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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1059 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 444 |
| Acc36I | ACCTGC | 2 cut(s) | 868, 1059 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 153 |
| AccI | GTMKAC | 1 cut(s) | 945 |
| AccII | CGCG | 9 cut(s) | 19, 152, 289, 563, 656, 755, 927, 991, 1040 |
| AclWI | GGATC | 5 cut(s) | 239, 252, 484, 901, 1076 |
| AcoI | YGGCCR | 6 cut(s) | 144, 201, 704, 846, 906, 922 |
| AcsI | RAATTY | 2 cut(s) | 265, 804 |
| AdeI | CACNNNGTG | 1 cut(s) | 153 |
| AfaI | GTAC | 2 cut(s) | 198, 501 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 113, 153, 175, 396, 408, 589, 1065 |
| AgeI | ACCGGT | 2 cut(s) | 168, 439 |
| AgsI | TTSAA | 3 cut(s) | 264, 534, 878 |
| AluBI | AGCT | 4 cut(s) | 355, 577, 612, 794 |
| AluI | AGCT | 4 cut(s) | 355, 577, 612, 794 |
| Alw21I | GWGCWC | 1 cut(s) | 597 |
| Alw44I | GTGCAC | 1 cut(s) | 593 |
| AlwI | GGATC | 5 cut(s) | 239, 252, 484, 901, 1076 |
| Ama87I | CYCGRG | 3 cut(s) | 124, 232, 715 |
| ApaI | GGGCCC | 2 cut(s) | 239, 1080 |
| ApaLI | GTGCAC | 1 cut(s) | 593 |
| ApeKI | GCWGC | 4 cut(s) | 302, 574, 577, 660 |
| ApoI | RAATTY | 2 cut(s) | 265, 804 |
| AsiGI | ACCGGT | 2 cut(s) | 168, 439 |
| AspA2I | CCTAGG | 1 cut(s) | 949 |
| AspLEI | GCGC | 3 cut(s) | 389, 523, 956 |
| AsuC2I | CCSGG | 2 cut(s) | 55, 941 |
| AsuHPI | GGTGA | 3 cut(s) | 482, 503, 1016 |
| AsuII | TTCGAA | 1 cut(s) | 219 |
| AvaI | CYCGRG | 3 cut(s) | 124, 232, 715 |
| AvaII | GGWCC | 3 cut(s) | 109, 399, 1056 |
| AvrII | CCTAGG | 1 cut(s) | 949 |
| AxyI | CCTNAGG | 1 cut(s) | 458 |
| BaeGI | GKGCMC | 3 cut(s) | 239, 597, 1080 |
| BalI | TGGCCA | 1 cut(s) | 706 |
| BamHI | GGATCC | 1 cut(s) | 244 |
| BanII | GRGCYC | 4 cut(s) | 161, 181, 239, 1080 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 880, 912 |
| Bbv12I | GWGCWC | 1 cut(s) | 597 |
| BbvI | GCAGC | 4 cut(s) | 289, 564, 586, 672 |
| BccI | CCATC | 3 cut(s) | 328, 488, 828 |
| BceAI | ACGGC | 2 cut(s) | 159, 682 |
| BcnI | CCSGG | 2 cut(s) | 55, 941 |
| BfaI | CTAG | 1 cut(s) | 950 |
| BfoI | RGCGCY | 1 cut(s) | 524 |
| BfuAI | ACCTGC | 2 cut(s) | 868, 1059 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 460, 703 |
| BlnI | CCTAGG | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 2 cut(s) | 55, 941 |
| Bme18I | GGWCC | 3 cut(s) | 109, 399, 1056 |
| BmeT110I | CYCGRG | 3 cut(s) | 124, 232, 715 |
| BmiI | GGNNCC | 7 cut(s) | 180, 237, 246, 455, 1046, 1058, 1078 |
| BmrFI | CCNGG | 2 cut(s) | 55, 941 |
| BmrI | ACTGGG | 1 cut(s) | 1054 |
| BmsI | GCATC | 2 cut(s) | 220, 440 |
| BmuI | ACTGGG | 1 cut(s) | 1054 |
| Bpu14I | TTCGAA | 1 cut(s) | 219 |
| BpuEI | CTTGAG | 1 cut(s) | 852 |
| BpuMI | CCSGG | 2 cut(s) | 55, 941 |
| BsaJI | CCNNGG | 5 cut(s) | 112, 395, 618, 949, 999 |
| BsaWI | WCCGGW | 3 cut(s) | 106, 168, 439 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 526, 556 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 113, 153, 175, 396, 408, 589, 1065 |
| Bse118I | RCCGGY | 6 cut(s) | 168, 199, 439, 488, 589, 844 |
| Bse1I | ACTGG | 1 cut(s) | 1060 |
| Bse21I | CCTNAGG | 1 cut(s) | 458 |
| BseDI | CCNNGG | 5 cut(s) | 112, 395, 618, 949, 999 |
| BseGI | GGATG | 3 cut(s) | 211, 610, 839 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 113, 153, 175, 396, 408, 589, 1065 |
| BseNI | ACTGG | 1 cut(s) | 1060 |
| BseSI | GKGCMC | 3 cut(s) | 239, 597, 1080 |
| BseX3I | CGGCCG | 2 cut(s) | 846, 922 |
| BseXI | GCAGC | 4 cut(s) | 289, 564, 586, 672 |
| BsgI | GTGCAG | 1 cut(s) | 69 |
| Bsh1236I | CGCG | 9 cut(s) | 19, 152, 289, 563, 656, 755, 927, 991, 1040 |
| Bsh1285I | CGRYCG | 5 cut(s) | 440, 743, 849, 925, 931 |
| BshTI | ACCGGT | 2 cut(s) | 168, 439 |
| BsiEI | CGRYCG | 5 cut(s) | 440, 743, 849, 925, 931 |
| BsiHKAI | GWGCWC | 1 cut(s) | 597 |
| BsiHKCI | CYCGRG | 3 cut(s) | 124, 232, 715 |
| BsiSI | CCGG | 9 cut(s) | 55, 107, 169, 200, 440, 489, 590, 845, 940 |
| BslFI | GGGAC | 2 cut(s) | 141, 1042 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 113, 153, 175, 396, 408, 589, 1065 |
| BsmFI | GGGAC | 2 cut(s) | 141, 1042 |
| BsoBI | CYCGRG | 3 cut(s) | 124, 232, 715 |
| Bsp119I | TTCGAA | 1 cut(s) | 219 |
| Bsp120I | GGGCCC | 2 cut(s) | 235, 1076 |
| Bsp1286I | GDGCHC | 5 cut(s) | 161, 181, 239, 597, 1080 |
| Bsp143I | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| Bsp68I | TCGCGA | 2 cut(s) | 656, 1040 |
| BspFNI | CGCG | 9 cut(s) | 19, 152, 289, 563, 656, 755, 927, 991, 1040 |
| BspLI | GGNNCC | 7 cut(s) | 180, 237, 246, 455, 1046, 1058, 1078 |
| BspMI | ACCTGC | 2 cut(s) | 868, 1059 |
| BspPI | GGATC | 5 cut(s) | 239, 252, 484, 901, 1076 |
| BspT104I | TTCGAA | 1 cut(s) | 219 |
| BsrFI | RCCGGY | 6 cut(s) | 168, 199, 439, 488, 589, 844 |
| BsrI | ACTGG | 1 cut(s) | 1060 |
| BssAI | RCCGGY | 6 cut(s) | 168, 199, 439, 488, 589, 844 |
| BssECI | CCNNGG | 5 cut(s) | 112, 395, 618, 949, 999 |
| BssMI | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| BssT1I | CCWWGG | 3 cut(s) | 112, 949, 999 |
| Bst6I | CTCTTC | 3 cut(s) | 328, 511, 621 |
| BstBI | TTCGAA | 1 cut(s) | 219 |
| BstC8I | GCNNGC | 4 cut(s) | 353, 357, 658, 1038 |
| BstDEI | CTNAG | 1 cut(s) | 458 |
| BstDSI | CCRYGG | 1 cut(s) | 618 |
| BstF5I | GGATG | 3 cut(s) | 211, 610, 839 |
| BstFNI | CGCG | 9 cut(s) | 19, 152, 289, 563, 656, 755, 927, 991, 1040 |
| BstH2I | RGCGCY | 1 cut(s) | 524 |
| BstHHI | GCGC | 3 cut(s) | 389, 523, 956 |
| BstKTI | GATC | 6 cut(s) | 247, 479, 693, 896, 1009, 1071 |
| BstMBI | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| BstMCI | CGRYCG | 5 cut(s) | 440, 743, 849, 925, 931 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 352, 368, 460, 586, 703, 930, 962 |
| BstSCI | CCNGG | 2 cut(s) | 53, 939 |
| BstSLI | GKGCMC | 3 cut(s) | 239, 597, 1080 |
| BstUI | CGCG | 9 cut(s) | 19, 152, 289, 563, 656, 755, 927, 991, 1040 |
| BstV1I | GCAGC | 4 cut(s) | 289, 564, 586, 672 |
| BstX2I | RGATCY | 3 cut(s) | 244, 893, 1068 |
| BstYI | RGATCY | 3 cut(s) | 244, 893, 1068 |
| BstZI | CGGCCG | 2 cut(s) | 846, 922 |
| Bsu36I | CCTNAGG | 1 cut(s) | 458 |
| BtgI | CCRYGG | 1 cut(s) | 618 |
| BtsCI | GGATG | 3 cut(s) | 211, 610, 839 |
| BtuMI | TCGCGA | 2 cut(s) | 656, 1040 |
| BveI | ACCTGC | 2 cut(s) | 868, 1059 |
| Cac8I | GCNNGC | 4 cut(s) | 353, 357, 658, 1038 |
| CciNI | GCGGCCGC | 1 cut(s) | 922 |
| CfoI | GCGC | 3 cut(s) | 389, 523, 956 |
| Cfr10I | RCCGGY | 6 cut(s) | 168, 199, 439, 488, 589, 844 |
| CpoI | CGGWCCG | 1 cut(s) | 399 |
| CseI | GACGC | 1 cut(s) | 1042 |
| Csp6I | GTAC | 2 cut(s) | 197, 500 |
| CspAI | ACCGGT | 2 cut(s) | 168, 439 |
| CspI | CGGWCCG | 1 cut(s) | 399 |
| CviAII | CATG | 1 cut(s) | 694 |
| CviQI | GTAC | 2 cut(s) | 197, 500 |
| DdeI | CTNAG | 1 cut(s) | 458 |
| DpnI | GATC | 6 cut(s) | 246, 478, 692, 895, 1008, 1070 |
| DpnII | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| DraIII | CACNNNGTG | 1 cut(s) | 153 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 444 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 444 |
| EaeI | YGGCCR | 6 cut(s) | 144, 201, 704, 846, 906, 922 |
| EagI | CGGCCG | 2 cut(s) | 846, 922 |
| Eam1104I | CTCTTC | 3 cut(s) | 328, 511, 621 |
| EarI | CTCTTC | 3 cut(s) | 328, 511, 621 |
| EciI | GGCGGA | 1 cut(s) | 273 |
| EclXI | CGGCCG | 2 cut(s) | 846, 922 |
| Eco130I | CCWWGG | 3 cut(s) | 112, 949, 999 |
| Eco24I | GRGCYC | 4 cut(s) | 161, 181, 239, 1080 |
| Eco47I | GGWCC | 3 cut(s) | 109, 399, 1056 |
| Eco52I | CGGCCG | 2 cut(s) | 846, 922 |
| Eco81I | CCTNAGG | 1 cut(s) | 458 |
| Eco88I | CYCGRG | 3 cut(s) | 124, 232, 715 |
| EcoO109I | RGGNCCY | 2 cut(s) | 236, 453 |
| EcoT14I | CCWWGG | 3 cut(s) | 112, 949, 999 |
| EcoT22I | ATGCAT | 1 cut(s) | 213 |
| EcoT38I | GRGCYC | 4 cut(s) | 161, 181, 239, 1080 |
| ErhI | CCWWGG | 3 cut(s) | 112, 949, 999 |
| FaeI | CATG | 1 cut(s) | 697 |
| FaiI | YATR | 3 cut(s) | 209, 409, 695 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 64, 96, 339, 371 |
| FaqI | GGGAC | 2 cut(s) | 141, 1042 |
| FatI | CATG | 1 cut(s) | 693 |
| FauI | CCCGC | 2 cut(s) | 760, 829 |
| FblI | GTMKAC | 1 cut(s) | 945 |
| FokI | GGATG | 3 cut(s) | 198, 617, 846 |
| FriOI | GRGCYC | 4 cut(s) | 161, 181, 239, 1080 |
| FspBI | CTAG | 1 cut(s) | 950 |
| GlaI | GCGC | 3 cut(s) | 388, 522, 955 |
| HaeII | RGCGCY | 1 cut(s) | 524 |
| HapII | CCGG | 9 cut(s) | 55, 107, 169, 200, 440, 489, 590, 845, 940 |
| HgaI | GACGC | 1 cut(s) | 1042 |
| HhaI | GCGC | 3 cut(s) | 389, 523, 956 |
| Hin1II | CATG | 1 cut(s) | 697 |
| Hin6I | GCGC | 3 cut(s) | 387, 521, 954 |
| HinP1I | GCGC | 3 cut(s) | 387, 521, 954 |
| HincII | GTYRAC | 1 cut(s) | 556 |
| HindII | GTYRAC | 1 cut(s) | 556 |
| HindIII | AAGCTT | 1 cut(s) | 353 |
| HinfI | GANTC | 4 cut(s) | 260, 530, 569, 995 |
| HpaII | CCGG | 9 cut(s) | 55, 107, 169, 200, 440, 489, 590, 845, 940 |
| HphI | GGTGA | 3 cut(s) | 482, 503, 1016 |
| Hpy166II | GTNNAC | 3 cut(s) | 556, 595, 946 |
| Hpy188I | TCNGA | 4 cut(s) | 163, 244, 399, 685 |
| Hpy188III | TCNNGA | 8 cut(s) | 126, 257, 435, 655, 715, 814, 1039, 1066 |
| Hpy8I | GTNNAC | 3 cut(s) | 556, 595, 946 |
| Hpy99I | CGWCG | 2 cut(s) | 294, 450 |
| HpyAV | CCTTC | 7 cut(s) | 34, 60, 99, 192, 249, 467, 911 |
| HpyCH4V | TGCA | 5 cut(s) | 71, 86, 191, 211, 595 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 352, 368, 460, 586, 703, 930, 962 |
| HpyF3I | CTNAG | 1 cut(s) | 458 |
| Hsp92II | CATG | 1 cut(s) | 697 |
| HspAI | GCGC | 3 cut(s) | 387, 521, 954 |
| Kzo9I | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| LmnI | GCTCC | 2 cut(s) | 184, 775 |
| Lsp1109I | GCAGC | 4 cut(s) | 289, 564, 586, 672 |
| LweI | GCATC | 2 cut(s) | 220, 440 |
| MaeI | CTAG | 1 cut(s) | 950 |
| MaeIII | GTNAC | 1 cut(s) | 992 |
| MalI | GATC | 6 cut(s) | 246, 478, 692, 895, 1008, 1070 |
| MboI | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| MboII | GAAGA | 8 cut(s) | 72, 315, 428, 498, 638, 791, 888, 1063 |
| MflI | RGATCY | 3 cut(s) | 244, 893, 1068 |
| MhlI | GDGCHC | 5 cut(s) | 161, 181, 239, 597, 1080 |
| MlsI | TGGCCA | 1 cut(s) | 706 |
| MluCI | AATT | 7 cut(s) | 44, 265, 708, 804, 911, 985, 1028 |
| MluNI | TGGCCA | 1 cut(s) | 706 |
| MlyI | GAGTC | 1 cut(s) | 989 |
| Mox20I | TGGCCA | 1 cut(s) | 706 |
| Mph1103I | ATGCAT | 1 cut(s) | 213 |
| MscI | TGGCCA | 1 cut(s) | 706 |
| MseI | TTAA | 1 cut(s) | 1084 |
| Msp20I | TGGCCA | 1 cut(s) | 706 |
| MspA1I | CMGCKG | 2 cut(s) | 302, 577 |
| MspI | CCGG | 9 cut(s) | 55, 107, 169, 200, 440, 489, 590, 845, 940 |
| MspR9I | CCNGG | 2 cut(s) | 55, 941 |
| MvnI | CGCG | 9 cut(s) | 19, 152, 289, 563, 656, 755, 927, 991, 1040 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 352, 368, 460, 586, 703, 930, 962 |
| NciI | CCSGG | 2 cut(s) | 55, 941 |
| NdeII | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| NlaIII | CATG | 1 cut(s) | 697 |
| NlaIV | GGNNCC | 7 cut(s) | 180, 237, 246, 455, 1046, 1058, 1078 |
| NmeAIII | GCCGAG | 1 cut(s) | 850 |
| NmuCI | GTSAC | 1 cut(s) | 992 |
| NotI | GCGGCCGC | 1 cut(s) | 922 |
| NruI | TCGCGA | 2 cut(s) | 656, 1040 |
| NsiI | ATGCAT | 1 cut(s) | 213 |
| NspV | TTCGAA | 1 cut(s) | 219 |
| PaeR7I | CTCGAG | 1 cut(s) | 715 |
| PaqCI | CACCTGC | 1 cut(s) | 1059 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 149, 442 |
| PfeI | GAWTC | 3 cut(s) | 260, 530, 569 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 153 |
| PfoI | TCCNGGA | 1 cut(s) | 53 |
| PinAI | ACCGGT | 2 cut(s) | 168, 439 |
| PleI | GAGTC | 1 cut(s) | 989 |
| PpsI | GAGTC | 1 cut(s) | 989 |
| PspN4I | GGNNCC | 7 cut(s) | 180, 237, 246, 455, 1046, 1058, 1078 |
| PspOMI | GGGCCC | 2 cut(s) | 235, 1076 |
| PsuI | RGATCY | 3 cut(s) | 244, 893, 1068 |
| PvuII | CAGCTG | 1 cut(s) | 577 |
| RruI | TCGCGA | 2 cut(s) | 656, 1040 |
| RsaI | GTAC | 2 cut(s) | 198, 501 |
| RsaNI | GTAC | 2 cut(s) | 197, 500 |
| Rsr2I | CGGWCCG | 1 cut(s) | 399 |
| RsrII | CGGWCCG | 1 cut(s) | 399 |
| SaqAI | TTAA | 1 cut(s) | 1084 |
| Sau3AI | GATC | 6 cut(s) | 244, 476, 690, 893, 1006, 1068 |
| SchI | GAGTC | 1 cut(s) | 989 |
| ScrFI | CCNGG | 2 cut(s) | 55, 941 |
| SduI | GDGCHC | 5 cut(s) | 161, 181, 239, 597, 1080 |
| SfaNI | GCATC | 2 cut(s) | 220, 440 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 460 |
| Sfr274I | CTCGAG | 1 cut(s) | 715 |
| SfuI | TTCGAA | 1 cut(s) | 219 |
| SgrAI | CRCCGGYG | 1 cut(s) | 488 |
| SinI | GGWCC | 3 cut(s) | 109, 399, 1056 |
| SlaI | CTCGAG | 1 cut(s) | 715 |
| SmlI | CTYRAG | 2 cut(s) | 715, 867 |
| SmoI | CTYRAG | 2 cut(s) | 715, 867 |
| Sse9I | AATT | 7 cut(s) | 44, 265, 708, 804, 911, 985, 1028 |
| SspMI | CTAG | 1 cut(s) | 950 |
| StyD4I | CCNGG | 2 cut(s) | 53, 939 |
| StyI | CCWWGG | 3 cut(s) | 112, 949, 999 |
| TaqI | TCGA | 9 cut(s) | 219, 250, 332, 436, 624, 716, 761, 798, 813 |
| TaqII | GACCGA | 2 cut(s) | 416, 757 |
| TasI | AATT | 7 cut(s) | 44, 265, 708, 804, 911, 985, 1028 |
| TauI | GCSGC | 6 cut(s) | 289, 362, 488, 526, 924, 927 |
| TfiI | GAWTC | 3 cut(s) | 260, 530, 569 |
| Tru1I | TTAA | 1 cut(s) | 1084 |
| Tru9I | TTAA | 1 cut(s) | 1084 |
| TseFI | GTSAC | 1 cut(s) | 992 |
| TseI | GCWGC | 4 cut(s) | 302, 574, 577, 660 |
| Tsp45I | GTSAC | 1 cut(s) | 992 |
| TspDTI | ATGAA | 3 cut(s) | 66, 435, 792 |
| TspGWI | ACGGA | 1 cut(s) | 52 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 153 |
| VneI | GTGCAC | 1 cut(s) | 593 |
| VpaK11BI | GGWCC | 3 cut(s) | 109, 399, 1056 |
| XapI | RAATTY | 2 cut(s) | 265, 804 |
| XhoI | CTCGAG | 1 cut(s) | 715 |
| XmaJI | CCTAGG | 1 cut(s) | 949 |
| XmiI | GTMKAC | 1 cut(s) | 945 |
| XspI | CTAG | 1 cut(s) | 950 |
| Zsp2I | ATGCAT | 1 cut(s) | 213 |