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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2496 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 948 |
| Acc16I | TGCGCA | 1 cut(s) | 1698 |
| Acc36I | ACCTGC | 1 cut(s) | 1090 |
| Acc65I | GGTACC | 1 cut(s) | 2407 |
| AccB1I | GGYRCC | 2 cut(s) | 400, 2407 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 106, 743, 776, 2171 |
| AccIII | TCCGGA | 3 cut(s) | 42, 2101, 2264 |
| AcoI | YGGCCR | 5 cut(s) | 93, 473, 621, 778, 2541 |
| AcuI | CTGAAG | 4 cut(s) | 354, 613, 837, 969 |
| AcyI | GRCGYC | 1 cut(s) | 420 |
| AgsI | TTSAA | 9 cut(s) | 239, 824, 1484, 1841, 1916, 1993, 2024, 2034, 2477 |
| AjnI | CCWGG | 9 cut(s) | 253, 422, 512, 1429, 1495, 1703, 1830, 2229, 2296 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2154, 2186 |
| Alw21I | GWGCWC | 1 cut(s) | 1579 |
| Alw26I | GTCTC | 5 cut(s) | 8, 1929, 2095, 2262, 2467 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 992 |
| Aor13HI | TCCGGA | 3 cut(s) | 42, 2101, 2264 |
| ApaI | GGGCCC | 1 cut(s) | 459 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 599, 631 |
| AseI | ATTAAT | 1 cut(s) | 1674 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1628 |
| Asp718I | GGTACC | 1 cut(s) | 2407 |
| AspLEI | GCGC | 8 cut(s) | 302, 496, 755, 885, 1325, 1565, 1699, 2258 |
| AsuC2I | CCSGG | 5 cut(s) | 466, 726, 973, 1867, 2283 |
| AsuHPI | GGTGA | 6 cut(s) | 814, 1007, 1369, 1624, 2286, 2395 |
| AsuII | TTCGAA | 1 cut(s) | 1819 |
| AvaII | GGWCC | 5 cut(s) | 895, 1408, 1433, 2070, 2202 |
| AxyI | CCTNAGG | 1 cut(s) | 1161 |
| BaeGI | GKGCMC | 1 cut(s) | 459 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 39 |
| BalI | TGGCCA | 1 cut(s) | 780 |
| BamHI | GGATCC | 2 cut(s) | 39, 2177 |
| BanI | GGYRCC | 2 cut(s) | 400, 2407 |
| BanII | GRGCYC | 4 cut(s) | 459, 1527, 1544, 1579 |
| BauI | CACGAG | 1 cut(s) | 1256 |
| BbsI | GAAGAC | 1 cut(s) | 803 |
| Bbv12I | GWGCWC | 1 cut(s) | 1579 |
| BbvCI | CCTCAGC | 1 cut(s) | 546 |
| BccI | CCATC | 8 cut(s) | 533, 632, 1514, 2009, 2049, 2280, 2286, 2305 |
| BceAI | ACGGC | 2 cut(s) | 1878, 1923 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 599, 633, 1057, 1091 |
| BciT130I | CCWGG | 9 cut(s) | 255, 424, 514, 1431, 1497, 1705, 1832, 2231, 2298 |
| BclI | TGATCA | 1 cut(s) | 274 |
| BcnI | CCSGG | 5 cut(s) | 466, 726, 973, 1867, 2283 |
| BcoDI | GTCTC | 5 cut(s) | 8, 1929, 2095, 2262, 2467 |
| BfaI | CTAG | 4 cut(s) | 18, 1187, 1455, 1892 |
| BfmI | CTRYAG | 3 cut(s) | 268, 519, 1854 |
| BfoI | RGCGCY | 1 cut(s) | 1326 |
| BfuAI | ACCTGC | 1 cut(s) | 1090 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 384, 1016, 1709 |
| BlpI | GCTNAGC | 1 cut(s) | 1965 |
| BmcAI | AGTACT | 3 cut(s) | 1317, 1586, 2029 |
| Bme18I | GGWCC | 5 cut(s) | 895, 1408, 1433, 2070, 2202 |
| BmrI | ACTGGG | 2 cut(s) | 1088, 1334 |
| BmsI | GCATC | 6 cut(s) | 13, 180, 679, 1071, 1574, 1972 |
| BmuI | ACTGGG | 2 cut(s) | 1088, 1334 |
| BpiI | GAAGAC | 1 cut(s) | 803 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2242, 2274, 2259, 2291 |
| BpmI | CTGGAG | 6 cut(s) | 696, 1413, 1518, 1601, 2252, 2320 |
| Bpu10I | CCTNAGC | 3 cut(s) | 546, 1443, 1713 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1965 |
| Bpu14I | TTCGAA | 1 cut(s) | 1819 |
| BpuEI | CTTGAG | 5 cut(s) | 1005, 1212, 1609, 1892, 1923 |
| BpuMI | CCSGG | 5 cut(s) | 466, 726, 973, 1867, 2283 |
| BsaBI | GATNNNNATC | 2 cut(s) | 846, 1247 |
| BsaHI | GRCGYC | 1 cut(s) | 420 |
| BsaI | GGTCTC | 2 cut(s) | 2095, 2262 |
| BsaJI | CCNNGG | 6 cut(s) | 470, 513, 911, 972, 2198, 2229 |
| BsaWI | WCCGGW | 3 cut(s) | 42, 2101, 2264 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1341, 1371, 1411, 1441 |
| Bse118I | RCCGGY | 4 cut(s) | 91, 475, 1334, 2115 |
| Bse1I | ACTGG | 7 cut(s) | 781, 948, 1094, 1340, 1464, 2073, 2337 |
| Bse21I | CCTNAGG | 1 cut(s) | 1161 |
| Bse8I | GATNNNNATC | 2 cut(s) | 846, 1247 |
| BseAI | TCCGGA | 3 cut(s) | 42, 2101, 2264 |
| BseBI | CCWGG | 9 cut(s) | 255, 424, 514, 1431, 1497, 1705, 1832, 2231, 2298 |
| BseDI | CCNNGG | 6 cut(s) | 470, 513, 911, 972, 2198, 2229 |
| BseJI | GATNNNNATC | 2 cut(s) | 846, 1247 |
| BseMII | CTCAG | 8 cut(s) | 537, 675, 1152, 1529, 1611, 1727, 1956, 2080 |
| BseNI | ACTGG | 7 cut(s) | 781, 948, 1094, 1340, 1464, 2073, 2337 |
| BseRI | GAGGAG | 2 cut(s) | 699, 2386 |
| BseSI | GKGCMC | 1 cut(s) | 459 |
| BsgI | GTGCAG | 4 cut(s) | 678, 1118, 1221, 1238 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1173 |
| BshNI | GGYRCC | 2 cut(s) | 400, 2407 |
| BsiEI | CGRYCG | 1 cut(s) | 1173 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1579 |
| BslFI | GGGAC | 2 cut(s) | 1015, 1805 |
| BsmAI | GTCTC | 5 cut(s) | 8, 1929, 2095, 2262, 2467 |
| BsmFI | GGGAC | 2 cut(s) | 1015, 1805 |
| BsmI | GAATGC | 2 cut(s) | 164, 1366 |
| Bso31I | GGTCTC | 2 cut(s) | 2095, 2262 |
| Bsp119I | TTCGAA | 1 cut(s) | 1819 |
| Bsp120I | GGGCCC | 1 cut(s) | 455 |
| Bsp1286I | GDGCHC | 4 cut(s) | 459, 1527, 1544, 1579 |
| Bsp13I | TCCGGA | 3 cut(s) | 42, 2101, 2264 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1965 |
| Bsp19I | CCATGG | 2 cut(s) | 470, 911 |
| Bsp68I | TCGCGA | 1 cut(s) | 1067 |
| BspCNI | CTCAG | 8 cut(s) | 538, 676, 1153, 1530, 1612, 1726, 1957, 2079 |
| BspEI | TCCGGA | 3 cut(s) | 42, 2101, 2264 |
| BspHI | TCATGA | 1 cut(s) | 1402 |
| BspMI | ACCTGC | 1 cut(s) | 1090 |
| BspQI | GCTCTTC | 1 cut(s) | 988 |
| BspT104I | TTCGAA | 1 cut(s) | 1819 |
| BspT107I | GGYRCC | 2 cut(s) | 400, 2407 |
| BspTNI | GGTCTC | 2 cut(s) | 2095, 2262 |
| BsrFI | RCCGGY | 4 cut(s) | 91, 475, 1334, 2115 |
| BsrI | ACTGG | 7 cut(s) | 781, 948, 1094, 1340, 1464, 2073, 2337 |
| BssAI | RCCGGY | 4 cut(s) | 91, 475, 1334, 2115 |
| BssECI | CCNNGG | 6 cut(s) | 470, 513, 911, 972, 2198, 2229 |
| BssNI | GRCGYC | 1 cut(s) | 420 |
| BssSI | CACGAG | 1 cut(s) | 1256 |
| BssT1I | CCWWGG | 2 cut(s) | 470, 911 |
| Bst2BI | CACGAG | 1 cut(s) | 1256 |
| Bst2UI | CCWGG | 9 cut(s) | 255, 424, 514, 1431, 1497, 1705, 1832, 2231, 2298 |
| Bst4CI | ACNGT | 6 cut(s) | 272, 523, 802, 859, 1858, 2513 |
| Bst6I | CTCTTC | 6 cut(s) | 546, 567, 988, 2335, 2381, 2389 |
| BstACI | GRCGYC | 1 cut(s) | 420 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 761 |
| BstBI | TTCGAA | 1 cut(s) | 1819 |
| BstDSI | CCRYGG | 3 cut(s) | 470, 911, 2198 |
| BstH2I | RGCGCY | 1 cut(s) | 1326 |
| BstHHI | GCGC | 8 cut(s) | 302, 496, 755, 885, 1325, 1565, 1699, 2258 |
| BstMAI | GTCTC | 5 cut(s) | 8, 1929, 2095, 2262, 2467 |
| BstMCI | CGRYCG | 1 cut(s) | 1173 |
| BstNI | CCWGG | 9 cut(s) | 255, 424, 514, 1431, 1497, 1705, 1832, 2231, 2298 |
| BstNSI | RCATGY | 1 cut(s) | 2506 |
| BstSFI | CTRYAG | 3 cut(s) | 268, 519, 1854 |
| BstSLI | GKGCMC | 1 cut(s) | 459 |
| BstV2I | GAAGAC | 1 cut(s) | 803 |
| BstX2I | RGATCY | 5 cut(s) | 39, 2177, 2376, 2417, 2437 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1579 |
| BstYI | RGATCY | 5 cut(s) | 39, 2177, 2376, 2417, 2437 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1161 |
| BtgI | CCRYGG | 3 cut(s) | 470, 911, 2198 |
| BtgZI | GCGATG | 3 cut(s) | 84, 1048, 1288 |
| BtsI | GCAGTG | 1 cut(s) | 1436 |
| BtsIMutI | CAGTG | 8 cut(s) | 277, 766, 1101, 1238, 1436, 1617, 1863, 2080 |
| BtuMI | TCGCGA | 1 cut(s) | 1067 |
| BveI | ACCTGC | 1 cut(s) | 1090 |
| CaiI | CAGNNNCTG | 1 cut(s) | 992 |
| CciI | TCATGA | 1 cut(s) | 1402 |
| CfoI | GCGC | 8 cut(s) | 302, 496, 755, 885, 1325, 1565, 1699, 2258 |
| Cfr10I | RCCGGY | 4 cut(s) | 91, 475, 1334, 2115 |
| CseI | GACGC | 3 cut(s) | 428, 1160, 1757 |
| CviAII | CATG | 8 cut(s) | 471, 912, 1393, 1403, 1412, 1877, 2055, 2503 |
| DraI | TTTAAA | 1 cut(s) | 2452 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 948 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 948 |
| EaeI | YGGCCR | 5 cut(s) | 93, 473, 621, 778, 2541 |
| Eam1104I | CTCTTC | 6 cut(s) | 546, 567, 988, 2335, 2381, 2389 |
| EarI | CTCTTC | 6 cut(s) | 546, 567, 988, 2335, 2381, 2389 |
| EciI | GGCGGA | 2 cut(s) | 53, 2174 |
| Ecl136II | GAGCTC | 1 cut(s) | 1577 |
| Eco130I | CCWWGG | 2 cut(s) | 470, 911 |
| Eco147I | AGGCCT | 1 cut(s) | 1718 |
| Eco24I | GRGCYC | 4 cut(s) | 459, 1527, 1544, 1579 |
| Eco31I | GGTCTC | 2 cut(s) | 2095, 2262 |
| Eco32I | GATATC | 3 cut(s) | 76, 205, 319 |
| Eco47I | GGWCC | 5 cut(s) | 895, 1408, 1433, 2070, 2202 |
| Eco53kI | GAGCTC | 1 cut(s) | 1577 |
| Eco57I | CTGAAG | 4 cut(s) | 354, 613, 837, 969 |
| Eco81I | CCTNAGG | 1 cut(s) | 1161 |
| EcoICRI | GAGCTC | 1 cut(s) | 1577 |
| EcoO109I | RGGNCCY | 2 cut(s) | 456, 1729 |
| EcoRII | CCWGG | 9 cut(s) | 253, 422, 512, 1429, 1495, 1703, 1830, 2229, 2296 |
| EcoRV | GATATC | 3 cut(s) | 76, 205, 319 |
| EcoT14I | CCWWGG | 2 cut(s) | 470, 911 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 4 cut(s) | 459, 1527, 1544, 1579 |
| ErhI | CCWWGG | 2 cut(s) | 470, 911 |
| FaeI | CATG | 8 cut(s) | 474, 915, 1396, 1406, 1415, 1880, 2058, 2506 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1456, 1488 |
| FaqI | GGGAC | 2 cut(s) | 1015, 1805 |
| FatI | CATG | 8 cut(s) | 470, 911, 1392, 1402, 1411, 1876, 2054, 2502 |
| FauI | CCCGC | 4 cut(s) | 87, 517, 594, 1339 |
| FbaI | TGATCA | 1 cut(s) | 274 |
| FriOI | GRGCYC | 4 cut(s) | 459, 1527, 1544, 1579 |
| FspBI | CTAG | 4 cut(s) | 18, 1187, 1455, 1892 |
| FspI | TGCGCA | 1 cut(s) | 1698 |
| GlaI | GCGC | 8 cut(s) | 301, 495, 754, 884, 1324, 1564, 1698, 2257 |
| GsuI | CTGGAG | 6 cut(s) | 696, 1413, 1518, 1601, 2252, 2320 |
| HaeII | RGCGCY | 1 cut(s) | 1326 |
| HgaI | GACGC | 3 cut(s) | 428, 1160, 1757 |
| HhaI | GCGC | 8 cut(s) | 302, 496, 755, 885, 1325, 1565, 1699, 2258 |
| Hin1I | GRCGYC | 1 cut(s) | 420 |
| Hin1II | CATG | 8 cut(s) | 474, 915, 1396, 1406, 1415, 1880, 2058, 2506 |
| Hin6I | GCGC | 8 cut(s) | 300, 494, 753, 883, 1323, 1563, 1697, 2256 |
| HinP1I | GCGC | 8 cut(s) | 300, 494, 753, 883, 1323, 1563, 1697, 2256 |
| HindIII | AAGCTT | 1 cut(s) | 1941 |
| HinfI | GANTC | 7 cut(s) | 450, 595, 827, 1034, 1220, 1810, 2251 |
| HphI | GGTGA | 6 cut(s) | 814, 1007, 1369, 1624, 2286, 2395 |
| Hpy166II | GTNNAC | 3 cut(s) | 1436, 1607, 1632 |
| Hpy8I | GTNNAC | 3 cut(s) | 1436, 1607, 1632 |
| Hpy99I | CGWCG | 3 cut(s) | 422, 954, 1605 |
| HpyCH4III | ACNGT | 6 cut(s) | 272, 523, 802, 859, 1858, 2513 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 695, 1078, 1099, 1238, 1255, 2502 |
| Hsp92I | GRCGYC | 1 cut(s) | 420 |
| Hsp92II | CATG | 8 cut(s) | 474, 915, 1396, 1406, 1415, 1880, 2058, 2506 |
| HspAI | GCGC | 8 cut(s) | 300, 494, 753, 883, 1323, 1563, 1697, 2256 |
| Kpn2I | TCCGGA | 3 cut(s) | 42, 2101, 2264 |
| KpnI | GGTACC | 1 cut(s) | 2411 |
| KroI | GCCGGC | 2 cut(s) | 475, 1334 |
| KroNI | GCCGGC | 2 cut(s) | 477, 1336 |
| Ksp22I | TGATCA | 1 cut(s) | 274 |
| LguI | GCTCTTC | 1 cut(s) | 988 |
| LmnI | GCTCC | 6 cut(s) | 811, 1396, 1432, 1530, 2152, 2267 |
| LweI | GCATC | 6 cut(s) | 13, 180, 679, 1071, 1574, 1972 |
| MaeI | CTAG | 4 cut(s) | 18, 1187, 1455, 1892 |
| MaeIII | GTNAC | 2 cut(s) | 1858, 2507 |
| MfeI | CAATTG | 3 cut(s) | 395, 586, 1847 |
| MflI | RGATCY | 5 cut(s) | 39, 2177, 2376, 2417, 2437 |
| MhlI | GDGCHC | 4 cut(s) | 459, 1527, 1544, 1579 |
| MlsI | TGGCCA | 1 cut(s) | 780 |
| MluCI | AATT | 8 cut(s) | 380, 395, 586, 1079, 1124, 1847, 1993, 2497 |
| MluNI | TGGCCA | 1 cut(s) | 780 |
| MlyI | GAGTC | 1 cut(s) | 2260 |
| MmeI | TCCRAC | 4 cut(s) | 251, 387, 1552, 2229 |
| Mox20I | TGGCCA | 1 cut(s) | 780 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroI | TCCGGA | 3 cut(s) | 42, 2101, 2264 |
| MroNI | GCCGGC | 2 cut(s) | 475, 1334 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1628 |
| MscI | TGGCCA | 1 cut(s) | 780 |
| MseI | TTAA | 2 cut(s) | 1674, 2451 |
| MslI | CAYNNNNRTG | 1 cut(s) | 665 |
| Msp20I | TGGCCA | 1 cut(s) | 780 |
| MspA1I | CMGCKG | 4 cut(s) | 601, 866, 2355, 2405 |
| MunI | CAATTG | 3 cut(s) | 395, 586, 1847 |
| Mva1269I | GAATGC | 2 cut(s) | 164, 1366 |
| MvaI | CCWGG | 9 cut(s) | 255, 424, 514, 1431, 1497, 1705, 1832, 2231, 2298 |
| NaeI | GCCGGC | 2 cut(s) | 477, 1336 |
| NciI | CCSGG | 5 cut(s) | 466, 726, 973, 1867, 2283 |
| NcoI | CCATGG | 2 cut(s) | 470, 911 |
| NgoMIV | GCCGGC | 2 cut(s) | 475, 1334 |
| NlaIII | CATG | 8 cut(s) | 474, 915, 1396, 1406, 1415, 1880, 2058, 2506 |
| NmuCI | GTSAC | 1 cut(s) | 1858 |
| NruI | TCGCGA | 1 cut(s) | 1067 |
| NsbI | TGCGCA | 1 cut(s) | 1698 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 2506 |
| NspV | TTCGAA | 1 cut(s) | 1819 |
| PagI | TCATGA | 1 cut(s) | 1402 |
| PceI | AGGCCT | 1 cut(s) | 1718 |
| PciSI | GCTCTTC | 1 cut(s) | 988 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 946, 1755 |
| PctI | GAATGC | 2 cut(s) | 164, 1366 |
| PdiI | GCCGGC | 2 cut(s) | 477, 1336 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1628 |
| PfeI | GAWTC | 6 cut(s) | 450, 595, 827, 1034, 1220, 1810 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 106, 743, 776, 2171 |
| PfoI | TCCNGGA | 3 cut(s) | 1495, 1830, 2281 |
| Ple19I | CGATCG | 1 cut(s) | 1173 |
| PleI | GAGTC | 1 cut(s) | 2259 |
| PpsI | GAGTC | 1 cut(s) | 2259 |
| PshBI | ATTAAT | 1 cut(s) | 1674 |
| PsiI | TTATAA | 1 cut(s) | 2496 |
| Psp124BI | GAGCTC | 1 cut(s) | 1579 |
| Psp6I | CCWGG | 9 cut(s) | 253, 422, 512, 1429, 1495, 1703, 1830, 2229, 2296 |
| PspGI | CCWGG | 9 cut(s) | 253, 422, 512, 1429, 1495, 1703, 1830, 2229, 2296 |
| PspOMI | GGGCCC | 1 cut(s) | 455 |
| PstNI | CAGNNNCTG | 1 cut(s) | 992 |
| PsuI | RGATCY | 5 cut(s) | 39, 2177, 2376, 2417, 2437 |
| PvuI | CGATCG | 1 cut(s) | 1173 |
| PvuII | CAGCTG | 1 cut(s) | 2355 |
| RruI | TCGCGA | 1 cut(s) | 1067 |
| RseI | CAYNNNNRTG | 1 cut(s) | 665 |
| SacI | GAGCTC | 1 cut(s) | 1579 |
| SapI | GCTCTTC | 1 cut(s) | 988 |
| SaqAI | TTAA | 2 cut(s) | 1674, 2451 |
| ScaI | AGTACT | 3 cut(s) | 1317, 1586, 2029 |
| SchI | GAGTC | 1 cut(s) | 2260 |
| SduI | GDGCHC | 4 cut(s) | 459, 1527, 1544, 1579 |
| SfaNI | GCATC | 6 cut(s) | 13, 180, 679, 1071, 1574, 1972 |
| SfcI | CTRYAG | 3 cut(s) | 268, 519, 1854 |
| SfuI | TTCGAA | 1 cut(s) | 1819 |
| SinI | GGWCC | 5 cut(s) | 895, 1408, 1433, 2070, 2202 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 665 |
| SmlI | CTYRAG | 5 cut(s) | 1020, 1227, 1588, 1871, 1938 |
| SmoI | CTYRAG | 5 cut(s) | 1020, 1227, 1588, 1871, 1938 |
| Sse9I | AATT | 8 cut(s) | 380, 395, 586, 1079, 1124, 1847, 1993, 2497 |
| SseBI | AGGCCT | 1 cut(s) | 1718 |
| SspMI | CTAG | 4 cut(s) | 18, 1187, 1455, 1892 |
| SstI | GAGCTC | 1 cut(s) | 1579 |
| StuI | AGGCCT | 1 cut(s) | 1718 |
| StyI | CCWWGG | 2 cut(s) | 470, 911 |
| TaaI | ACNGT | 6 cut(s) | 272, 523, 802, 859, 1858, 2513 |
| TaqI | TCGA | 3 cut(s) | 663, 940, 1819 |
| TasI | AATT | 8 cut(s) | 380, 395, 586, 1079, 1124, 1847, 1993, 2497 |
| TatI | WGTACW | 5 cut(s) | 1315, 1584, 2027, 2339, 2530 |
| TfiI | GAWTC | 6 cut(s) | 450, 595, 827, 1034, 1220, 1810 |
| Tru1I | TTAA | 2 cut(s) | 1674, 2451 |
| Tru9I | TTAA | 2 cut(s) | 1674, 2451 |
| TscAI | CASTG | 8 cut(s) | 277, 766, 1101, 1245, 1443, 1624, 1863, 2080 |
| TseFI | GTSAC | 1 cut(s) | 1858 |
| Tsp45I | GTSAC | 1 cut(s) | 1858 |
| TspDTI | ATGAA | 2 cut(s) | 939, 1233 |
| TspGWI | ACGGA | 6 cut(s) | 571, 1589, 1684, 2170, 2187, 2447 |
| TspRI | CASTG | 8 cut(s) | 277, 766, 1101, 1245, 1443, 1624, 1863, 2080 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 106, 743, 776, 2171 |
| VpaK11BI | GGWCC | 5 cut(s) | 895, 1408, 1433, 2070, 2202 |
| VspI | ATTAAT | 1 cut(s) | 1674 |
| XbaI | TCTAGA | 1 cut(s) | 1454 |
| XceI | RCATGY | 1 cut(s) | 2506 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 103 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1628 |
| XspI | CTAG | 4 cut(s) | 18, 1187, 1455, 1892 |
| ZrmI | AGTACT | 3 cut(s) | 1317, 1586, 2029 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |