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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 795 |
| Acc36I | ACCTGC | 1 cut(s) | 795 |
| AccB1I | GGYRCC | 1 cut(s) | 64 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 904 |
| AccBSI | CCGCTC | 1 cut(s) | 70 |
| AccII | CGCG | 7 cut(s) | 380, 542, 576, 662, 668, 727, 938 |
| AclWI | GGATC | 1 cut(s) | 813 |
| AcuI | CTGAAG | 2 cut(s) | 222, 794 |
| AfaI | GTAC | 1 cut(s) | 372 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 25, 112, 468, 802, 904 |
| AgsI | TTSAA | 3 cut(s) | 56, 135, 326 |
| AjnI | CCWGG | 7 cut(s) | 159, 466, 507, 529, 801, 909, 966 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 966, 998 |
| AluBI | AGCT | 4 cut(s) | 443, 619, 674, 960 |
| AluI | AGCT | 4 cut(s) | 443, 619, 674, 960 |
| Alw21I | GWGCWC | 1 cut(s) | 453 |
| AlwI | GGATC | 1 cut(s) | 813 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 128, 374 |
| Ama87I | CYCGRG | 3 cut(s) | 389, 486, 773 |
| AoxI | GGCC | 6 cut(s) | 125, 393, 493, 813, 906, 1015 |
| ApeKI | GCWGC | 2 cut(s) | 91, 722 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 495 |
| AspLEI | GCGC | 4 cut(s) | 536, 670, 727, 940 |
| AspS9I | GGNCC | 9 cut(s) | 16, 125, 208, 304, 394, 512, 792, 814, 907 |
| AsuC2I | CCSGG | 2 cut(s) | 331, 746 |
| AsuHPI | GGTGA | 1 cut(s) | 752 |
| AsuNHI | GCTAGC | 2 cut(s) | 439, 956 |
| AvaI | CYCGRG | 3 cut(s) | 389, 486, 773 |
| AvaII | GGWCC | 5 cut(s) | 16, 208, 304, 512, 792 |
| AxyI | CCTNAGG | 1 cut(s) | 48 |
| BanI | GGYRCC | 1 cut(s) | 64 |
| BanII | GRGCYC | 1 cut(s) | 645 |
| BauI | CACGAG | 2 cut(s) | 915, 993 |
| Bbv12I | GWGCWC | 1 cut(s) | 453 |
| BbvI | GCAGC | 2 cut(s) | 103, 709 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 254, 288 |
| BciT130I | CCWGG | 7 cut(s) | 161, 468, 509, 531, 803, 911, 968 |
| BcnI | CCSGG | 2 cut(s) | 331, 746 |
| BfaI | CTAG | 4 cut(s) | 440, 675, 837, 957 |
| BfuAI | ACCTGC | 1 cut(s) | 795 |
| BisI | GCNGC | 7 cut(s) | 68, 92, 237, 723, 936, 945, 948 |
| BlpI | GCTNAGC | 1 cut(s) | 408 |
| BlsI | GCNGC | 7 cut(s) | 69, 93, 238, 724, 937, 946, 949 |
| Bme1390I | CCNGG | 9 cut(s) | 161, 331, 468, 509, 531, 746, 803, 911, 968 |
| Bme18I | GGWCC | 5 cut(s) | 16, 208, 304, 512, 792 |
| BmeT110I | CYCGRG | 3 cut(s) | 389, 486, 773 |
| BmgT120I | GGNCC | 9 cut(s) | 16, 125, 208, 304, 394, 512, 792, 814, 907 |
| BmrFI | CCNGG | 9 cut(s) | 161, 331, 468, 509, 531, 746, 803, 911, 968 |
| BmsI | GCATC | 2 cut(s) | 472, 943 |
| BmtI | GCTAGC | 2 cut(s) | 443, 960 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 383, 415 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 408 |
| BpuEI | CTTGAG | 1 cut(s) | 576 |
| BpuMI | CCSGG | 2 cut(s) | 331, 746 |
| BsaJI | CCNNGG | 7 cut(s) | 85, 159, 330, 467, 508, 637, 909 |
| BsaWI | WCCGGW | 1 cut(s) | 139 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 243, 273, 966, 996 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 25, 112, 468, 802, 904 |
| Bse1I | ACTGG | 1 cut(s) | 147 |
| Bse21I | CCTNAGG | 1 cut(s) | 48 |
| Bse3DI | GCAATG | 1 cut(s) | 356 |
| BseBI | CCWGG | 7 cut(s) | 161, 468, 509, 531, 803, 911, 968 |
| BseDI | CCNNGG | 7 cut(s) | 85, 159, 330, 467, 508, 637, 909 |
| BseGI | GGATG | 1 cut(s) | 976 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 25, 112, 468, 802, 904 |
| BseMI | GCAATG | 1 cut(s) | 356 |
| BseMII | CTCAG | 3 cut(s) | 39, 399, 551 |
| BseNI | ACTGG | 1 cut(s) | 147 |
| BseXI | GCAGC | 2 cut(s) | 103, 709 |
| Bsh1236I | CGCG | 7 cut(s) | 380, 542, 576, 662, 668, 727, 938 |
| Bsh1285I | CGRYCG | 1 cut(s) | 666 |
| BshFI | GGCC | 6 cut(s) | 127, 395, 495, 815, 908, 1017 |
| BshNI | GGYRCC | 1 cut(s) | 64 |
| BsiEI | CGRYCG | 1 cut(s) | 666 |
| BsiHKAI | GWGCWC | 1 cut(s) | 453 |
| BsiHKCI | CYCGRG | 3 cut(s) | 389, 486, 773 |
| BsiSI | CCGG | 4 cut(s) | 140, 330, 745, 1003 |
| BslFI | GGGAC | 1 cut(s) | 2 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 25, 112, 468, 802, 904 |
| BsmFI | GGGAC | 1 cut(s) | 2 |
| BsnI | GGCC | 6 cut(s) | 127, 395, 495, 815, 908, 1017 |
| BsoBI | CYCGRG | 3 cut(s) | 389, 486, 773 |
| Bsp1286I | GDGCHC | 2 cut(s) | 453, 645 |
| Bsp143I | GATC | 1 cut(s) | 805 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 408 |
| Bsp19I | CCATGG | 1 cut(s) | 85 |
| Bsp68I | TCGCGA | 2 cut(s) | 576, 662 |
| BspANI | GGCC | 6 cut(s) | 127, 395, 495, 815, 908, 1017 |
| BspCNI | CTCAG | 3 cut(s) | 40, 400, 552 |
| BspFNI | CGCG | 7 cut(s) | 380, 542, 576, 662, 668, 727, 938 |
| BspMI | ACCTGC | 1 cut(s) | 795 |
| BspOI | GCTAGC | 2 cut(s) | 443, 960 |
| BspPI | GGATC | 1 cut(s) | 813 |
| BspT107I | GGYRCC | 1 cut(s) | 64 |
| BsrBI | CCGCTC | 1 cut(s) | 70 |
| BsrDI | GCAATG | 1 cut(s) | 356 |
| BsrI | ACTGG | 1 cut(s) | 147 |
| BssECI | CCNNGG | 7 cut(s) | 85, 159, 330, 467, 508, 637, 909 |
| BssMI | GATC | 1 cut(s) | 805 |
| BssSI | CACGAG | 2 cut(s) | 915, 993 |
| BssT1I | CCWWGG | 2 cut(s) | 85, 637 |
| Bst2BI | CACGAG | 2 cut(s) | 915, 993 |
| Bst2UI | CCWGG | 7 cut(s) | 161, 468, 509, 531, 803, 911, 968 |
| Bst6I | CTCTTC | 1 cut(s) | 198 |
| BstC8I | GCNNGC | 6 cut(s) | 441, 672, 843, 942, 958, 1000 |
| BstDEI | CTNAG | 3 cut(s) | 48, 408, 560 |
| BstDSI | CCRYGG | 1 cut(s) | 85 |
| BstEII | GGTNACC | 1 cut(s) | 740 |
| BstF5I | GGATG | 1 cut(s) | 976 |
| BstFNI | CGCG | 7 cut(s) | 380, 542, 576, 662, 668, 727, 938 |
| BstHHI | GCGC | 4 cut(s) | 536, 670, 727, 940 |
| BstKTI | GATC | 1 cut(s) | 808 |
| BstMBI | GATC | 1 cut(s) | 805 |
| BstMCI | CGRYCG | 1 cut(s) | 666 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 317, 326, 501, 676, 842, 932, 941, 944, 953 |
| BstNI | CCWGG | 7 cut(s) | 161, 468, 509, 531, 803, 911, 968 |
| BstNSI | RCATGY | 1 cut(s) | 935 |
| BstPI | GGTNACC | 1 cut(s) | 740 |
| BstSCI | CCNGG | 9 cut(s) | 159, 329, 466, 507, 529, 744, 801, 909, 966 |
| BstUI | CGCG | 7 cut(s) | 380, 542, 576, 662, 668, 727, 938 |
| BstV1I | GCAGC | 2 cut(s) | 103, 709 |
| BstX2I | RGATCY | 1 cut(s) | 805 |
| BstYI | RGATCY | 1 cut(s) | 805 |
| Bsu36I | CCTNAGG | 1 cut(s) | 48 |
| BsuRI | GGCC | 6 cut(s) | 127, 395, 495, 815, 908, 1017 |
| BtgI | CCRYGG | 1 cut(s) | 85 |
| BtsCI | GGATG | 1 cut(s) | 976 |
| BtsIMutI | CAGTG | 1 cut(s) | 154 |
| BtuMI | TCGCGA | 2 cut(s) | 576, 662 |
| BveI | ACCTGC | 1 cut(s) | 795 |
| Cac8I | GCNNGC | 6 cut(s) | 441, 672, 843, 942, 958, 1000 |
| CaiI | CAGNNNCTG | 2 cut(s) | 128, 374 |
| CfoI | GCGC | 4 cut(s) | 536, 670, 727, 940 |
| Cfr13I | GGNCC | 9 cut(s) | 16, 125, 208, 304, 394, 512, 792, 814, 907 |
| CseI | GACGC | 1 cut(s) | 728 |
| Csp6I | GTAC | 1 cut(s) | 371 |
| CviAII | CATG | 3 cut(s) | 86, 899, 932 |
| CviQI | GTAC | 1 cut(s) | 371 |
| DdeI | CTNAG | 3 cut(s) | 48, 408, 560 |
| DpnI | GATC | 1 cut(s) | 807 |
| DpnII | GATC | 1 cut(s) | 805 |
| DraI | TTTAAA | 1 cut(s) | 886 |
| Eam1104I | CTCTTC | 1 cut(s) | 198 |
| EarI | CTCTTC | 1 cut(s) | 198 |
| Eco130I | CCWWGG | 2 cut(s) | 85, 637 |
| Eco147I | AGGCCT | 2 cut(s) | 495, 1017 |
| Eco24I | GRGCYC | 1 cut(s) | 645 |
| Eco47I | GGWCC | 5 cut(s) | 16, 208, 304, 512, 792 |
| Eco57I | CTGAAG | 2 cut(s) | 222, 794 |
| Eco81I | CCTNAGG | 1 cut(s) | 48 |
| Eco88I | CYCGRG | 3 cut(s) | 389, 486, 773 |
| Eco91I | GGTNACC | 1 cut(s) | 740 |
| EcoO109I | RGGNCCY | 5 cut(s) | 125, 208, 304, 394, 512 |
| EcoO65I | GGTNACC | 1 cut(s) | 740 |
| EcoRII | CCWGG | 7 cut(s) | 159, 466, 507, 529, 801, 909, 966 |
| EcoT14I | CCWWGG | 2 cut(s) | 85, 637 |
| EcoT38I | GRGCYC | 1 cut(s) | 645 |
| ErhI | CCWWGG | 2 cut(s) | 85, 637 |
| FaeI | CATG | 3 cut(s) | 89, 902, 935 |
| FaiI | YATR | 6 cut(s) | 23, 32, 87, 476, 900, 933 |
| FaqI | GGGAC | 1 cut(s) | 2 |
| FatI | CATG | 3 cut(s) | 85, 898, 931 |
| FauI | CCCGC | 1 cut(s) | 547 |
| Fnu4HI | GCNGC | 7 cut(s) | 68, 92, 237, 723, 936, 945, 948 |
| FokI | GGATG | 1 cut(s) | 983 |
| FriOI | GRGCYC | 1 cut(s) | 645 |
| Fsp4HI | GCNGC | 7 cut(s) | 68, 92, 237, 723, 936, 945, 948 |
| FspBI | CTAG | 4 cut(s) | 440, 675, 837, 957 |
| GlaI | GCGC | 4 cut(s) | 535, 669, 726, 939 |
| GluI | GCNGC | 7 cut(s) | 68, 92, 237, 723, 936, 945, 948 |
| HaeIII | GGCC | 6 cut(s) | 127, 395, 495, 815, 908, 1017 |
| HapII | CCGG | 4 cut(s) | 140, 330, 745, 1003 |
| HgaI | GACGC | 1 cut(s) | 728 |
| HhaI | GCGC | 4 cut(s) | 536, 670, 727, 940 |
| Hin1II | CATG | 3 cut(s) | 89, 902, 935 |
| Hin6I | GCGC | 4 cut(s) | 534, 668, 725, 938 |
| HinP1I | GCGC | 4 cut(s) | 534, 668, 725, 938 |
| HincII | GTYRAC | 1 cut(s) | 613 |
| HindII | GTYRAC | 1 cut(s) | 613 |
| HinfI | GANTC | 4 cut(s) | 131, 268, 700, 769 |
| HpaII | CCGG | 4 cut(s) | 140, 330, 745, 1003 |
| HphI | GGTGA | 1 cut(s) | 752 |
| Hpy166II | GTNNAC | 2 cut(s) | 426, 613 |
| Hpy188I | TCNGA | 2 cut(s) | 561, 1022 |
| Hpy8I | GTNNAC | 2 cut(s) | 426, 613 |
| Hpy99I | CGWCG | 2 cut(s) | 407, 504 |
| HpyAV | CCTTC | 5 cut(s) | 119, 242, 485, 506, 826 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 625, 998 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 317, 326, 501, 676, 842, 932, 941, 944, 953 |
| HpyF3I | CTNAG | 3 cut(s) | 48, 408, 560 |
| Hsp92II | CATG | 3 cut(s) | 89, 902, 935 |
| HspAI | GCGC | 4 cut(s) | 534, 668, 725, 938 |
| Kzo9I | GATC | 1 cut(s) | 805 |
| LmnI | GCTCC | 4 cut(s) | 75, 382, 448, 865 |
| Lsp1109I | GCAGC | 2 cut(s) | 103, 709 |
| LweI | GCATC | 2 cut(s) | 472, 943 |
| MaeI | CTAG | 4 cut(s) | 440, 675, 837, 957 |
| MaeIII | GTNAC | 4 cut(s) | 241, 259, 457, 740 |
| MalI | GATC | 1 cut(s) | 807 |
| MbiI | CCGCTC | 1 cut(s) | 70 |
| MboI | GATC | 1 cut(s) | 805 |
| MboII | GAAGA | 7 cut(s) | 68, 176, 215, 353, 563, 623, 800 |
| MfeI | CAATTG | 1 cut(s) | 860 |
| MflI | RGATCY | 1 cut(s) | 805 |
| MhlI | GDGCHC | 2 cut(s) | 453, 645 |
| MluCI | AATT | 5 cut(s) | 135, 180, 525, 764, 860 |
| MlyI | GAGTC | 2 cut(s) | 694, 763 |
| MroXI | GAANNNNTTC | 1 cut(s) | 495 |
| MseI | TTAA | 3 cut(s) | 821, 885, 989 |
| MspA1I | CMGCKG | 1 cut(s) | 950 |
| MspI | CCGG | 4 cut(s) | 140, 330, 745, 1003 |
| MspR9I | CCNGG | 9 cut(s) | 161, 331, 468, 509, 531, 746, 803, 911, 968 |
| MunI | CAATTG | 1 cut(s) | 860 |
| MvaI | CCWGG | 7 cut(s) | 161, 468, 509, 531, 803, 911, 968 |
| MvnI | CGCG | 7 cut(s) | 380, 542, 576, 662, 668, 727, 938 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 317, 326, 501, 676, 842, 932, 941, 944, 953 |
| NciI | CCSGG | 2 cut(s) | 331, 746 |
| NcoI | CCATGG | 1 cut(s) | 85 |
| NdeII | GATC | 1 cut(s) | 805 |
| NheI | GCTAGC | 2 cut(s) | 439, 956 |
| NlaIII | CATG | 3 cut(s) | 89, 902, 935 |
| NmuCI | GTSAC | 4 cut(s) | 241, 259, 457, 740 |
| NruI | TCGCGA | 2 cut(s) | 576, 662 |
| NspI | RCATGY | 1 cut(s) | 935 |
| PaeR7I | CTCGAG | 2 cut(s) | 389, 773 |
| PaqCI | CACCTGC | 1 cut(s) | 795 |
| PceI | AGGCCT | 2 cut(s) | 495, 1017 |
| PdmI | GAANNNNTTC | 1 cut(s) | 495 |
| PfeI | GAWTC | 2 cut(s) | 131, 268 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 904 |
| PfoI | TCCNGGA | 1 cut(s) | 801 |
| PkrI | GCNGC | 7 cut(s) | 69, 93, 238, 724, 937, 946, 949 |
| PleI | GAGTC | 2 cut(s) | 694, 763 |
| PpsI | GAGTC | 2 cut(s) | 694, 763 |
| PpuMI | RGGWCCY | 3 cut(s) | 208, 304, 512 |
| Psp5II | RGGWCCY | 3 cut(s) | 208, 304, 512 |
| Psp6I | CCWGG | 7 cut(s) | 159, 466, 507, 529, 801, 909, 966 |
| PspEI | GGTNACC | 1 cut(s) | 740 |
| PspGI | CCWGG | 7 cut(s) | 159, 466, 507, 529, 801, 909, 966 |
| PspPI | GGNCC | 9 cut(s) | 16, 125, 208, 304, 394, 512, 792, 814, 907 |
| PspPPI | RGGWCCY | 3 cut(s) | 208, 304, 512 |
| PstNI | CAGNNNCTG | 2 cut(s) | 128, 374 |
| PsuI | RGATCY | 1 cut(s) | 805 |
| RruI | TCGCGA | 2 cut(s) | 576, 662 |
| RsaI | GTAC | 1 cut(s) | 372 |
| RsaNI | GTAC | 1 cut(s) | 371 |
| SaqAI | TTAA | 3 cut(s) | 821, 885, 989 |
| SatI | GCNGC | 7 cut(s) | 68, 92, 237, 723, 936, 945, 948 |
| Sau3AI | GATC | 1 cut(s) | 805 |
| Sau96I | GGNCC | 9 cut(s) | 16, 125, 208, 304, 394, 512, 792, 814, 907 |
| SchI | GAGTC | 2 cut(s) | 694, 763 |
| ScrFI | CCNGG | 9 cut(s) | 161, 331, 468, 509, 531, 746, 803, 911, 968 |
| SduI | GDGCHC | 2 cut(s) | 453, 645 |
| SfaNI | GCATC | 2 cut(s) | 472, 943 |
| Sfr274I | CTCGAG | 2 cut(s) | 389, 773 |
| SinI | GGWCC | 5 cut(s) | 16, 208, 304, 512, 792 |
| SlaI | CTCGAG | 2 cut(s) | 389, 773 |
| SmlI | CTYRAG | 3 cut(s) | 389, 591, 773 |
| SmoI | CTYRAG | 3 cut(s) | 389, 591, 773 |
| Sse9I | AATT | 5 cut(s) | 135, 180, 525, 764, 860 |
| SseBI | AGGCCT | 2 cut(s) | 495, 1017 |
| SspMI | CTAG | 4 cut(s) | 440, 675, 837, 957 |
| StuI | AGGCCT | 2 cut(s) | 495, 1017 |
| StyD4I | CCNGG | 9 cut(s) | 159, 329, 466, 507, 529, 744, 801, 909, 966 |
| StyI | CCWWGG | 2 cut(s) | 85, 637 |
| TaqI | TCGA | 2 cut(s) | 390, 774 |
| TaqII | GACCGA | 3 cut(s) | 278, 287, 698 |
| TasI | AATT | 5 cut(s) | 135, 180, 525, 764, 860 |
| TauI | GCSGC | 5 cut(s) | 70, 239, 938, 947, 950 |
| TfiI | GAWTC | 2 cut(s) | 131, 268 |
| Tru1I | TTAA | 3 cut(s) | 821, 885, 989 |
| Tru9I | TTAA | 3 cut(s) | 821, 885, 989 |
| TscAI | CASTG | 1 cut(s) | 154 |
| TseFI | GTSAC | 4 cut(s) | 241, 259, 457, 740 |
| TseI | GCWGC | 2 cut(s) | 91, 722 |
| Tsp45I | GTSAC | 4 cut(s) | 241, 259, 457, 740 |
| TspDTI | ATGAA | 1 cut(s) | 987 |
| TspGWI | ACGGA | 3 cut(s) | 391, 411, 731 |
| TspRI | CASTG | 1 cut(s) | 154 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 904 |
| VpaK11BI | GGWCC | 5 cut(s) | 16, 208, 304, 512, 792 |
| XceI | RCATGY | 1 cut(s) | 935 |
| XhoI | CTCGAG | 2 cut(s) | 389, 773 |
| XmnI | GAANNNNTTC | 1 cut(s) | 495 |
| XspI | CTAG | 4 cut(s) | 440, 675, 837, 957 |