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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 5 cut(s) | 84, 141, 294, 296, 298 |
| AciI | CCGC | 3 cut(s) | 79, 82, 313 |
| AclWI | GGATC | 2 cut(s) | 34, 47 |
| AcyI | GRCGYC | 1 cut(s) | 114 |
| AfaI | GTAC | 2 cut(s) | 152, 225 |
| AgsI | TTSAA | 2 cut(s) | 59, 254 |
| AhlI | ACTAGT | 1 cut(s) | 412 |
| AjnI | CCWGG | 2 cut(s) | 268, 300 |
| AluBI | AGCT | 1 cut(s) | 367 |
| AluI | AGCT | 1 cut(s) | 367 |
| Alw21I | GWGCWC | 1 cut(s) | 369 |
| Alw26I | GTCTC | 1 cut(s) | 8 |
| AlwI | GGATC | 2 cut(s) | 34, 47 |
| AoxI | GGCC | 2 cut(s) | 28, 400 |
| AspLEI | GCGC | 3 cut(s) | 296, 298, 300 |
| AspS9I | GGNCC | 1 cut(s) | 29 |
| BamHI | GGATCC | 1 cut(s) | 39 |
| BanII | GRGCYC | 2 cut(s) | 277, 369 |
| Bbv12I | GWGCWC | 1 cut(s) | 369 |
| BciT130I | CCWGG | 2 cut(s) | 270, 302 |
| BcoDI | GTCTC | 1 cut(s) | 8 |
| BcuI | ACTAGT | 1 cut(s) | 412 |
| BfaI | CTAG | 2 cut(s) | 18, 413 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 399 |
| BisI | GCNGC | 2 cut(s) | 82, 313 |
| BlsI | GCNGC | 2 cut(s) | 83, 314 |
| BmcAI | AGTACT | 1 cut(s) | 225 |
| Bme1390I | CCNGG | 2 cut(s) | 270, 302 |
| BmgT120I | GGNCC | 1 cut(s) | 29 |
| BmiI | GGNNCC | 2 cut(s) | 41, 276 |
| BmrFI | CCNGG | 2 cut(s) | 270, 302 |
| BmsI | GCATC | 3 cut(s) | 13, 353, 424 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 164, 196 |
| BsaHI | GRCGYC | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 1 cut(s) | 269 |
| Bse118I | RCCGGY | 1 cut(s) | 106 |
| Bse1I | ACTGG | 1 cut(s) | 394 |
| Bse3DI | GCAATG | 1 cut(s) | 95 |
| BseBI | CCWGG | 2 cut(s) | 270, 302 |
| BseDI | CCNNGG | 1 cut(s) | 269 |
| BseGI | GGATG | 2 cut(s) | 4, 155 |
| BseMI | GCAATG | 1 cut(s) | 95 |
| BseMII | CTCAG | 2 cut(s) | 162, 370 |
| BseNI | ACTGG | 1 cut(s) | 394 |
| BsePI | GCGCGC | 2 cut(s) | 294, 296 |
| BseRI | GAGGAG | 1 cut(s) | 237 |
| Bsh1236I | CGCG | 5 cut(s) | 84, 141, 294, 296, 298 |
| BshFI | GGCC | 2 cut(s) | 30, 402 |
| BsiHKAI | GWGCWC | 1 cut(s) | 369 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BsmAI | GTCTC | 1 cut(s) | 8 |
| BsnI | GGCC | 2 cut(s) | 30, 402 |
| Bsp1286I | GDGCHC | 2 cut(s) | 277, 369 |
| Bsp143I | GATC | 2 cut(s) | 39, 289 |
| Bsp68I | TCGCGA | 1 cut(s) | 141 |
| BspACI | CCGC | 3 cut(s) | 79, 82, 313 |
| BspANI | GGCC | 2 cut(s) | 30, 402 |
| BspCNI | CTCAG | 2 cut(s) | 163, 369 |
| BspFNI | CGCG | 5 cut(s) | 84, 141, 294, 296, 298 |
| BspLI | GGNNCC | 2 cut(s) | 41, 276 |
| BspPI | GGATC | 2 cut(s) | 34, 47 |
| BsrDI | GCAATG | 1 cut(s) | 95 |
| BsrFI | RCCGGY | 1 cut(s) | 106 |
| BsrI | ACTGG | 1 cut(s) | 394 |
| BssAI | RCCGGY | 1 cut(s) | 106 |
| BssECI | CCNNGG | 1 cut(s) | 269 |
| BssHII | GCGCGC | 2 cut(s) | 294, 296 |
| BssMI | GATC | 2 cut(s) | 39, 289 |
| BssNI | GRCGYC | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 2 cut(s) | 270, 302 |
| Bst4CI | ACNGT | 1 cut(s) | 287 |
| BstACI | GRCGYC | 1 cut(s) | 114 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 205 |
| BstC8I | GCNNGC | 4 cut(s) | 296, 298, 342, 391 |
| BstDEI | CTNAG | 4 cut(s) | 171, 220, 356, 456 |
| BstF5I | GGATG | 2 cut(s) | 4, 155 |
| BstFNI | CGCG | 5 cut(s) | 84, 141, 294, 296, 298 |
| BstHHI | GCGC | 3 cut(s) | 296, 298, 300 |
| BstKTI | GATC | 2 cut(s) | 42, 292 |
| BstMAI | GTCTC | 1 cut(s) | 8 |
| BstMBI | GATC | 2 cut(s) | 39, 289 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 27, 205, 399 |
| BstNI | CCWGG | 2 cut(s) | 270, 302 |
| BstSCI | CCNGG | 2 cut(s) | 268, 300 |
| BstUI | CGCG | 5 cut(s) | 84, 141, 294, 296, 298 |
| BstX2I | RGATCY | 1 cut(s) | 39 |
| BstYI | RGATCY | 1 cut(s) | 39 |
| BsuRI | GGCC | 2 cut(s) | 30, 402 |
| BtsCI | GGATG | 2 cut(s) | 4, 155 |
| BtsIMutI | CAGTG | 2 cut(s) | 134, 292 |
| BtuMI | TCGCGA | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 4 cut(s) | 296, 298, 342, 391 |
| CfoI | GCGC | 3 cut(s) | 296, 298, 300 |
| Cfr10I | RCCGGY | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 1 cut(s) | 29 |
| CseI | GACGC | 1 cut(s) | 122 |
| Csp6I | GTAC | 2 cut(s) | 151, 224 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 232, 267 |
| CviJI | RGCY | 7 cut(s) | 30, 110, 133, 275, 340, 367, 402 |
| CviKI_1 | RGCY | 7 cut(s) | 30, 110, 133, 275, 340, 367, 402 |
| CviQI | GTAC | 2 cut(s) | 151, 224 |
| DdeI | CTNAG | 4 cut(s) | 171, 220, 356, 456 |
| DpnI | GATC | 2 cut(s) | 41, 291 |
| DpnII | GATC | 2 cut(s) | 39, 289 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 367 |
| Eco24I | GRGCYC | 2 cut(s) | 277, 369 |
| Eco53kI | GAGCTC | 1 cut(s) | 367 |
| EcoICRI | GAGCTC | 1 cut(s) | 367 |
| EcoRII | CCWGG | 2 cut(s) | 268, 300 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 2 cut(s) | 277, 369 |
| FaiI | YATR | 3 cut(s) | 184, 363, 432 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 313 |
| FokI | GGATG | 1 cut(s) | 142 |
| FriOI | GRGCYC | 2 cut(s) | 277, 369 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 313 |
| FspBI | CTAG | 2 cut(s) | 18, 413 |
| GlaI | GCGC | 3 cut(s) | 295, 297, 299 |
| GluI | GCNGC | 2 cut(s) | 82, 313 |
| HaeIII | GGCC | 2 cut(s) | 30, 402 |
| HapII | CCGG | 1 cut(s) | 107 |
| HgaI | GACGC | 1 cut(s) | 122 |
| HhaI | GCGC | 3 cut(s) | 296, 298, 300 |
| Hin1I | GRCGYC | 1 cut(s) | 114 |
| Hin6I | GCGC | 3 cut(s) | 294, 296, 298 |
| HinP1I | GCGC | 3 cut(s) | 294, 296, 298 |
| HinfI | GANTC | 2 cut(s) | 55, 237 |
| HpaII | CCGG | 1 cut(s) | 107 |
| Hpy166II | GTNNAC | 1 cut(s) | 153 |
| Hpy188I | TCNGA | 3 cut(s) | 172, 331, 349 |
| Hpy188III | TCNNGA | 3 cut(s) | 13, 140, 251 |
| Hpy8I | GTNNAC | 1 cut(s) | 153 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 1 cut(s) | 128 |
| HpyCH4III | ACNGT | 1 cut(s) | 287 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 199, 216, 344 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 27, 205, 399 |
| HpyF3I | CTNAG | 4 cut(s) | 171, 220, 356, 456 |
| Hsp92I | GRCGYC | 1 cut(s) | 114 |
| HspAI | GCGC | 3 cut(s) | 294, 296, 298 |
| Kzo9I | GATC | 2 cut(s) | 39, 289 |
| LmnI | GCTCC | 2 cut(s) | 280, 379 |
| LpnPI | CCDG | 8 cut(s) | 12, 120, 209, 255, 282, 287, 314, 407 |
| LweI | GCATC | 3 cut(s) | 13, 353, 424 |
| MaeI | CTAG | 2 cut(s) | 18, 413 |
| MalI | GATC | 2 cut(s) | 41, 291 |
| MauBI | CGCGCGCG | 1 cut(s) | 294 |
| MboI | GATC | 2 cut(s) | 39, 289 |
| MboII | GAAGA | 2 cut(s) | 67, 257 |
| MflI | RGATCY | 1 cut(s) | 39 |
| MhlI | GDGCHC | 2 cut(s) | 277, 369 |
| MluCI | AATT | 1 cut(s) | 280 |
| MmeI | TCCRAC | 1 cut(s) | 433 |
| MnlI | CCTC | 5 cut(s) | 136, 141, 258, 365, 437 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MspI | CCGG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 2 cut(s) | 270, 302 |
| MvaI | CCWGG | 2 cut(s) | 270, 302 |
| MvnI | CGCG | 5 cut(s) | 84, 141, 294, 296, 298 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 27, 205, 399 |
| NdeII | GATC | 2 cut(s) | 39, 289 |
| NlaIV | GGNNCC | 2 cut(s) | 41, 276 |
| NruI | TCGCGA | 1 cut(s) | 141 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PauI | GCGCGC | 2 cut(s) | 294, 296 |
| PfeI | GAWTC | 2 cut(s) | 55, 237 |
| PkrI | GCNGC | 2 cut(s) | 83, 314 |
| Psp124BI | GAGCTC | 1 cut(s) | 369 |
| Psp6I | CCWGG | 2 cut(s) | 268, 300 |
| PspGI | CCWGG | 2 cut(s) | 268, 300 |
| PspN4I | GGNNCC | 2 cut(s) | 41, 276 |
| PspPI | GGNCC | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 39 |
| PteI | GCGCGC | 2 cut(s) | 294, 296 |
| RruI | TCGCGA | 1 cut(s) | 141 |
| RsaI | GTAC | 2 cut(s) | 152, 225 |
| RsaNI | GTAC | 2 cut(s) | 151, 224 |
| SacI | GAGCTC | 1 cut(s) | 369 |
| SatI | GCNGC | 2 cut(s) | 82, 313 |
| Sau3AI | GATC | 2 cut(s) | 39, 289 |
| Sau96I | GGNCC | 1 cut(s) | 29 |
| ScaI | AGTACT | 1 cut(s) | 225 |
| ScrFI | CCNGG | 2 cut(s) | 270, 302 |
| SduI | GDGCHC | 2 cut(s) | 277, 369 |
| SetI | ASST | 3 cut(s) | 152, 357, 369 |
| SfaNI | GCATC | 3 cut(s) | 13, 353, 424 |
| SpeI | ACTAGT | 1 cut(s) | 412 |
| Sse9I | AATT | 1 cut(s) | 280 |
| SsiI | CCGC | 3 cut(s) | 79, 82, 313 |
| SspMI | CTAG | 2 cut(s) | 18, 413 |
| SstI | GAGCTC | 1 cut(s) | 369 |
| StyD4I | CCNGG | 2 cut(s) | 268, 300 |
| TaaI | ACNGT | 1 cut(s) | 287 |
| TaqI | TCGA | 1 cut(s) | 12 |
| TasI | AATT | 1 cut(s) | 280 |
| TatI | WGTACW | 1 cut(s) | 223 |
| TauI | GCSGC | 2 cut(s) | 84, 315 |
| TfiI | GAWTC | 2 cut(s) | 55, 237 |
| TscAI | CASTG | 2 cut(s) | 134, 292 |
| TspDTI | ATGAA | 1 cut(s) | 84 |
| TspRI | CASTG | 2 cut(s) | 134, 292 |
| XspI | CTAG | 2 cut(s) | 18, 413 |
| ZrmI | AGTACT | 1 cut(s) | 225 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |