstV1I | GCAGC | 2 cut(s) | 438, 517 |
| BstV2I | GAAGAC | 1 cut(s) | 478 |
| BstZI | CGGCCG | 3 cut(s) | 247, 272, 534 |
| Bsu15I | ATCGAT | 1 cut(s) | 42 |
| BsuRI | GGCC | 5 cut(s) | 214, 249, 274, 536, 580 |
| BsuTUI | ATCGAT | 1 cut(s) | 42 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsCI | GGATG | 2 cut(s) | 58, 363 |
| BtsIMutI | CAGTG | 1 cut(s) | 271 |
| Cac8I | GCNNGC | 8 cut(s) | 6, 190, 254, 276, 322, 456, 460, 549 |
| CfoI | GCGC | 2 cut(s) | 326, 547 |
| Cfr10I | RCCGGY | 3 cut(s) | 10, 245, 274 |
| Cfr13I | GGNCC | 2 cut(s) | 57, 443 |
| ClaI | ATCGAT | 1 cut(s) | 42 |
| CseI | GACGC | 1 cut(s) | 378 |
| Csp6I | GTAC | 1 cut(s) | 554 |
| CspAI | ACCGGT | 1 cut(s) | 10 |
| CviQI | GTAC | 1 cut(s) | 554 |
| DdeI | CTNAG | 1 cut(s) | 33 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 379 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 379 |
| EaeI | YGGCCR | 3 cut(s) | 247, 272, 534 |
| EagI | CGGCCG | 3 cut(s) | 247, 272, 534 |
| Eam1104I | CTCTTC | 2 cut(s) | 134, 615 |
| EarI | CTCTTC | 2 cut(s) | 134, 615 |
| EclXI | CGGCCG | 3 cut(s) | 247, 272, 534 |
| Eco24I | GRGCYC | 3 cut(s) | 258, 297, 429 |
| Eco32I | GATATC | 1 cut(s) | 398 |
| Eco47I | GGWCC | 2 cut(s) | 57, 443 |
| Eco52I | CGGCCG | 3 cut(s) | 247, 272, 534 |
| Eco88I | CYCGRG | 2 cut(s) | 133, 614 |
| EcoO109I | RGGNCCY | 1 cut(s) | 443 |
| EcoRV | GATATC | 1 cut(s) | 398 |
| EcoT38I | GRGCYC | 3 cut(s) | 258, 297, 429 |
| Esp3I | CGTCTC | 1 cut(s) | 361 |
| FaiI | YATR | 3 cut(s) | 72, 120, 165 |
| FaqI | GGGAC | 2 cut(s) | 70, 376 |
| FauI | CCCGC | 1 cut(s) | 522 |
| FblI | GTMKAC | 1 cut(s) | 490 |
| Fnu4HI | GCNGC | 5 cut(s) | 207, 250, 452, 506, 534 |
| FokI | GGATG | 2 cut(s) | 65, 370 |
| FriOI | GRGCYC | 3 cut(s) | 258, 297, 429 |
| Fsp4HI | GCNGC | 5 cut(s) | 207, 250, 452, 506, 534 |
| FspBI | CTAG | 1 cut(s) | 317 |
| GlaI | GCGC | 2 cut(s) | 325, 546 |
| GluI | GCNGC | 5 cut(s) | 207, 250, 452, 506, 534 |
| HaeIII | GGCC | 5 cut(s) | 214, 249, 274, 536, 580 |
| HapII | CCGG | 5 cut(s) | 11, 246, 271, 275, 346 |
| HgaI | GACGC | 1 cut(s) | 378 |
| HhaI | GCGC | 2 cut(s) | 326, 547 |
| Hin6I | GCGC | 2 cut(s) | 324, 545 |
| HinP1I | GCGC | 2 cut(s) | 324, 545 |
| HincII | GTYRAC | 1 cut(s) | 16 |
| HindII | GTYRAC | 1 cut(s) | 16 |
| HinfI | GANTC | 2 cut(s) | 286, 596 |
| HpaII | CCGG | 5 cut(s) | 11, 246, 271, 275, 346 |
| Hpy166II | GTNNAC | 2 cut(s) | 16, 491 |
| Hpy188I | TCNGA | 1 cut(s) | 108 |
| Hpy188III | TCNNGA | 5 cut(s) | 133, 290, 302, 393, 616 |
| Hpy8I | GTNNAC | 2 cut(s) | 16, 491 |
| HpyAV | CCTTC | 3 cut(s) | 59, 456, 519 |
| HpyCH4III | ACNGT | 2 cut(s) | 117, 266 |
| HpyCH4IV | ACGT | 1 cut(s) | 380 |
| HpyCH4V | TGCA | 1 cut(s) | 8 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 275, 514, 542, 557 |
| HpyF3I | CTNAG | 1 cut(s) | 33 |
| HpySE526I | ACGT | 1 cut(s) | 380 |
| HspAI | GCGC | 2 cut(s) | 324, 545 |
| KroI | GCCGGC | 1 cut(s) | 274 |
| KroNI | GCCGGC | 1 cut(s) | 276 |
| LguI | GCTCTTC | 1 cut(s) | 615 |
| LmnI | GCTCC | 1 cut(s) | 242 |
| LpnPI | CCDG | 6 cut(s) | 24, 219, 259, 284, 288, 359 |
| Lsp1109I | GCAGC | 2 cut(s) | 438, 517 |
| LweI | GCATC | 3 cut(s) | 34, 147, 193 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MaeII | ACGT | 1 cut(s) | 380 |
| MaeIII | GTNAC | 3 cut(s) | 260, 334, 538 |
| MboII | GAAGA | 4 cut(s) | 74, 121, 483, 602 |
| MhlI | GDGCHC | 7 cut(s) | 258, 271, 297, 429, 460, 568, 610 |
| MluCI | AATT | 2 cut(s) | 100, 149 |
| MmeI | TCCRAC | 1 cut(s) | 86 |
| MroNI | GCCGGC | 1 cut(s) | 274 |
| MseI | TTAA | 2 cut(s) | 99, 438 |
| MspI | CCGG | 5 cut(s) | 11, 246, 271, 275, 346 |
| MspR9I | CCNGG | 2 cut(s) | 271, 347 |
| MvnI | CGCG | 3 cut(s) | 252, 324, 545 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 275, 514, 542, 557 |
| NaeI | GCCGGC | 1 cut(s) | 276 |
| NciI | CCSGG | 2 cut(s) | 271, 347 |
| NgoMIV | GCCGGC | 1 cut(s) | 274 |
| NlaIV | GGNNCC | 5 cut(s) | 58, 110, 238, 279, 444 |
| NmeAIII | GCCGAG | 3 cut(s) | 389, 390, 509 |
| NmuCI | GTSAC | 2 cut(s) | 260, 538 |
| PaeR7I | CTCGAG | 1 cut(s) | 133 |
| PciSI | GCTCTTC | 1 cut(s) | 615 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 386, 466, 481 |
| PdiI | GCCGGC | 1 cut(s) | 276 |
| PfeI | GAWTC | 2 cut(s) | 286, 596 |
| PfoI | TCCNGGA | 1 cut(s) | 345 |
| PinAI | ACCGGT | 1 cut(s) | 10 |
| PkrI | GCNGC | 5 cut(s) | 208, 251, 453, 507, 535 |
| PpuMI | RGGWCCY | 1 cut(s) | 443 |
| Psp5II | RGGWCCY | 1 cut(s) | 443 |
| PspN4I | GGNNCC | 5 cut(s) | 58, 110, 238, 279, 444 |
| PspPI | GGNCC | 2 cut(s) | 57, 443 |
| PspPPI | RGGWCCY | 1 cut(s) | 443 |
| RsaI | GTAC | 1 cut(s) | 555 |
| RsaNI | GTAC | 1 cut(s) | 554 |
| SapI | GCTCTTC | 1 cut(s) | 615 |
| SaqAI | TTAA | 2 cut(s) | 99, 438 |
| SatI | GCNGC | 5 cut(s) | 207, 250, 452, 506, 534 |
| Sau96I | GGNCC | 2 cut(s) | 57, 443 |
| ScrFI | CCNGG | 2 cut(s) | 271, 347 |
| SduI | GDGCHC | 7 cut(s) | 258, 271, 297, 429, 460, 568, 610 |
| SetI | ASST | 7 cut(s) | 21, 183, 223, 322, 336, 383, 490 |
| SfaNI | GCATC | 3 cut(s) | 34, 147, 193 |
| Sfr274I | CTCGAG | 1 cut(s) | 133 |
| SinI | GGWCC | 2 cut(s) | 57, 443 |
| SlaI | CTCGAG | 1 cut(s) | 133 |
| SmlI | CTYRAG | 3 cut(s) | 133, 300, 329 |
| SmoI | CTYRAG | 3 cut(s) | 133, 300, 329 |
| Sse9I | AATT | 2 cut(s) | 100, 149 |
| SsiI | CCGC | 5 cut(s) | 207, 250, 515, 533, 543 |
| SspMI | CTAG | 1 cut(s) | 317 |
| StyD4I | CCNGG | 2 cut(s) | 269, 345 |
| TaaI | ACNGT | 2 cut(s) | 117, 266 |
| TaiI | ACGT | 1 cut(s) | 383 |
| TaqI | TCGA | 4 cut(s) | 42, 134, 177, 429 |
| TaqII | GACCGA | 2 cut(s) | 74, 408 |
| TasI | AATT | 2 cut(s) | 100, 149 |
| TauI | GCSGC | 3 cut(s) | 209, 252, 536 |
| TfiI | GAWTC | 2 cut(s) | 286, 596 |
| Tru1I | TTAA | 2 cut(s) | 99, 438 |
| Tru9I | TTAA | 2 cut(s) | 99, 438 |
| TscAI | CASTG | 1 cut(s) | 271 |
| TseFI | GTSAC | 2 cut(s) | 260, 538 |
| TseI | GCWGC | 2 cut(s) | 451, 505 |
| Tsp45I | GTSAC | 2 cut(s) | 260, 538 |
| TspDTI | ATGAA | 2 cut(s) | 374, 540 |
| TspGWI | ACGGA | 2 cut(s) | 385, 508 |
| TspRI | CASTG | 1 cut(s) | 271 |
| VpaK11BI | GGWCC | 2 cut(s) | 57, 443 |
| XhoI | CTCGAG | 1 cut(s) | 133 |
| XmiI | GTMKAC | 1 cut(s) | 490 |
| XspI | CTAG | 1 cut(s) | 317 |