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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 5 cut(s) | 241, 243, 282, 341, 348 |
| AccIII | TCCGGA | 1 cut(s) | 312 |
| AciI | CCGC | 9 cut(s) | 100, 239, 280, 321, 346, 482, 530, 543, 643 |
| AclWI | GGATC | 5 cut(s) | 323, 359, 515, 528, 634 |
| AcoI | YGGCCR | 3 cut(s) | 215, 582, 663 |
| AcyI | GRCGYC | 1 cut(s) | 165 |
| AfaI | GTAC | 1 cut(s) | 753 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 53, 327, 369, 539, 649 |
| AgeI | ACCGGT | 1 cut(s) | 631 |
| AgsI | TTSAA | 3 cut(s) | 416, 503, 612 |
| AluBI | AGCT | 3 cut(s) | 124, 660, 766 |
| AluI | AGCT | 3 cut(s) | 124, 660, 766 |
| Alw21I | GWGCWC | 2 cut(s) | 126, 426 |
| Alw26I | GTCTC | 2 cut(s) | 100, 540 |
| AlwI | GGATC | 5 cut(s) | 323, 359, 515, 528, 634 |
| Ama87I | CYCGRG | 2 cut(s) | 5, 231 |
| Aor13HI | TCCGGA | 1 cut(s) | 312 |
| AoxI | GGCC | 3 cut(s) | 215, 582, 663 |
| AsiGI | ACCGGT | 1 cut(s) | 631 |
| AspLEI | GCGC | 3 cut(s) | 243, 572, 737 |
| AspS9I | GGNCC | 2 cut(s) | 235, 634 |
| AsuC2I | CCSGG | 2 cut(s) | 29, 723 |
| AsuHPI | GGTGA | 2 cut(s) | 47, 621 |
| AvaI | CYCGRG | 2 cut(s) | 5, 231 |
| AvaII | GGWCC | 2 cut(s) | 235, 634 |
| BamHI | GGATCC | 1 cut(s) | 520 |
| BanII | GRGCYC | 3 cut(s) | 126, 249, 288 |
| BbsI | GAAGAC | 1 cut(s) | 491 |
| Bbv12I | GWGCWC | 2 cut(s) | 126, 426 |
| BccI | CCATC | 1 cut(s) | 46 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BcnI | CCSGG | 2 cut(s) | 29, 723 |
| BcoDI | GTCTC | 2 cut(s) | 100, 540 |
| BfaI | CTAG | 1 cut(s) | 686 |
| BfoI | RGCGCY | 2 cut(s) | 573, 738 |
| BisI | GCNGC | 2 cut(s) | 321, 346 |
| BlsI | GCNGC | 2 cut(s) | 322, 347 |
| Bme1390I | CCNGG | 2 cut(s) | 29, 723 |
| Bme18I | GGWCC | 2 cut(s) | 235, 634 |
| BmeT110I | CYCGRG | 2 cut(s) | 5, 231 |
| BmgT120I | GGNCC | 2 cut(s) | 235, 634 |
| BmiI | GGNNCC | 4 cut(s) | 236, 237, 522, 636 |
| BmrFI | CCNGG | 2 cut(s) | 29, 723 |
| BmsI | GCATC | 3 cut(s) | 654, 679, 701 |
| BpiI | GAAGAC | 1 cut(s) | 491 |
| BpuEI | CTTGAG | 2 cut(s) | 246, 276 |
| BpuMI | CCSGG | 2 cut(s) | 29, 723 |
| BsaBI | GATNNNNATC | 1 cut(s) | 644 |
| BsaHI | GRCGYC | 1 cut(s) | 165 |
| BsaJI | CCNNGG | 3 cut(s) | 368, 512, 666 |
| BsaWI | WCCGGW | 2 cut(s) | 312, 631 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 53, 327, 369, 539, 649 |
| Bse118I | RCCGGY | 2 cut(s) | 10, 631 |
| Bse3DI | GCAATG | 2 cut(s) | 82, 718 |
| Bse8I | GATNNNNATC | 1 cut(s) | 644 |
| BseAI | TCCGGA | 1 cut(s) | 312 |
| BseDI | CCNNGG | 3 cut(s) | 368, 512, 666 |
| BseGI | GGATG | 2 cut(s) | 121, 658 |
| BseJI | GATNNNNATC | 1 cut(s) | 644 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 53, 327, 369, 539, 649 |
| BseMI | GCAATG | 2 cut(s) | 82, 718 |
| BseRI | GAGGAG | 3 cut(s) | 464, 516, 683 |
| BseX3I | CGGCCG | 1 cut(s) | 663 |
| Bsh1236I | CGCG | 5 cut(s) | 241, 243, 282, 341, 348 |
| Bsh1285I | CGRYCG | 3 cut(s) | 363, 397, 666 |
| BshFI | GGCC | 3 cut(s) | 217, 584, 665 |
| BshTI | ACCGGT | 1 cut(s) | 631 |
| BsiEI | CGRYCG | 3 cut(s) | 363, 397, 666 |
| BsiHKAI | GWGCWC | 2 cut(s) | 126, 426 |
| BsiHKCI | CYCGRG | 2 cut(s) | 5, 231 |
| BsiSI | CCGG | 7 cut(s) | 11, 28, 103, 267, 313, 632, 723 |
| BslFI | GGGAC | 3 cut(s) | 248, 548, 620 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 53, 327, 369, 539, 649 |
| BsmAI | GTCTC | 2 cut(s) | 100, 540 |
| BsmBI | CGTCTC | 1 cut(s) | 540 |
| BsmFI | GGGAC | 3 cut(s) | 248, 548, 620 |
| BsnI | GGCC | 3 cut(s) | 217, 584, 665 |
| BsoBI | CYCGRG | 2 cut(s) | 5, 231 |
| Bsp1286I | GDGCHC | 4 cut(s) | 126, 249, 288, 426 |
| Bsp13I | TCCGGA | 1 cut(s) | 312 |
| Bsp143I | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| Bsp19I | CCATGG | 1 cut(s) | 368 |
| BspACI | CCGC | 9 cut(s) | 100, 239, 280, 321, 346, 482, 530, 543, 643 |
| BspANI | GGCC | 3 cut(s) | 217, 584, 665 |
| BspEI | TCCGGA | 1 cut(s) | 312 |
| BspFNI | CGCG | 5 cut(s) | 241, 243, 282, 341, 348 |
| BspHI | TCATGA | 1 cut(s) | 142 |
| BspLI | GGNNCC | 4 cut(s) | 236, 237, 522, 636 |
| BspPI | GGATC | 5 cut(s) | 323, 359, 515, 528, 634 |
| BspQI | GCTCTTC | 1 cut(s) | 131 |
| BsrDI | GCAATG | 2 cut(s) | 82, 718 |
| BsrFI | RCCGGY | 2 cut(s) | 10, 631 |
| BssAI | RCCGGY | 2 cut(s) | 10, 631 |
| BssECI | CCNNGG | 3 cut(s) | 368, 512, 666 |
| BssMI | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| BssNI | GRCGYC | 1 cut(s) | 165 |
| BssT1I | CCWWGG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 1 cut(s) | 577 |
| Bst6I | CTCTTC | 2 cut(s) | 131, 594 |
| BstACI | GRCGYC | 1 cut(s) | 165 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 698 |
| BstC8I | GCNNGC | 4 cut(s) | 245, 284, 333, 343 |
| BstDSI | CCRYGG | 1 cut(s) | 368 |
| BstF5I | GGATG | 2 cut(s) | 121, 658 |
| BstFNI | CGCG | 5 cut(s) | 241, 243, 282, 341, 348 |
| BstH2I | RGCGCY | 2 cut(s) | 573, 738 |
| BstHHI | GCGC | 3 cut(s) | 243, 572, 737 |
| BstKTI | GATC | 7 cut(s) | 19, 318, 367, 397, 508, 523, 642 |
| BstMAI | GTCTC | 2 cut(s) | 100, 540 |
| BstMBI | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| BstMCI | CGRYCG | 3 cut(s) | 363, 397, 666 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 567, 698, 772 |
| BstSCI | CCNGG | 2 cut(s) | 27, 721 |
| BstUI | CGCG | 5 cut(s) | 241, 243, 282, 341, 348 |
| BstV2I | GAAGAC | 1 cut(s) | 491 |
| BstX2I | RGATCY | 1 cut(s) | 520 |
| BstYI | RGATCY | 1 cut(s) | 520 |
| BstZI | CGGCCG | 1 cut(s) | 663 |
| BsuRI | GGCC | 3 cut(s) | 217, 584, 665 |
| BtgI | CCRYGG | 1 cut(s) | 368 |
| BtsCI | GGATG | 2 cut(s) | 121, 658 |
| Cac8I | GCNNGC | 4 cut(s) | 245, 284, 333, 343 |
| CciI | TCATGA | 1 cut(s) | 142 |
| CfoI | GCGC | 3 cut(s) | 243, 572, 737 |
| Cfr10I | RCCGGY | 2 cut(s) | 10, 631 |
| Cfr13I | GGNCC | 2 cut(s) | 235, 634 |
| CseI | GACGC | 2 cut(s) | 173, 550 |
| Csp6I | GTAC | 1 cut(s) | 752 |
| CspAI | ACCGGT | 1 cut(s) | 631 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 207, 242 |
| CviAII | CATG | 2 cut(s) | 143, 369 |
| CviQI | GTAC | 1 cut(s) | 752 |
| DpnI | GATC | 7 cut(s) | 18, 317, 366, 396, 507, 522, 641 |
| DpnII | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| EaeI | YGGCCR | 3 cut(s) | 215, 582, 663 |
| EagI | CGGCCG | 1 cut(s) | 663 |
| Eam1104I | CTCTTC | 2 cut(s) | 131, 594 |
| EarI | CTCTTC | 2 cut(s) | 131, 594 |
| EciI | GGCGGA | 2 cut(s) | 519, 558 |
| Ecl136II | GAGCTC | 1 cut(s) | 124 |
| EclXI | CGGCCG | 1 cut(s) | 663 |
| Eco130I | CCWWGG | 1 cut(s) | 368 |
| Eco24I | GRGCYC | 3 cut(s) | 126, 249, 288 |
| Eco32I | GATATC | 2 cut(s) | 155, 172 |
| Eco47I | GGWCC | 2 cut(s) | 235, 634 |
| Eco52I | CGGCCG | 1 cut(s) | 663 |
| Eco53kI | GAGCTC | 1 cut(s) | 124 |
| Eco88I | CYCGRG | 2 cut(s) | 5, 231 |
| EcoICRI | GAGCTC | 1 cut(s) | 124 |
| EcoO109I | RGGNCCY | 1 cut(s) | 235 |
| EcoRV | GATATC | 2 cut(s) | 155, 172 |
| EcoT14I | CCWWGG | 1 cut(s) | 368 |
| EcoT22I | ATGCAT | 1 cut(s) | 694 |
| EcoT38I | GRGCYC | 3 cut(s) | 126, 249, 288 |
| ErhI | CCWWGG | 1 cut(s) | 368 |
| Esp3I | CGTCTC | 1 cut(s) | 540 |
| FaeI | CATG | 2 cut(s) | 146, 372 |
| FaiI | YATR | 7 cut(s) | 144, 162, 252, 370, 409, 467, 494 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 755 |
| FaqI | GGGAC | 3 cut(s) | 248, 548, 620 |
| FatI | CATG | 2 cut(s) | 142, 368 |
| FauI | CCCGC | 1 cut(s) | 246 |
| Fnu4HI | GCNGC | 2 cut(s) | 321, 346 |
| FokI | GGATG | 2 cut(s) | 128, 665 |
| FriOI | GRGCYC | 3 cut(s) | 126, 249, 288 |
| Fsp4HI | GCNGC | 2 cut(s) | 321, 346 |
| FspBI | CTAG | 1 cut(s) | 686 |
| GlaI | GCGC | 3 cut(s) | 242, 571, 736 |
| GluI | GCNGC | 2 cut(s) | 321, 346 |
| HaeII | RGCGCY | 2 cut(s) | 573, 738 |
| HaeIII | GGCC | 3 cut(s) | 217, 584, 665 |
| HapII | CCGG | 7 cut(s) | 11, 28, 103, 267, 313, 632, 723 |
| HgaI | GACGC | 2 cut(s) | 173, 550 |
| HhaI | GCGC | 3 cut(s) | 243, 572, 737 |
| Hin1I | GRCGYC | 1 cut(s) | 165 |
| Hin1II | CATG | 2 cut(s) | 146, 372 |
| Hin6I | GCGC | 3 cut(s) | 241, 570, 735 |
| HinP1I | GCGC | 3 cut(s) | 241, 570, 735 |
| HincII | GTYRAC | 2 cut(s) | 97, 352 |
| HindII | GTYRAC | 2 cut(s) | 97, 352 |
| HinfI | GANTC | 2 cut(s) | 229, 741 |
| HpaII | CCGG | 7 cut(s) | 11, 28, 103, 267, 313, 632, 723 |
| HphI | GGTGA | 2 cut(s) | 47, 621 |
| Hpy166II | GTNNAC | 4 cut(s) | 83, 97, 352, 754 |
| Hpy188I | TCNGA | 2 cut(s) | 196, 360 |
| Hpy188III | TCNNGA | 7 cut(s) | 130, 143, 233, 293, 313, 503, 637 |
| Hpy8I | GTNNAC | 4 cut(s) | 83, 97, 352, 754 |
| HpyAV | CCTTC | 1 cut(s) | 511 |
| HpyCH4III | ACNGT | 1 cut(s) | 577 |
| HpyCH4IV | ACGT | 1 cut(s) | 549 |
| HpyCH4V | TGCA | 3 cut(s) | 692, 701, 775 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 567, 698, 772 |
| HpySE526I | ACGT | 1 cut(s) | 549 |
| Hsp92I | GRCGYC | 1 cut(s) | 165 |
| Hsp92II | CATG | 2 cut(s) | 146, 372 |
| HspAI | GCGC | 3 cut(s) | 241, 570, 735 |
| KflI | GGGWCCC | 1 cut(s) | 235 |
| Kpn2I | TCCGGA | 1 cut(s) | 312 |
| Kzo9I | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| LguI | GCTCTTC | 1 cut(s) | 131 |
| LmnI | GCTCC | 2 cut(s) | 49, 477 |
| LpnPI | CCDG | 7 cut(s) | 24, 41, 116, 280, 326, 645, 736 |
| LweI | GCATC | 3 cut(s) | 654, 679, 701 |
| MaeI | CTAG | 1 cut(s) | 686 |
| MaeII | ACGT | 1 cut(s) | 549 |
| MalI | GATC | 7 cut(s) | 18, 317, 366, 396, 507, 522, 641 |
| MboI | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| MboII | GAAGA | 9 cut(s) | 11, 118, 209, 386, 389, 425, 431, 491, 581 |
| MflI | RGATCY | 1 cut(s) | 520 |
| MhlI | GDGCHC | 4 cut(s) | 126, 249, 288, 426 |
| MluCI | AATT | 5 cut(s) | 176, 224, 270, 623, 745 |
| MlyI | GAGTC | 2 cut(s) | 223, 735 |
| MmeI | TCCRAC | 1 cut(s) | 383 |
| Mph1103I | ATGCAT | 1 cut(s) | 694 |
| MroI | TCCGGA | 1 cut(s) | 312 |
| MseI | TTAA | 2 cut(s) | 705, 761 |
| MspI | CCGG | 7 cut(s) | 11, 28, 103, 267, 313, 632, 723 |
| MspR9I | CCNGG | 2 cut(s) | 29, 723 |
| MvnI | CGCG | 5 cut(s) | 241, 243, 282, 341, 348 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 567, 698, 772 |
| NciI | CCSGG | 2 cut(s) | 29, 723 |
| NcoI | CCATGG | 1 cut(s) | 368 |
| NdeII | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| NlaIII | CATG | 2 cut(s) | 146, 372 |
| NlaIV | GGNNCC | 4 cut(s) | 236, 237, 522, 636 |
| NmeAIII | GCCGAG | 4 cut(s) | 193, 537, 641, 691 |
| NsiI | ATGCAT | 1 cut(s) | 694 |
| PaeR7I | CTCGAG | 1 cut(s) | 5 |
| PagI | TCATGA | 1 cut(s) | 142 |
| PciSI | GCTCTTC | 1 cut(s) | 131 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 171, 345, 424 |
| PfoI | TCCNGGA | 1 cut(s) | 721 |
| PinAI | ACCGGT | 1 cut(s) | 631 |
| PkrI | GCNGC | 2 cut(s) | 322, 347 |
| Ple19I | CGATCG | 1 cut(s) | 397 |
| PleI | GAGTC | 2 cut(s) | 223, 735 |
| PpsI | GAGTC | 2 cut(s) | 223, 735 |
| PpuMI | RGGWCCY | 1 cut(s) | 235 |
| Psp124BI | GAGCTC | 1 cut(s) | 126 |
| Psp5II | RGGWCCY | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 4 cut(s) | 236, 237, 522, 636 |
| PspPI | GGNCC | 2 cut(s) | 235, 634 |
| PspPPI | RGGWCCY | 1 cut(s) | 235 |
| PspXI | VCTCGAGB | 1 cut(s) | 5 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 396, 428 |
| PsuI | RGATCY | 1 cut(s) | 520 |
| PvuI | CGATCG | 1 cut(s) | 397 |
| RsaI | GTAC | 1 cut(s) | 753 |
| RsaNI | GTAC | 1 cut(s) | 752 |
| SacI | GAGCTC | 1 cut(s) | 126 |
| SapI | GCTCTTC | 1 cut(s) | 131 |
| SaqAI | TTAA | 2 cut(s) | 705, 761 |
| SatI | GCNGC | 2 cut(s) | 321, 346 |
| Sau3AI | GATC | 7 cut(s) | 16, 315, 364, 394, 505, 520, 639 |
| Sau96I | GGNCC | 2 cut(s) | 235, 634 |
| SchI | GAGTC | 2 cut(s) | 223, 735 |
| ScrFI | CCNGG | 2 cut(s) | 29, 723 |
| SduI | GDGCHC | 4 cut(s) | 126, 249, 288, 426 |
| SetI | ASST | 6 cut(s) | 126, 499, 552, 598, 662, 768 |
| SfaNI | GCATC | 3 cut(s) | 654, 679, 701 |
| Sfr274I | CTCGAG | 1 cut(s) | 5 |
| SinI | GGWCC | 2 cut(s) | 235, 634 |
| SlaI | CTCGAG | 1 cut(s) | 5 |
| SmlI | CTYRAG | 3 cut(s) | 5, 261, 291 |
| SmoI | CTYRAG | 3 cut(s) | 5, 261, 291 |
| Sse9I | AATT | 5 cut(s) | 176, 224, 270, 623, 745 |
| SsiI | CCGC | 9 cut(s) | 100, 239, 280, 321, 346, 482, 530, 543, 643 |
| SspMI | CTAG | 1 cut(s) | 686 |
| SstI | GAGCTC | 1 cut(s) | 126 |
| StyD4I | CCNGG | 2 cut(s) | 27, 721 |
| StyI | CCWWGG | 1 cut(s) | 368 |
| TaaI | ACNGT | 1 cut(s) | 577 |
| TaiI | ACGT | 1 cut(s) | 552 |
| TaqI | TCGA | 3 cut(s) | 6, 174, 187 |
| TaqII | GACCGA | 1 cut(s) | 377 |
| TasI | AATT | 5 cut(s) | 176, 224, 270, 623, 745 |
| TauI | GCSGC | 2 cut(s) | 323, 348 |
| Tru1I | TTAA | 2 cut(s) | 705, 761 |
| Tru9I | TTAA | 2 cut(s) | 705, 761 |
| TspDTI | ATGAA | 7 cut(s) | 131, 159, 216, 294, 396, 425, 436 |
| TspGWI | ACGGA | 3 cut(s) | 36, 446, 739 |
| VpaK11BI | GGWCC | 2 cut(s) | 235, 634 |
| XhoI | CTCGAG | 1 cut(s) | 5 |
| XspI | CTAG | 1 cut(s) | 686 |
| Zsp2I | ATGCAT | 1 cut(s) | 694 |