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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 703 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 766 |
| AccII | CGCG | 2 cut(s) | 89, 738 |
| AciI | CCGC | 8 cut(s) | 87, 89, 181, 358, 399, 512, 576, 736 |
| AclWI | GGATC | 3 cut(s) | 23, 89, 798 |
| AcuI | CTGAAG | 1 cut(s) | 357 |
| AdeI | CACNNNGTG | 1 cut(s) | 695 |
| AfaI | GTAC | 3 cut(s) | 270, 294, 612 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 31, 185, 766 |
| AgeI | ACCGGT | 1 cut(s) | 50 |
| AgsI | TTSAA | 1 cut(s) | 617 |
| AjnI | CCWGG | 5 cut(s) | 108, 183, 628, 765, 895 |
| AluBI | AGCT | 4 cut(s) | 138, 266, 351, 821 |
| AluI | AGCT | 4 cut(s) | 138, 266, 351, 821 |
| Alw21I | GWGCWC | 2 cut(s) | 353, 471 |
| AlwI | GGATC | 3 cut(s) | 23, 89, 798 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 766 |
| Ama87I | CYCGRG | 2 cut(s) | 606, 703 |
| AoxI | GGCC | 5 cut(s) | 37, 603, 655, 673, 834 |
| ApaI | GGGCCC | 2 cut(s) | 41, 677 |
| ApeKI | GCWGC | 4 cut(s) | 392, 551, 818, 821 |
| AsiGI | ACCGGT | 1 cut(s) | 50 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 657 |
| AspA2I | CCTAGG | 1 cut(s) | 797 |
| AspLEI | GCGC | 2 cut(s) | 223, 700 |
| AspS9I | GGNCC | 6 cut(s) | 37, 38, 188, 604, 673, 674 |
| AsuC2I | CCSGG | 1 cut(s) | 693 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 263, 499, 742 |
| AvaI | CYCGRG | 2 cut(s) | 606, 703 |
| AvaII | GGWCC | 1 cut(s) | 188 |
| AvrII | CCTAGG | 1 cut(s) | 797 |
| AxyI | CCTNAGG | 1 cut(s) | 144 |
| BaeGI | GKGCMC | 2 cut(s) | 41, 677 |
| BanII | GRGCYC | 4 cut(s) | 41, 353, 677, 760 |
| BauI | CACGAG | 1 cut(s) | 440 |
| Bbv12I | GWGCWC | 2 cut(s) | 353, 471 |
| BbvI | GCAGC | 4 cut(s) | 379, 538, 808, 830 |
| BccI | CCATC | 2 cut(s) | 49, 755 |
| BceAI | ACGGC | 2 cut(s) | 539, 843 |
| BciT130I | CCWGG | 5 cut(s) | 110, 185, 630, 767, 897 |
| BciVI | GTATCC | 1 cut(s) | 874 |
| BclI | TGATCA | 1 cut(s) | 253 |
| BcnI | CCSGG | 1 cut(s) | 693 |
| BfaI | CTAG | 4 cut(s) | 588, 593, 648, 798 |
| BfoI | RGCGCY | 1 cut(s) | 224 |
| BfuI | GTATCC | 1 cut(s) | 874 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 589 |
| BisI | GCNGC | 6 cut(s) | 393, 513, 552, 736, 819, 822 |
| BlnI | CCTAGG | 1 cut(s) | 797 |
| BlpI | GCTNAGC | 1 cut(s) | 579 |
| BlsI | GCNGC | 6 cut(s) | 394, 514, 553, 737, 820, 823 |
| BmcAI | AGTACT | 2 cut(s) | 294, 612 |
| Bme1390I | CCNGG | 6 cut(s) | 110, 185, 630, 693, 767, 897 |
| Bme18I | GGWCC | 1 cut(s) | 188 |
| BmeT110I | CYCGRG | 2 cut(s) | 606, 703 |
| BmgT120I | GGNCC | 6 cut(s) | 37, 38, 188, 604, 673, 674 |
| BmiI | GGNNCC | 8 cut(s) | 39, 114, 189, 516, 540, 675, 676, 757 |
| BmrFI | CCNGG | 6 cut(s) | 110, 185, 630, 693, 767, 897 |
| BmrI | ACTGGG | 2 cut(s) | 284, 754 |
| BmsI | GCATC | 2 cut(s) | 71, 634 |
| BmuI | ACTGGG | 2 cut(s) | 284, 754 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 50, 82 |
| BpmI | CTGGAG | 5 cut(s) | 131, 230, 525, 651, 806 |
| Bpu10I | CCTNAGC | 1 cut(s) | 495 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 579 |
| BpuEI | CTTGAG | 1 cut(s) | 554 |
| BpuMI | CCSGG | 1 cut(s) | 693 |
| BsaJI | CCNNGG | 5 cut(s) | 87, 108, 184, 797, 896 |
| BsaWI | WCCGGW | 3 cut(s) | 50, 271, 752 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 31, 185, 766 |
| Bse118I | RCCGGY | 1 cut(s) | 50 |
| Bse1I | ACTGG | 5 cut(s) | 77, 116, 290, 542, 760 |
| Bse21I | CCTNAGG | 1 cut(s) | 144 |
| BseBI | CCWGG | 5 cut(s) | 110, 185, 630, 767, 897 |
| BseDI | CCNNGG | 5 cut(s) | 87, 108, 184, 797, 896 |
| BseGI | GGATG | 5 cut(s) | 41, 62, 433, 646, 856 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 31, 185, 766 |
| BseMII | CTCAG | 4 cut(s) | 135, 315, 570, 878 |
| BseNI | ACTGG | 5 cut(s) | 77, 116, 290, 542, 760 |
| BseRI | GAGGAG | 4 cut(s) | 401, 494, 497, 615 |
| BseSI | GKGCMC | 2 cut(s) | 41, 677 |
| BseXI | GCAGC | 4 cut(s) | 379, 538, 808, 830 |
| Bsh1236I | CGCG | 2 cut(s) | 89, 738 |
| BshFI | GGCC | 5 cut(s) | 39, 605, 657, 675, 836 |
| BshTI | ACCGGT | 1 cut(s) | 50 |
| BsiHKAI | GWGCWC | 2 cut(s) | 353, 471 |
| BsiHKCI | CYCGRG | 2 cut(s) | 606, 703 |
| BsiSI | CCGG | 7 cut(s) | 51, 272, 407, 506, 693, 753, 860 |
| BslFI | GGGAC | 2 cut(s) | 91, 201 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 31, 185, 766 |
| BsmFI | GGGAC | 2 cut(s) | 91, 201 |
| BsmI | GAATGC | 1 cut(s) | 165 |
| BsnI | GGCC | 5 cut(s) | 39, 605, 657, 675, 836 |
| BsoBI | CYCGRG | 2 cut(s) | 606, 703 |
| Bsp120I | GGGCCC | 2 cut(s) | 37, 673 |
| Bsp1286I | GDGCHC | 5 cut(s) | 41, 353, 471, 677, 760 |
| Bsp143I | GATC | 4 cut(s) | 15, 94, 253, 790 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 579 |
| BspACI | CCGC | 8 cut(s) | 87, 89, 181, 358, 399, 512, 576, 736 |
| BspANI | GGCC | 5 cut(s) | 39, 605, 657, 675, 836 |
| BspCNI | CTCAG | 4 cut(s) | 136, 316, 571, 879 |
| BspFNI | CGCG | 2 cut(s) | 89, 738 |
| BspLI | GGNNCC | 8 cut(s) | 39, 114, 189, 516, 540, 675, 676, 757 |
| BspPI | GGATC | 3 cut(s) | 23, 89, 798 |
| BsrFI | RCCGGY | 1 cut(s) | 50 |
| BsrI | ACTGG | 5 cut(s) | 77, 116, 290, 542, 760 |
| BssAI | RCCGGY | 1 cut(s) | 50 |
| BssECI | CCNNGG | 5 cut(s) | 87, 108, 184, 797, 896 |
| BssMI | GATC | 4 cut(s) | 15, 94, 253, 790 |
| BssSI | CACGAG | 1 cut(s) | 440 |
| BssT1I | CCWWGG | 1 cut(s) | 797 |
| Bst2BI | CACGAG | 1 cut(s) | 440 |
| Bst2UI | CCWGG | 5 cut(s) | 110, 185, 630, 767, 897 |
| Bst6I | CTCTTC | 3 cut(s) | 73, 333, 360 |
| BstC8I | GCNNGC | 6 cut(s) | 140, 358, 397, 447, 740, 744 |
| BstDEI | CTNAG | 5 cut(s) | 144, 324, 495, 579, 887 |
| BstDSI | CCRYGG | 1 cut(s) | 87 |
| BstF5I | GGATG | 5 cut(s) | 41, 62, 433, 646, 856 |
| BstFNI | CGCG | 2 cut(s) | 89, 738 |
| BstH2I | RGCGCY | 1 cut(s) | 224 |
| BstHHI | GCGC | 2 cut(s) | 223, 700 |
| BstKTI | GATC | 4 cut(s) | 18, 97, 256, 793 |
| BstMBI | GATC | 4 cut(s) | 15, 94, 253, 790 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 357, 455, 575, 589, 827, 842 |
| BstNI | CCWGG | 5 cut(s) | 110, 185, 630, 767, 897 |
| BstSCI | CCNGG | 6 cut(s) | 108, 183, 628, 691, 765, 895 |
| BstSLI | GKGCMC | 2 cut(s) | 41, 677 |
| BstUI | CGCG | 2 cut(s) | 89, 738 |
| BstV1I | GCAGC | 4 cut(s) | 379, 538, 808, 830 |
| BstX2I | RGATCY | 1 cut(s) | 790 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 208 |
| BstYI | RGATCY | 1 cut(s) | 790 |
| Bsu36I | CCTNAGG | 1 cut(s) | 144 |
| BsuI | GTATCC | 1 cut(s) | 874 |
| BsuRI | GGCC | 5 cut(s) | 39, 605, 657, 675, 836 |
| BtgI | CCRYGG | 1 cut(s) | 87 |
| BtsCI | GGATG | 5 cut(s) | 41, 62, 433, 646, 856 |
| BtsIMutI | CAGTG | 1 cut(s) | 123 |
| Cac8I | GCNNGC | 6 cut(s) | 140, 358, 397, 447, 740, 744 |
| CaiI | CAGNNNCTG | 1 cut(s) | 766 |
| CfoI | GCGC | 2 cut(s) | 223, 700 |
| Cfr10I | RCCGGY | 1 cut(s) | 50 |
| Cfr13I | GGNCC | 6 cut(s) | 37, 38, 188, 604, 673, 674 |
| Cfr42I | CCGCGG | 1 cut(s) | 90 |
| CseI | GACGC | 2 cut(s) | 297, 587 |
| Csp6I | GTAC | 3 cut(s) | 269, 293, 611 |
| CspAI | ACCGGT | 1 cut(s) | 50 |
| CviQI | GTAC | 3 cut(s) | 269, 293, 611 |
| DdeI | CTNAG | 5 cut(s) | 144, 324, 495, 579, 887 |
| DpnI | GATC | 4 cut(s) | 17, 96, 255, 792 |
| DpnII | GATC | 4 cut(s) | 15, 94, 253, 790 |
| DraIII | CACNNNGTG | 1 cut(s) | 695 |
| Eam1104I | CTCTTC | 3 cut(s) | 73, 333, 360 |
| EarI | CTCTTC | 3 cut(s) | 73, 333, 360 |
| Ecl136II | GAGCTC | 1 cut(s) | 351 |
| Eco130I | CCWWGG | 1 cut(s) | 797 |
| Eco147I | AGGCCT | 1 cut(s) | 657 |
| Eco24I | GRGCYC | 4 cut(s) | 41, 353, 677, 760 |
| Eco32I | GATATC | 1 cut(s) | 772 |
| Eco47I | GGWCC | 1 cut(s) | 188 |
| Eco53kI | GAGCTC | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 1 cut(s) | 357 |
| Eco81I | CCTNAGG | 1 cut(s) | 144 |
| Eco88I | CYCGRG | 2 cut(s) | 606, 703 |
| EcoICRI | GAGCTC | 1 cut(s) | 351 |
| EcoO109I | RGGNCCY | 2 cut(s) | 37, 674 |
| EcoRII | CCWGG | 5 cut(s) | 108, 183, 628, 765, 895 |
| EcoRV | GATATC | 1 cut(s) | 772 |
| EcoT14I | CCWWGG | 1 cut(s) | 797 |
| EcoT38I | GRGCYC | 4 cut(s) | 41, 353, 677, 760 |
| ErhI | CCWWGG | 1 cut(s) | 797 |
| FaiI | YATR | 5 cut(s) | 123, 125, 456, 503, 683 |
| FaqI | GGGAC | 2 cut(s) | 91, 201 |
| FauI | CCCGC | 5 cut(s) | 82, 188, 365, 392, 583 |
| FbaI | TGATCA | 1 cut(s) | 253 |
| Fnu4HI | GCNGC | 6 cut(s) | 393, 513, 552, 736, 819, 822 |
| FokI | GGATG | 5 cut(s) | 28, 49, 440, 653, 843 |
| FriOI | GRGCYC | 4 cut(s) | 41, 353, 677, 760 |
| Fsp4HI | GCNGC | 6 cut(s) | 393, 513, 552, 736, 819, 822 |
| FspBI | CTAG | 4 cut(s) | 588, 593, 648, 798 |
| GlaI | GCGC | 2 cut(s) | 222, 699 |
| GluI | GCNGC | 6 cut(s) | 393, 513, 552, 736, 819, 822 |
| GsuI | CTGGAG | 5 cut(s) | 131, 230, 525, 651, 806 |
| HaeII | RGCGCY | 1 cut(s) | 224 |
| HaeIII | GGCC | 5 cut(s) | 39, 605, 657, 675, 836 |
| HapII | CCGG | 7 cut(s) | 51, 272, 407, 506, 693, 753, 860 |
| HgaI | GACGC | 2 cut(s) | 297, 587 |
| HhaI | GCGC | 2 cut(s) | 223, 700 |
| Hin6I | GCGC | 2 cut(s) | 221, 698 |
| HinP1I | GCGC | 2 cut(s) | 221, 698 |
| HincII | GTYRAC | 1 cut(s) | 665 |
| HindII | GTYRAC | 1 cut(s) | 665 |
| HinfI | GANTC | 3 cut(s) | 173, 227, 403 |
| HpaII | CCGG | 7 cut(s) | 51, 272, 407, 506, 693, 753, 860 |
| HphI | GGTGA | 4 cut(s) | 104, 263, 499, 742 |
| Hpy166II | GTNNAC | 2 cut(s) | 490, 665 |
| Hpy188I | TCNGA | 3 cut(s) | 130, 313, 348 |
| Hpy188III | TCNNGA | 5 cut(s) | 170, 209, 257, 440, 533 |
| Hpy8I | GTNNAC | 2 cut(s) | 490, 665 |
| Hpy99I | CGWCG | 1 cut(s) | 829 |
| HpyAV | CCTTC | 3 cut(s) | 594, 647, 668 |
| HpyCH4V | TGCA | 1 cut(s) | 121 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 357, 455, 575, 589, 827, 842 |
| HpyF3I | CTNAG | 5 cut(s) | 144, 324, 495, 579, 887 |
| HspAI | GCGC | 2 cut(s) | 221, 698 |
| Ksp22I | TGATCA | 1 cut(s) | 253 |
| KspI | CCGCGG | 1 cut(s) | 90 |
| Kzo9I | GATC | 4 cut(s) | 15, 94, 253, 790 |
| LmnI | GCTCC | 4 cut(s) | 112, 520, 544, 755 |
| Lsp1109I | GCAGC | 4 cut(s) | 379, 538, 808, 830 |
| LweI | GCATC | 2 cut(s) | 71, 634 |
| MaeI | CTAG | 4 cut(s) | 588, 593, 648, 798 |
| MaeIII | GTNAC | 2 cut(s) | 437, 619 |
| MalI | GATC | 4 cut(s) | 17, 96, 255, 792 |
| MboI | GATC | 4 cut(s) | 15, 94, 253, 790 |
| MboII | GAAGA | 4 cut(s) | 60, 350, 377, 785 |
| MflI | RGATCY | 1 cut(s) | 790 |
| MhlI | GDGCHC | 5 cut(s) | 41, 353, 471, 677, 760 |
| MlyI | GAGTC | 1 cut(s) | 167 |
| MroXI | GAANNNNTTC | 1 cut(s) | 657 |
| MspA1I | CMGCKG | 3 cut(s) | 89, 578, 821 |
| MspI | CCGG | 7 cut(s) | 51, 272, 407, 506, 693, 753, 860 |
| MspR9I | CCNGG | 6 cut(s) | 110, 185, 630, 693, 767, 897 |
| Mva1269I | GAATGC | 1 cut(s) | 165 |
| MvaI | CCWGG | 5 cut(s) | 110, 185, 630, 767, 897 |
| MvnI | CGCG | 2 cut(s) | 89, 738 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 357, 455, 575, 589, 827, 842 |
| NciI | CCSGG | 1 cut(s) | 693 |
| NdeII | GATC | 4 cut(s) | 15, 94, 253, 790 |
| NlaIV | GGNNCC | 8 cut(s) | 39, 114, 189, 516, 540, 675, 676, 757 |
| NmuCI | GTSAC | 1 cut(s) | 437 |
| PaeR7I | CTCGAG | 1 cut(s) | 703 |
| PceI | AGGCCT | 1 cut(s) | 657 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 552 |
| PctI | GAATGC | 1 cut(s) | 165 |
| PdmI | GAANNNNTTC | 1 cut(s) | 657 |
| PfeI | GAWTC | 2 cut(s) | 227, 403 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 766 |
| PfoI | TCCNGGA | 2 cut(s) | 628, 765 |
| PinAI | ACCGGT | 1 cut(s) | 50 |
| PkrI | GCNGC | 6 cut(s) | 394, 514, 553, 737, 820, 823 |
| PleI | GAGTC | 1 cut(s) | 167 |
| PpsI | GAGTC | 1 cut(s) | 167 |
| Psp124BI | GAGCTC | 1 cut(s) | 353 |
| Psp6I | CCWGG | 5 cut(s) | 108, 183, 628, 765, 895 |
| PspGI | CCWGG | 5 cut(s) | 108, 183, 628, 765, 895 |
| PspN4I | GGNNCC | 8 cut(s) | 39, 114, 189, 516, 540, 675, 676, 757 |
| PspOMI | GGGCCC | 2 cut(s) | 37, 673 |
| PspPI | GGNCC | 6 cut(s) | 37, 38, 188, 604, 673, 674 |
| PspXI | VCTCGAGB | 1 cut(s) | 703 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 252, 284 |
| PstNI | CAGNNNCTG | 1 cut(s) | 766 |
| PsuI | RGATCY | 1 cut(s) | 790 |
| PvuII | CAGCTG | 1 cut(s) | 821 |
| RsaI | GTAC | 3 cut(s) | 270, 294, 612 |
| RsaNI | GTAC | 3 cut(s) | 269, 293, 611 |
| SacI | GAGCTC | 1 cut(s) | 353 |
| SacII | CCGCGG | 1 cut(s) | 90 |
| SatI | GCNGC | 6 cut(s) | 393, 513, 552, 736, 819, 822 |
| Sau3AI | GATC | 4 cut(s) | 15, 94, 253, 790 |
| Sau96I | GGNCC | 6 cut(s) | 37, 38, 188, 604, 673, 674 |
| ScaI | AGTACT | 2 cut(s) | 294, 612 |
| SchI | GAGTC | 1 cut(s) | 167 |
| ScrFI | CCNGG | 6 cut(s) | 110, 185, 630, 693, 767, 897 |
| SduI | GDGCHC | 5 cut(s) | 41, 353, 471, 677, 760 |
| SetI | ASST | 9 cut(s) | 140, 150, 268, 353, 372, 489, 574, 803, 823 |
| SfaNI | GCATC | 2 cut(s) | 71, 634 |
| Sfr274I | CTCGAG | 1 cut(s) | 703 |
| Sfr303I | CCGCGG | 1 cut(s) | 90 |
| SgrBI | CCGCGG | 1 cut(s) | 90 |
| SinI | GGWCC | 1 cut(s) | 188 |
| SlaI | CTCGAG | 1 cut(s) | 703 |
| SmlI | CTYRAG | 2 cut(s) | 533, 703 |
| SmoI | CTYRAG | 2 cut(s) | 533, 703 |
| SseBI | AGGCCT | 1 cut(s) | 657 |
| SsiI | CCGC | 8 cut(s) | 87, 89, 181, 358, 399, 512, 576, 736 |
| SspMI | CTAG | 4 cut(s) | 588, 593, 648, 798 |
| SstI | GAGCTC | 1 cut(s) | 353 |
| StuI | AGGCCT | 1 cut(s) | 657 |
| StyD4I | CCNGG | 6 cut(s) | 108, 183, 628, 691, 765, 895 |
| StyI | CCWWGG | 1 cut(s) | 797 |
| TaqI | TCGA | 4 cut(s) | 18, 471, 704, 774 |
| TatI | WGTACW | 2 cut(s) | 292, 610 |
| TauI | GCSGC | 2 cut(s) | 515, 738 |
| TfiI | GAWTC | 2 cut(s) | 227, 403 |
| TscAI | CASTG | 1 cut(s) | 123 |
| TseFI | GTSAC | 1 cut(s) | 437 |
| TseI | GCWGC | 4 cut(s) | 392, 551, 818, 821 |
| Tsp45I | GTSAC | 1 cut(s) | 437 |
| TspDTI | ATGAA | 2 cut(s) | 17, 444 |
| TspRI | CASTG | 1 cut(s) | 123 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 766 |
| VpaK11BI | GGWCC | 1 cut(s) | 188 |
| XhoI | CTCGAG | 1 cut(s) | 703 |
| XmaJI | CCTAGG | 1 cut(s) | 797 |
| XmnI | GAANNNNTTC | 1 cut(s) | 657 |
| XspI | CTAG | 4 cut(s) | 588, 593, 648, 798 |
| ZrmI | AGTACT | 2 cut(s) | 294, 612 |