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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 270 |
| AccB1I | GGYRCC | 1 cut(s) | 81 |
| AccBSI | CCGCTC | 1 cut(s) | 344 |
| AccII | CGCG | 4 cut(s) | 315, 465, 467, 476 |
| AclWI | GGATC | 1 cut(s) | 348 |
| AcoI | YGGCCR | 1 cut(s) | 297 |
| AcyI | GRCGYC | 2 cut(s) | 82, 573 |
| AdeI | CACNNNGTG | 1 cut(s) | 539 |
| AgeI | ACCGGT | 1 cut(s) | 675 |
| AgsI | TTSAA | 1 cut(s) | 485 |
| AluBI | AGCT | 1 cut(s) | 323 |
| AluI | AGCT | 1 cut(s) | 323 |
| Alw21I | GWGCWC | 1 cut(s) | 412 |
| Alw26I | GTCTC | 1 cut(s) | 108 |
| AlwI | GGATC | 1 cut(s) | 348 |
| Ama87I | CYCGRG | 1 cut(s) | 513 |
| AoxI | GGCC | 4 cut(s) | 3, 155, 203, 297 |
| ApaI | GGGCCC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 1 cut(s) | 601 |
| AsiGI | ACCGGT | 1 cut(s) | 675 |
| AsiSI | GCGATCGC | 1 cut(s) | 621 |
| AspLEI | GCGC | 4 cut(s) | 84, 271, 315, 467 |
| AspS9I | GGNCC | 5 cut(s) | 4, 150, 155, 156, 229 |
| AsuC2I | CCSGG | 4 cut(s) | 154, 159, 246, 329 |
| AsuHPI | GGTGA | 2 cut(s) | 260, 525 |
| AsuII | TTCGAA | 1 cut(s) | 235 |
| AvaI | CYCGRG | 1 cut(s) | 513 |
| AvaII | GGWCC | 2 cut(s) | 150, 229 |
| BaeGI | GKGCMC | 1 cut(s) | 159 |
| BanI | GGYRCC | 1 cut(s) | 81 |
| BanII | GRGCYC | 2 cut(s) | 159, 473 |
| BauI | CACGAG | 1 cut(s) | 537 |
| Bbv12I | GWGCWC | 1 cut(s) | 412 |
| BbvI | GCAGC | 1 cut(s) | 588 |
| BccI | CCATC | 2 cut(s) | 251, 308 |
| BceAI | ACGGC | 2 cut(s) | 73, 218 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 389, 423 |
| BciVI | GTATCC | 1 cut(s) | 390 |
| BclI | TGATCA | 2 cut(s) | 21, 28 |
| BcnI | CCSGG | 4 cut(s) | 154, 159, 246, 329 |
| BcoDI | GTCTC | 1 cut(s) | 108 |
| BfaI | CTAG | 1 cut(s) | 192 |
| BfoI | RGCGCY | 1 cut(s) | 85 |
| BfuI | GTATCC | 1 cut(s) | 390 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 604 |
| BisI | GCNGC | 6 cut(s) | 297, 316, 596, 599, 602, 605 |
| BlpI | GCTNAGC | 1 cut(s) | 454 |
| BlsI | GCNGC | 6 cut(s) | 298, 317, 597, 600, 603, 606 |
| Bme1390I | CCNGG | 4 cut(s) | 154, 159, 246, 329 |
| Bme18I | GGWCC | 2 cut(s) | 150, 229 |
| BmeT110I | CYCGRG | 1 cut(s) | 513 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 150, 155, 156, 229 |
| BmiI | GGNNCC | 5 cut(s) | 6, 71, 83, 157, 163 |
| BmrFI | CCNGG | 4 cut(s) | 154, 159, 246, 329 |
| BmsI | GCATC | 1 cut(s) | 103 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 454 |
| Bpu14I | TTCGAA | 1 cut(s) | 235 |
| BpuMI | CCSGG | 4 cut(s) | 154, 159, 246, 329 |
| BsaHI | GRCGYC | 2 cut(s) | 82, 573 |
| BsaJI | CCNNGG | 2 cut(s) | 631, 643 |
| BsaWI | WCCGGW | 1 cut(s) | 675 |
| Bse118I | RCCGGY | 2 cut(s) | 449, 675 |
| BseDI | CCNNGG | 2 cut(s) | 631, 643 |
| BseGI | GGATG | 3 cut(s) | 94, 175, 300 |
| BseSI | GKGCMC | 1 cut(s) | 159 |
| BseXI | GCAGC | 1 cut(s) | 588 |
| Bsh1236I | CGCG | 4 cut(s) | 315, 465, 467, 476 |
| Bsh1285I | CGRYCG | 2 cut(s) | 621, 676 |
| BshFI | GGCC | 4 cut(s) | 5, 157, 205, 299 |
| BshNI | GGYRCC | 1 cut(s) | 81 |
| BshTI | ACCGGT | 1 cut(s) | 675 |
| BsiEI | CGRYCG | 2 cut(s) | 621, 676 |
| BsiHKAI | GWGCWC | 1 cut(s) | 412 |
| BsiHKCI | CYCGRG | 1 cut(s) | 513 |
| BsiSI | CCGG | 8 cut(s) | 153, 159, 246, 329, 357, 450, 489, 676 |
| BsmAI | GTCTC | 1 cut(s) | 108 |
| BsnI | GGCC | 4 cut(s) | 5, 157, 205, 299 |
| BsoBI | CYCGRG | 1 cut(s) | 513 |
| Bsp119I | TTCGAA | 1 cut(s) | 235 |
| Bsp120I | GGGCCC | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 3 cut(s) | 159, 412, 473 |
| Bsp143I | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 454 |
| Bsp19I | CCATGG | 1 cut(s) | 643 |
| BspANI | GGCC | 4 cut(s) | 5, 157, 205, 299 |
| BspFNI | CGCG | 4 cut(s) | 315, 465, 467, 476 |
| BspLI | GGNNCC | 5 cut(s) | 6, 71, 83, 157, 163 |
| BspPI | GGATC | 1 cut(s) | 348 |
| BspQI | GCTCTTC | 1 cut(s) | 334 |
| BspT104I | TTCGAA | 1 cut(s) | 235 |
| BspT107I | GGYRCC | 1 cut(s) | 81 |
| BsrBI | CCGCTC | 1 cut(s) | 344 |
| BsrFI | RCCGGY | 2 cut(s) | 449, 675 |
| BssAI | RCCGGY | 2 cut(s) | 449, 675 |
| BssECI | CCNNGG | 2 cut(s) | 631, 643 |
| BssMI | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| BssNI | GRCGYC | 2 cut(s) | 82, 573 |
| BssSI | CACGAG | 1 cut(s) | 537 |
| BssT1I | CCWWGG | 1 cut(s) | 643 |
| Bst2BI | CACGAG | 1 cut(s) | 537 |
| Bst6I | CTCTTC | 1 cut(s) | 334 |
| BstACI | GRCGYC | 2 cut(s) | 82, 573 |
| BstBI | TTCGAA | 1 cut(s) | 235 |
| BstC8I | GCNNGC | 4 cut(s) | 86, 408, 469, 609 |
| BstDEI | CTNAG | 1 cut(s) | 454 |
| BstDSI | CCRYGG | 1 cut(s) | 643 |
| BstF5I | GGATG | 3 cut(s) | 94, 175, 300 |
| BstFNI | CGCG | 4 cut(s) | 315, 465, 467, 476 |
| BstH2I | RGCGCY | 1 cut(s) | 85 |
| BstHHI | GCGC | 4 cut(s) | 84, 271, 315, 467 |
| BstKTI | GATC | 5 cut(s) | 24, 31, 356, 621, 672 |
| BstMAI | GTCTC | 1 cut(s) | 108 |
| BstMBI | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| BstMCI | CGRYCG | 2 cut(s) | 621, 676 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 154, 268, 464, 473, 494, 601, 604 |
| BstSCI | CCNGG | 4 cut(s) | 152, 157, 244, 327 |
| BstSLI | GKGCMC | 1 cut(s) | 159 |
| BstUI | CGCG | 4 cut(s) | 315, 465, 467, 476 |
| BstV1I | GCAGC | 1 cut(s) | 588 |
| BstX2I | RGATCY | 1 cut(s) | 353 |
| BstYI | RGATCY | 1 cut(s) | 353 |
| BsuI | GTATCC | 1 cut(s) | 390 |
| BsuRI | GGCC | 4 cut(s) | 5, 157, 205, 299 |
| BtgI | CCRYGG | 1 cut(s) | 643 |
| BtsCI | GGATG | 3 cut(s) | 94, 175, 300 |
| Cac8I | GCNNGC | 4 cut(s) | 86, 408, 469, 609 |
| CfoI | GCGC | 4 cut(s) | 84, 271, 315, 467 |
| Cfr10I | RCCGGY | 2 cut(s) | 449, 675 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 150, 155, 156, 229 |
| CpoI | CGGWCCG | 1 cut(s) | 150 |
| CseI | GACGC | 3 cut(s) | 195, 465, 581 |
| CspAI | ACCGGT | 1 cut(s) | 675 |
| CspI | CGGWCCG | 1 cut(s) | 150 |
| CviAII | CATG | 2 cut(s) | 144, 644 |
| DdeI | CTNAG | 1 cut(s) | 454 |
| DinI | GGCGCC | 1 cut(s) | 83 |
| DpnI | GATC | 5 cut(s) | 23, 30, 355, 620, 671 |
| DpnII | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| DraIII | CACNNNGTG | 1 cut(s) | 539 |
| EaeI | YGGCCR | 1 cut(s) | 297 |
| Eam1104I | CTCTTC | 1 cut(s) | 334 |
| EarI | CTCTTC | 1 cut(s) | 334 |
| EciI | GGCGGA | 4 cut(s) | 163, 204, 333, 428 |
| Eco130I | CCWWGG | 1 cut(s) | 643 |
| Eco24I | GRGCYC | 2 cut(s) | 159, 473 |
| Eco47I | GGWCC | 2 cut(s) | 150, 229 |
| Eco88I | CYCGRG | 1 cut(s) | 513 |
| EcoT14I | CCWWGG | 1 cut(s) | 643 |
| EcoT38I | GRGCYC | 2 cut(s) | 159, 473 |
| EgeI | GGCGCC | 1 cut(s) | 83 |
| EheI | GGCGCC | 1 cut(s) | 83 |
| ErhI | CCWWGG | 1 cut(s) | 643 |
| FaeI | CATG | 2 cut(s) | 147, 647 |
| FaiI | YATR | 5 cut(s) | 63, 145, 387, 560, 645 |
| FatI | CATG | 2 cut(s) | 143, 643 |
| FauI | CCCGC | 3 cut(s) | 93, 255, 481 |
| FbaI | TGATCA | 2 cut(s) | 21, 28 |
| Fnu4HI | GCNGC | 6 cut(s) | 297, 316, 596, 599, 602, 605 |
| FokI | GGATG | 3 cut(s) | 81, 162, 287 |
| FriOI | GRGCYC | 2 cut(s) | 159, 473 |
| Fsp4HI | GCNGC | 6 cut(s) | 297, 316, 596, 599, 602, 605 |
| FspAI | RTGCGCAY | 1 cut(s) | 270 |
| FspBI | CTAG | 1 cut(s) | 192 |
| FspI | TGCGCA | 1 cut(s) | 270 |
| GlaI | GCGC | 4 cut(s) | 83, 270, 314, 466 |
| GluI | GCNGC | 6 cut(s) | 297, 316, 596, 599, 602, 605 |
| HaeII | RGCGCY | 1 cut(s) | 85 |
| HaeIII | GGCC | 4 cut(s) | 5, 157, 205, 299 |
| HapII | CCGG | 8 cut(s) | 153, 159, 246, 329, 357, 450, 489, 676 |
| HgaI | GACGC | 3 cut(s) | 195, 465, 581 |
| HhaI | GCGC | 4 cut(s) | 84, 271, 315, 467 |
| Hin1I | GRCGYC | 2 cut(s) | 82, 573 |
| Hin1II | CATG | 2 cut(s) | 147, 647 |
| Hin6I | GCGC | 4 cut(s) | 82, 269, 313, 465 |
| HinP1I | GCGC | 4 cut(s) | 82, 269, 313, 465 |
| HinfI | GANTC | 2 cut(s) | 241, 658 |
| HpaII | CCGG | 8 cut(s) | 153, 159, 246, 329, 357, 450, 489, 676 |
| HphI | GGTGA | 2 cut(s) | 260, 525 |
| Hpy188I | TCNGA | 4 cut(s) | 111, 129, 420, 635 |
| Hpy188III | TCNNGA | 5 cut(s) | 32, 179, 336, 515, 569 |
| Hpy99I | CGWCG | 2 cut(s) | 94, 189 |
| HpyAV | CCTTC | 3 cut(s) | 46, 231, 242 |
| HpyCH4IV | ACGT | 1 cut(s) | 390 |
| HpyCH4V | TGCA | 2 cut(s) | 497, 611 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 154, 268, 464, 473, 494, 601, 604 |
| HpyF3I | CTNAG | 1 cut(s) | 454 |
| HpySE526I | ACGT | 1 cut(s) | 390 |
| Hsp92I | GRCGYC | 2 cut(s) | 82, 573 |
| Hsp92II | CATG | 2 cut(s) | 147, 647 |
| HspAI | GCGC | 4 cut(s) | 82, 269, 313, 465 |
| KasI | GGCGCC | 1 cut(s) | 81 |
| Ksp22I | TGATCA | 2 cut(s) | 21, 28 |
| Kzo9I | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| LguI | GCTCTTC | 1 cut(s) | 334 |
| LmnI | GCTCC | 2 cut(s) | 167, 320 |
| LpnPI | CCDG | 8 cut(s) | 51, 166, 172, 259, 342, 370, 463, 502 |
| Lsp1109I | GCAGC | 1 cut(s) | 588 |
| LweI | GCATC | 1 cut(s) | 103 |
| MaeI | CTAG | 1 cut(s) | 192 |
| MaeII | ACGT | 1 cut(s) | 390 |
| MalI | GATC | 5 cut(s) | 23, 30, 355, 620, 671 |
| MbiI | CCGCTC | 1 cut(s) | 344 |
| MboI | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| MboII | GAAGA | 7 cut(s) | 28, 47, 50, 351, 433, 661, 664 |
| MflI | RGATCY | 1 cut(s) | 353 |
| MhlI | GDGCHC | 3 cut(s) | 159, 412, 473 |
| MluCI | AATT | 2 cut(s) | 401, 492 |
| Mly113I | GGCGCC | 1 cut(s) | 82 |
| MlyI | GAGTC | 1 cut(s) | 235 |
| MmeI | TCCRAC | 1 cut(s) | 346 |
| MnlI | CCTC | 7 cut(s) | 18, 366, 511, 520, 546, 553, 641 |
| MslI | CAYNNNNRTG | 1 cut(s) | 103 |
| MspA1I | CMGCKG | 1 cut(s) | 601 |
| MspI | CCGG | 8 cut(s) | 153, 159, 246, 329, 357, 450, 489, 676 |
| MspR9I | CCNGG | 4 cut(s) | 154, 159, 246, 329 |
| MvnI | CGCG | 4 cut(s) | 315, 465, 467, 476 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 154, 268, 464, 473, 494, 601, 604 |
| NarI | GGCGCC | 1 cut(s) | 82 |
| NciI | CCSGG | 4 cut(s) | 154, 159, 246, 329 |
| NcoI | CCATGG | 1 cut(s) | 643 |
| NdeII | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| NlaIII | CATG | 2 cut(s) | 147, 647 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 71, 83, 157, 163 |
| NsbI | TGCGCA | 1 cut(s) | 270 |
| NspV | TTCGAA | 1 cut(s) | 235 |
| PciSI | GCTCTTC | 1 cut(s) | 334 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 54, 208, 396 |
| PfeI | GAWTC | 1 cut(s) | 658 |
| PinAI | ACCGGT | 1 cut(s) | 675 |
| PkrI | GCNGC | 6 cut(s) | 298, 317, 597, 600, 603, 606 |
| Ple19I | CGATCG | 1 cut(s) | 621 |
| PleI | GAGTC | 1 cut(s) | 235 |
| PluTI | GGCGCC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 235 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 71, 83, 157, 163 |
| PspOMI | GGGCCC | 1 cut(s) | 155 |
| PspPI | GGNCC | 5 cut(s) | 4, 150, 155, 156, 229 |
| PsuI | RGATCY | 1 cut(s) | 353 |
| PvuI | CGATCG | 1 cut(s) | 621 |
| RgaI | GCGATCGC | 1 cut(s) | 621 |
| RseI | CAYNNNNRTG | 1 cut(s) | 103 |
| Rsr2I | CGGWCCG | 1 cut(s) | 150 |
| RsrII | CGGWCCG | 1 cut(s) | 150 |
| SapI | GCTCTTC | 1 cut(s) | 334 |
| SatI | GCNGC | 6 cut(s) | 297, 316, 596, 599, 602, 605 |
| Sau3AI | GATC | 5 cut(s) | 21, 28, 353, 618, 669 |
| Sau96I | GGNCC | 5 cut(s) | 4, 150, 155, 156, 229 |
| SchI | GAGTC | 1 cut(s) | 235 |
| ScrFI | CCNGG | 4 cut(s) | 154, 159, 246, 329 |
| SduI | GDGCHC | 3 cut(s) | 159, 412, 473 |
| SetI | ASST | 4 cut(s) | 57, 325, 393, 538 |
| SfaAI | GCGATCGC | 1 cut(s) | 621 |
| SfaNI | GCATC | 1 cut(s) | 103 |
| SfoI | GGCGCC | 1 cut(s) | 83 |
| SfuI | TTCGAA | 1 cut(s) | 235 |
| SgfI | GCGATCGC | 1 cut(s) | 621 |
| SinI | GGWCC | 2 cut(s) | 150, 229 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 103 |
| Sse9I | AATT | 2 cut(s) | 401, 492 |
| SspDI | GGCGCC | 1 cut(s) | 81 |
| SspMI | CTAG | 1 cut(s) | 192 |
| StyD4I | CCNGG | 4 cut(s) | 152, 157, 244, 327 |
| StyI | CCWWGG | 1 cut(s) | 643 |
| TaiI | ACGT | 1 cut(s) | 393 |
| TaqI | TCGA | 4 cut(s) | 235, 255, 335, 672 |
| TaqII | GACCGA | 1 cut(s) | 217 |
| TasI | AATT | 2 cut(s) | 401, 492 |
| TauI | GCSGC | 5 cut(s) | 299, 318, 598, 601, 607 |
| TfiI | GAWTC | 1 cut(s) | 658 |
| TseI | GCWGC | 1 cut(s) | 601 |
| TspDTI | ATGAA | 5 cut(s) | 164, 440, 519, 569, 671 |
| VpaK11BI | GGWCC | 2 cut(s) | 150, 229 |
| XspI | CTAG | 1 cut(s) | 192 |