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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 146 |
| AccBSI | CCGCTC | 1 cut(s) | 449 |
| AccI | GTMKAC | 1 cut(s) | 648 |
| AccII | CGCG | 3 cut(s) | 214, 700, 706 |
| AciI | CCGC | 5 cut(s) | 321, 447, 695, 698, 704 |
| AcsI | RAATTY | 1 cut(s) | 167 |
| AcyI | GRCGYC | 1 cut(s) | 312 |
| AfaI | GTAC | 1 cut(s) | 235 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 52, 269, 410, 566, 734, 735, 796 |
| AgeI | ACCGGT | 2 cut(s) | 190, 403 |
| AgsI | TTSAA | 3 cut(s) | 89, 185, 536 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 393, 425 |
| AluBI | AGCT | 2 cut(s) | 75, 358 |
| AluI | AGCT | 2 cut(s) | 75, 358 |
| Alw21I | GWGCWC | 2 cut(s) | 618, 770 |
| Alw26I | GTCTC | 1 cut(s) | 671 |
| AoxI | GGCC | 4 cut(s) | 42, 719, 738, 848 |
| ApaI | GGGCCC | 1 cut(s) | 852 |
| ApeKI | GCWGC | 2 cut(s) | 429, 432 |
| ApoI | RAATTY | 1 cut(s) | 167 |
| AsiGI | ACCGGT | 2 cut(s) | 190, 403 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 418 |
| AspLEI | GCGC | 3 cut(s) | 132, 158, 708 |
| AspS9I | GGNCC | 8 cut(s) | 43, 123, 272, 720, 738, 827, 848, 849 |
| AsuC2I | CCSGG | 4 cut(s) | 18, 329, 504, 567 |
| AsuHPI | GGTGA | 3 cut(s) | 403, 505, 616 |
| AsuII | TTCGAA | 1 cut(s) | 374 |
| AsuNHI | GCTAGC | 1 cut(s) | 332 |
| AvaII | GGWCC | 3 cut(s) | 123, 272, 827 |
| BaeGI | GKGCMC | 1 cut(s) | 852 |
| BanI | GGYRCC | 1 cut(s) | 146 |
| BanII | GRGCYC | 1 cut(s) | 852 |
| BauI | CACGAG | 3 cut(s) | 117, 450, 611 |
| Bbv12I | GWGCWC | 2 cut(s) | 618, 770 |
| BbvI | GCAGC | 2 cut(s) | 416, 419 |
| BccI | CCATC | 2 cut(s) | 521, 629 |
| BceAI | ACGGC | 1 cut(s) | 217 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 16, 50 |
| BcnI | CCSGG | 4 cut(s) | 18, 329, 504, 567 |
| BcoDI | GTCTC | 1 cut(s) | 671 |
| BfaI | CTAG | 2 cut(s) | 333, 856 |
| BfoI | RGCGCY | 2 cut(s) | 133, 159 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 329, 718 |
| BglII | AGATCT | 1 cut(s) | 840 |
| BisI | GCNGC | 4 cut(s) | 430, 433, 695, 698 |
| BlsI | GCNGC | 4 cut(s) | 431, 434, 696, 699 |
| Bme1390I | CCNGG | 4 cut(s) | 18, 329, 504, 567 |
| Bme18I | GGWCC | 3 cut(s) | 123, 272, 827 |
| BmgT120I | GGNCC | 8 cut(s) | 43, 123, 272, 720, 738, 827, 848, 849 |
| BmiI | GGNNCC | 5 cut(s) | 124, 148, 739, 829, 850 |
| BmrFI | CCNGG | 4 cut(s) | 18, 329, 504, 567 |
| BmsI | GCATC | 3 cut(s) | 24, 98, 581 |
| BmtI | GCTAGC | 1 cut(s) | 336 |
| Bpu14I | TTCGAA | 1 cut(s) | 374 |
| BpuEI | CTTGAG | 2 cut(s) | 509, 823 |
| BpuMI | CCSGG | 4 cut(s) | 18, 329, 504, 567 |
| BsaHI | GRCGYC | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 4 cut(s) | 16, 297, 522, 627 |
| BsaWI | WCCGGW | 5 cut(s) | 52, 190, 221, 403, 824 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 375, 405, 651, 681 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 52, 269, 410, 566, 734, 735, 796 |
| Bse118I | RCCGGY | 3 cut(s) | 190, 403, 712 |
| BseDI | CCNNGG | 4 cut(s) | 16, 297, 522, 627 |
| BseGI | GGATG | 4 cut(s) | 113, 520, 532, 572 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 52, 269, 410, 566, 734, 735, 796 |
| BseRI | GAGGAG | 4 cut(s) | 396, 489, 644, 647 |
| BseSI | GKGCMC | 1 cut(s) | 852 |
| BseXI | GCAGC | 2 cut(s) | 416, 419 |
| Bsh1236I | CGCG | 3 cut(s) | 214, 700, 706 |
| Bsh1285I | CGRYCG | 1 cut(s) | 704 |
| BshFI | GGCC | 4 cut(s) | 44, 721, 740, 850 |
| BshNI | GGYRCC | 1 cut(s) | 146 |
| BshTI | ACCGGT | 2 cut(s) | 190, 403 |
| BsiEI | CGRYCG | 1 cut(s) | 704 |
| BsiHKAI | GWGCWC | 2 cut(s) | 618, 770 |
| BslFI | GGGAC | 4 cut(s) | 136, 245, 812, 813 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 52, 269, 410, 566, 734, 735, 796 |
| BsmAI | GTCTC | 1 cut(s) | 671 |
| BsmFI | GGGAC | 4 cut(s) | 136, 245, 812, 813 |
| BsnI | GGCC | 4 cut(s) | 44, 721, 740, 850 |
| Bsp119I | TTCGAA | 1 cut(s) | 374 |
| Bsp120I | GGGCCC | 1 cut(s) | 848 |
| Bsp1286I | GDGCHC | 3 cut(s) | 618, 770, 852 |
| Bsp143I | GATC | 2 cut(s) | 3, 840 |
| Bsp68I | TCGCGA | 1 cut(s) | 214 |
| BspACI | CCGC | 5 cut(s) | 321, 447, 695, 698, 704 |
| BspANI | GGCC | 4 cut(s) | 44, 721, 740, 850 |
| BspFNI | CGCG | 3 cut(s) | 214, 700, 706 |
| BspLI | GGNNCC | 5 cut(s) | 124, 148, 739, 829, 850 |
| BspOI | GCTAGC | 1 cut(s) | 336 |
| BspQI | GCTCTTC | 1 cut(s) | 775 |
| BspT104I | TTCGAA | 1 cut(s) | 374 |
| BspT107I | GGYRCC | 1 cut(s) | 146 |
| BsrBI | CCGCTC | 1 cut(s) | 449 |
| BsrFI | RCCGGY | 3 cut(s) | 190, 403, 712 |
| BssAI | RCCGGY | 3 cut(s) | 190, 403, 712 |
| BssECI | CCNNGG | 4 cut(s) | 16, 297, 522, 627 |
| BssMI | GATC | 2 cut(s) | 3, 840 |
| BssNI | GRCGYC | 1 cut(s) | 312 |
| BssSI | CACGAG | 3 cut(s) | 117, 450, 611 |
| Bst2BI | CACGAG | 3 cut(s) | 117, 450, 611 |
| Bst6I | CTCTTC | 4 cut(s) | 84, 381, 409, 775 |
| BstACI | GRCGYC | 1 cut(s) | 312 |
| BstBI | TTCGAA | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 8 cut(s) | 77, 334, 360, 477, 481, 618, 710, 714 |
| BstDSI | CCRYGG | 1 cut(s) | 297 |
| BstF5I | GGATG | 4 cut(s) | 113, 520, 532, 572 |
| BstFNI | CGCG | 3 cut(s) | 214, 700, 706 |
| BstH2I | RGCGCY | 2 cut(s) | 133, 159 |
| BstHHI | GCGC | 3 cut(s) | 132, 158, 708 |
| BstKTI | GATC | 2 cut(s) | 6, 843 |
| BstMAI | GTCTC | 1 cut(s) | 671 |
| BstMBI | GATC | 2 cut(s) | 3, 840 |
| BstMCI | CGRYCG | 1 cut(s) | 704 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 27, 153, 329, 546, 703, 718, 774 |
| BstSCI | CCNGG | 4 cut(s) | 16, 327, 502, 565 |
| BstSLI | GKGCMC | 1 cut(s) | 852 |
| BstUI | CGCG | 3 cut(s) | 214, 700, 706 |
| BstV1I | GCAGC | 2 cut(s) | 416, 419 |
| BstX2I | RGATCY | 1 cut(s) | 840 |
| BstYI | RGATCY | 1 cut(s) | 840 |
| BsuRI | GGCC | 4 cut(s) | 44, 721, 740, 850 |
| BtgI | CCRYGG | 1 cut(s) | 297 |
| BtsCI | GGATG | 4 cut(s) | 113, 520, 532, 572 |
| BtuMI | TCGCGA | 1 cut(s) | 214 |
| Cac8I | GCNNGC | 8 cut(s) | 77, 334, 360, 477, 481, 618, 710, 714 |
| CfoI | GCGC | 3 cut(s) | 132, 158, 708 |
| Cfr10I | RCCGGY | 3 cut(s) | 190, 403, 712 |
| Cfr13I | GGNCC | 8 cut(s) | 43, 123, 272, 720, 738, 827, 848, 849 |
| CseI | GACGC | 1 cut(s) | 301 |
| Csp6I | GTAC | 1 cut(s) | 234 |
| CspAI | ACCGGT | 2 cut(s) | 190, 403 |
| CviAII | CATG | 1 cut(s) | 368 |
| CviQI | GTAC | 1 cut(s) | 234 |
| DpnI | GATC | 2 cut(s) | 5, 842 |
| DpnII | GATC | 2 cut(s) | 3, 840 |
| Eam1104I | CTCTTC | 4 cut(s) | 84, 381, 409, 775 |
| EarI | CTCTTC | 4 cut(s) | 84, 381, 409, 775 |
| Eco24I | GRGCYC | 1 cut(s) | 852 |
| Eco32I | GATATC | 1 cut(s) | 556 |
| Eco47I | GGWCC | 3 cut(s) | 123, 272, 827 |
| EcoO109I | RGGNCCY | 1 cut(s) | 738 |
| EcoRV | GATATC | 1 cut(s) | 556 |
| EcoT38I | GRGCYC | 1 cut(s) | 852 |
| FaeI | CATG | 1 cut(s) | 371 |
| FaiI | YATR | 3 cut(s) | 65, 293, 369 |
| FaqI | GGGAC | 4 cut(s) | 136, 245, 812, 813 |
| FatI | CATG | 1 cut(s) | 367 |
| FauI | CCCGC | 1 cut(s) | 328 |
| FblI | GTMKAC | 1 cut(s) | 648 |
| Fnu4HI | GCNGC | 4 cut(s) | 430, 433, 695, 698 |
| FokI | GGATG | 4 cut(s) | 120, 527, 539, 559 |
| FriOI | GRGCYC | 1 cut(s) | 852 |
| Fsp4HI | GCNGC | 4 cut(s) | 430, 433, 695, 698 |
| FspBI | CTAG | 2 cut(s) | 333, 856 |
| GlaI | GCGC | 3 cut(s) | 131, 157, 707 |
| GluI | GCNGC | 4 cut(s) | 430, 433, 695, 698 |
| HaeII | RGCGCY | 2 cut(s) | 133, 159 |
| HaeIII | GGCC | 4 cut(s) | 44, 721, 740, 850 |
| HgaI | GACGC | 1 cut(s) | 301 |
| HhaI | GCGC | 3 cut(s) | 132, 158, 708 |
| Hin1I | GRCGYC | 1 cut(s) | 312 |
| Hin1II | CATG | 1 cut(s) | 371 |
| Hin6I | GCGC | 3 cut(s) | 130, 156, 706 |
| HinP1I | GCGC | 3 cut(s) | 130, 156, 706 |
| HincII | GTYRAC | 1 cut(s) | 349 |
| HindII | GTYRAC | 1 cut(s) | 349 |
| HinfI | GANTC | 8 cut(s) | 265, 419, 496, 678, 757, 807, 816, 833 |
| HphI | GGTGA | 3 cut(s) | 403, 505, 616 |
| Hpy166II | GTNNAC | 3 cut(s) | 349, 394, 649 |
| Hpy188I | TCNGA | 2 cut(s) | 107, 464 |
| Hpy188III | TCNNGA | 6 cut(s) | 117, 185, 213, 262, 611, 830 |
| Hpy8I | GTNNAC | 3 cut(s) | 349, 394, 649 |
| Hpy99I | CGWCG | 3 cut(s) | 176, 203, 401 |
| HpyAV | CCTTC | 4 cut(s) | 112, 219, 469, 771 |
| HpyCH4IV | ACGT | 1 cut(s) | 396 |
| HpyCH4V | TGCA | 3 cut(s) | 37, 58, 572 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 27, 153, 329, 546, 703, 718, 774 |
| HpySE526I | ACGT | 1 cut(s) | 396 |
| Hsp92I | GRCGYC | 1 cut(s) | 312 |
| Hsp92II | CATG | 1 cut(s) | 371 |
| HspAI | GCGC | 3 cut(s) | 130, 156, 706 |
| KroI | GCCGGC | 1 cut(s) | 712 |
| KroNI | GCCGGC | 1 cut(s) | 714 |
| Kzo9I | GATC | 2 cut(s) | 3, 840 |
| LguI | GCTCTTC | 1 cut(s) | 775 |
| Lsp1109I | GCAGC | 2 cut(s) | 416, 419 |
| LweI | GCATC | 3 cut(s) | 24, 98, 581 |
| MaeI | CTAG | 2 cut(s) | 333, 856 |
| MaeII | ACGT | 1 cut(s) | 396 |
| MaeIII | GTNAC | 4 cut(s) | 22, 493, 508, 608 |
| MalI | GATC | 2 cut(s) | 5, 842 |
| MbiI | CCGCTC | 1 cut(s) | 449 |
| MboI | GATC | 2 cut(s) | 3, 840 |
| MboII | GAAGA | 8 cut(s) | 101, 296, 350, 398, 426, 596, 762, 835 |
| MfeI | CAATTG | 1 cut(s) | 38 |
| MflI | RGATCY | 1 cut(s) | 840 |
| MhlI | GDGCHC | 3 cut(s) | 618, 770, 852 |
| MluCI | AATT | 4 cut(s) | 38, 48, 167, 653 |
| MlyI | GAGTC | 3 cut(s) | 490, 672, 751 |
| MroNI | GCCGGC | 1 cut(s) | 712 |
| MroXI | GAANNNNTTC | 1 cut(s) | 418 |
| MseI | TTAA | 3 cut(s) | 246, 545, 642 |
| MspR9I | CCNGG | 4 cut(s) | 18, 329, 504, 567 |
| MunI | CAATTG | 1 cut(s) | 38 |
| MvnI | CGCG | 3 cut(s) | 214, 700, 706 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 27, 153, 329, 546, 703, 718, 774 |
| NaeI | GCCGGC | 1 cut(s) | 714 |
| NciI | CCSGG | 4 cut(s) | 18, 329, 504, 567 |
| NdeII | GATC | 2 cut(s) | 3, 840 |
| NgoMIV | GCCGGC | 1 cut(s) | 712 |
| NheI | GCTAGC | 1 cut(s) | 332 |
| NlaIII | CATG | 1 cut(s) | 371 |
| NlaIV | GGNNCC | 5 cut(s) | 124, 148, 739, 829, 850 |
| NmeAIII | GCCGAG | 1 cut(s) | 547 |
| NmuCI | GTSAC | 2 cut(s) | 493, 608 |
| NruI | TCGCGA | 1 cut(s) | 214 |
| NspV | TTCGAA | 1 cut(s) | 374 |
| PciSI | GCTCTTC | 1 cut(s) | 775 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 624 |
| PdiI | GCCGGC | 1 cut(s) | 714 |
| PdmI | GAANNNNTTC | 1 cut(s) | 418 |
| PfeI | GAWTC | 5 cut(s) | 265, 419, 807, 816, 833 |
| PfoI | TCCNGGA | 1 cut(s) | 502 |
| PinAI | ACCGGT | 2 cut(s) | 190, 403 |
| PkrI | GCNGC | 4 cut(s) | 431, 434, 696, 699 |
| PleI | GAGTC | 3 cut(s) | 490, 672, 751 |
| PpsI | GAGTC | 3 cut(s) | 490, 672, 751 |
| PspN4I | GGNNCC | 5 cut(s) | 124, 148, 739, 829, 850 |
| PspOMI | GGGCCC | 1 cut(s) | 848 |
| PspPI | GGNCC | 8 cut(s) | 43, 123, 272, 720, 738, 827, 848, 849 |
| PsuI | RGATCY | 1 cut(s) | 840 |
| RruI | TCGCGA | 1 cut(s) | 214 |
| RsaI | GTAC | 1 cut(s) | 235 |
| RsaNI | GTAC | 1 cut(s) | 234 |
| SapI | GCTCTTC | 1 cut(s) | 775 |
| SaqAI | TTAA | 3 cut(s) | 246, 545, 642 |
| SatI | GCNGC | 4 cut(s) | 430, 433, 695, 698 |
| Sau3AI | GATC | 2 cut(s) | 3, 840 |
| Sau96I | GGNCC | 8 cut(s) | 43, 123, 272, 720, 738, 827, 848, 849 |
| SchI | GAGTC | 3 cut(s) | 490, 672, 751 |
| ScrFI | CCNGG | 4 cut(s) | 18, 329, 504, 567 |
| SduI | GDGCHC | 3 cut(s) | 618, 770, 852 |
| SfaNI | GCATC | 3 cut(s) | 24, 98, 581 |
| SfuI | TTCGAA | 1 cut(s) | 374 |
| SinI | GGWCC | 3 cut(s) | 123, 272, 827 |
| SmlI | CTYRAG | 2 cut(s) | 488, 802 |
| SmoI | CTYRAG | 2 cut(s) | 488, 802 |
| Sse9I | AATT | 4 cut(s) | 38, 48, 167, 653 |
| SsiI | CCGC | 5 cut(s) | 321, 447, 695, 698, 704 |
| SspMI | CTAG | 2 cut(s) | 333, 856 |
| StyD4I | CCNGG | 4 cut(s) | 16, 327, 502, 565 |
| TaiI | ACGT | 1 cut(s) | 399 |
| TaqI | TCGA | 4 cut(s) | 171, 279, 374, 399 |
| TasI | AATT | 4 cut(s) | 38, 48, 167, 653 |
| TauI | GCSGC | 2 cut(s) | 697, 700 |
| TfiI | GAWTC | 5 cut(s) | 265, 419, 807, 816, 833 |
| Tru1I | TTAA | 3 cut(s) | 246, 545, 642 |
| Tru9I | TTAA | 3 cut(s) | 246, 545, 642 |
| TseFI | GTSAC | 2 cut(s) | 493, 608 |
| TseI | GCWGC | 2 cut(s) | 429, 432 |
| Tsp45I | GTSAC | 2 cut(s) | 493, 608 |
| TspDTI | ATGAA | 3 cut(s) | 531, 628, 699 |
| TspGWI | ACGGA | 3 cut(s) | 286, 527, 565 |
| VpaK11BI | GGWCC | 3 cut(s) | 123, 272, 827 |
| XapI | RAATTY | 1 cut(s) | 167 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 648 |
| XmnI | GAANNNNTTC | 1 cut(s) | 418 |
| XspI | CTAG | 2 cut(s) | 333, 856 |