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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 122, 396, 424 |
| AccI | GTMKAC | 1 cut(s) | 153 |
| AccII | CGCG | 4 cut(s) | 120, 166, 402, 509 |
| AciI | CCGC | 9 cut(s) | 118, 120, 271, 383, 400, 402, 433, 507, 770 |
| AclWI | GGATC | 1 cut(s) | 533 |
| AcoI | YGGCCR | 2 cut(s) | 70, 767 |
| AcsI | RAATTY | 1 cut(s) | 220 |
| AfaI | GTAC | 2 cut(s) | 234, 652 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 36, 427, 496, 765 |
| AgeI | ACCGGT | 1 cut(s) | 326 |
| AgsI | TTSAA | 1 cut(s) | 110 |
| AluBI | AGCT | 1 cut(s) | 606 |
| AluI | AGCT | 1 cut(s) | 606 |
| Alw26I | GTCTC | 1 cut(s) | 744 |
| AlwI | GGATC | 1 cut(s) | 533 |
| Ama87I | CYCGRG | 1 cut(s) | 455 |
| AoxI | GGCC | 5 cut(s) | 70, 273, 417, 459, 767 |
| ApoI | RAATTY | 1 cut(s) | 220 |
| AsiGI | ACCGGT | 1 cut(s) | 326 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 590 |
| AspS9I | GGNCC | 3 cut(s) | 256, 273, 418 |
| AsuC2I | CCSGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| AsuHPI | GGTGA | 5 cut(s) | 19, 344, 367, 574, 786 |
| AvaI | CYCGRG | 1 cut(s) | 455 |
| AvaII | GGWCC | 1 cut(s) | 256 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BanI | GGYRCC | 3 cut(s) | 122, 396, 424 |
| BccI | CCATC | 2 cut(s) | 38, 142 |
| BceAI | ACGGC | 3 cut(s) | 279, 294, 463 |
| BclI | TGATCA | 1 cut(s) | 564 |
| BcnI | CCSGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| BcoDI | GTCTC | 1 cut(s) | 744 |
| BfaI | CTAG | 4 cut(s) | 17, 114, 242, 365 |
| BisI | GCNGC | 4 cut(s) | 118, 121, 403, 770 |
| BlsI | GCNGC | 4 cut(s) | 119, 122, 404, 771 |
| Bme1390I | CCNGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| Bme18I | GGWCC | 1 cut(s) | 256 |
| BmeT110I | CYCGRG | 1 cut(s) | 455 |
| BmgT120I | GGNCC | 3 cut(s) | 256, 273, 418 |
| BmiI | GGNNCC | 5 cut(s) | 124, 398, 420, 426, 501 |
| BmrFI | CCNGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| BmsI | GCATC | 5 cut(s) | 15, 200, 347, 348, 541 |
| BpuMI | CCSGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| BsaJI | CCNNGG | 8 cut(s) | 118, 259, 276, 400, 420, 456, 462, 595 |
| BsaWI | WCCGGW | 2 cut(s) | 326, 541 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 36, 427, 496, 765 |
| Bse118I | RCCGGY | 2 cut(s) | 326, 427 |
| Bse1I | ACTGG | 1 cut(s) | 258 |
| Bse3DI | GCAATG | 1 cut(s) | 11 |
| BseDI | CCNNGG | 8 cut(s) | 118, 259, 276, 400, 420, 456, 462, 595 |
| BseGI | GGATG | 5 cut(s) | 338, 363, 516, 556, 656 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 36, 427, 496, 765 |
| BseMI | GCAATG | 1 cut(s) | 11 |
| BseNI | ACTGG | 1 cut(s) | 258 |
| BseRI | GAGGAG | 2 cut(s) | 228, 479 |
| BseX3I | CGGCCG | 1 cut(s) | 767 |
| BsgI | GTGCAG | 1 cut(s) | 83 |
| Bsh1236I | CGCG | 4 cut(s) | 120, 166, 402, 509 |
| Bsh1285I | CGRYCG | 3 cut(s) | 185, 394, 770 |
| BshFI | GGCC | 5 cut(s) | 72, 275, 419, 461, 769 |
| BshNI | GGYRCC | 3 cut(s) | 122, 396, 424 |
| BshTI | ACCGGT | 1 cut(s) | 326 |
| BsiEI | CGRYCG | 3 cut(s) | 185, 394, 770 |
| BsiHKCI | CYCGRG | 1 cut(s) | 455 |
| BsiSI | CCGG | 9 cut(s) | 327, 355, 422, 428, 481, 521, 542, 597, 759 |
| BslFI | GGGAC | 1 cut(s) | 497 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 36, 427, 496, 765 |
| BsmAI | GTCTC | 1 cut(s) | 744 |
| BsmFI | GGGAC | 1 cut(s) | 497 |
| BsmI | GAATGC | 1 cut(s) | 477 |
| BsnI | GGCC | 5 cut(s) | 72, 275, 419, 461, 769 |
| BsoBI | CYCGRG | 1 cut(s) | 455 |
| Bsp143I | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| Bsp68I | TCGCGA | 1 cut(s) | 166 |
| BspACI | CCGC | 9 cut(s) | 118, 120, 271, 383, 400, 402, 433, 507, 770 |
| BspANI | GGCC | 5 cut(s) | 72, 275, 419, 461, 769 |
| BspFNI | CGCG | 4 cut(s) | 120, 166, 402, 509 |
| BspLI | GGNNCC | 5 cut(s) | 124, 398, 420, 426, 501 |
| BspPI | GGATC | 1 cut(s) | 533 |
| BspT107I | GGYRCC | 3 cut(s) | 122, 396, 424 |
| BsrDI | GCAATG | 1 cut(s) | 11 |
| BsrFI | RCCGGY | 2 cut(s) | 326, 427 |
| BsrI | ACTGG | 1 cut(s) | 258 |
| BssAI | RCCGGY | 2 cut(s) | 326, 427 |
| BssECI | CCNNGG | 8 cut(s) | 118, 259, 276, 400, 420, 456, 462, 595 |
| BssMI | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| BssT1I | CCWWGG | 1 cut(s) | 259 |
| Bst4CI | ACNGT | 3 cut(s) | 60, 85, 591 |
| Bst6I | CTCTTC | 2 cut(s) | 640, 726 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 672 |
| BstC8I | GCNNGC | 5 cut(s) | 247, 273, 351, 452, 633 |
| BstDSI | CCRYGG | 3 cut(s) | 118, 276, 400 |
| BstF5I | GGATG | 5 cut(s) | 338, 363, 516, 556, 656 |
| BstFNI | CGCG | 4 cut(s) | 120, 166, 402, 509 |
| BstKTI | GATC | 5 cut(s) | 185, 375, 394, 541, 567 |
| BstMAI | GTCTC | 1 cut(s) | 744 |
| BstMBI | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| BstMCI | CGRYCG | 3 cut(s) | 185, 394, 770 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 612, 672 |
| BstNSI | RCATGY | 1 cut(s) | 642 |
| BstSCI | CCNGG | 5 cut(s) | 353, 420, 480, 519, 595 |
| BstUI | CGCG | 4 cut(s) | 120, 166, 402, 509 |
| BstZI | CGGCCG | 1 cut(s) | 767 |
| BsuRI | GGCC | 5 cut(s) | 72, 275, 419, 461, 769 |
| BtgI | CCRYGG | 3 cut(s) | 118, 276, 400 |
| BtgZI | GCGATG | 1 cut(s) | 177 |
| BtsCI | GGATG | 5 cut(s) | 338, 363, 516, 556, 656 |
| BtsIMutI | CAGTG | 1 cut(s) | 251 |
| BtuMI | TCGCGA | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 5 cut(s) | 247, 273, 351, 452, 633 |
| Cfr10I | RCCGGY | 2 cut(s) | 326, 427 |
| Cfr13I | GGNCC | 3 cut(s) | 256, 273, 418 |
| Cfr42I | CCGCGG | 2 cut(s) | 121, 403 |
| Csp6I | GTAC | 2 cut(s) | 233, 651 |
| CspAI | ACCGGT | 1 cut(s) | 326 |
| CviAII | CATG | 5 cut(s) | 68, 103, 299, 536, 639 |
| CviQI | GTAC | 2 cut(s) | 233, 651 |
| DpnI | GATC | 5 cut(s) | 184, 374, 393, 540, 566 |
| DpnII | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| EaeI | YGGCCR | 2 cut(s) | 70, 767 |
| EagI | CGGCCG | 1 cut(s) | 767 |
| Eam1104I | CTCTTC | 2 cut(s) | 640, 726 |
| EarI | CTCTTC | 2 cut(s) | 640, 726 |
| EciI | GGCGGA | 1 cut(s) | 372 |
| EclXI | CGGCCG | 1 cut(s) | 767 |
| Eco130I | CCWWGG | 1 cut(s) | 259 |
| Eco47I | GGWCC | 1 cut(s) | 256 |
| Eco52I | CGGCCG | 1 cut(s) | 767 |
| Eco88I | CYCGRG | 1 cut(s) | 455 |
| EcoT14I | CCWWGG | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 259 |
| FaeI | CATG | 5 cut(s) | 71, 106, 302, 539, 642 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 637, 669, 655, 687 |
| FaqI | GGGAC | 1 cut(s) | 497 |
| FatI | CATG | 5 cut(s) | 67, 102, 298, 535, 638 |
| FauI | CCCGC | 1 cut(s) | 264 |
| FbaI | TGATCA | 1 cut(s) | 564 |
| FblI | GTMKAC | 1 cut(s) | 153 |
| Fnu4HI | GCNGC | 4 cut(s) | 118, 121, 403, 770 |
| FokI | GGATG | 5 cut(s) | 325, 370, 503, 563, 643 |
| Fsp4HI | GCNGC | 4 cut(s) | 118, 121, 403, 770 |
| FspBI | CTAG | 4 cut(s) | 17, 114, 242, 365 |
| GluI | GCNGC | 4 cut(s) | 118, 121, 403, 770 |
| HaeIII | GGCC | 5 cut(s) | 72, 275, 419, 461, 769 |
| HapII | CCGG | 9 cut(s) | 327, 355, 422, 428, 481, 521, 542, 597, 759 |
| Hin1II | CATG | 5 cut(s) | 71, 106, 302, 539, 642 |
| HincII | GTYRAC | 1 cut(s) | 154 |
| HindII | GTYRAC | 1 cut(s) | 154 |
| HinfI | GANTC | 2 cut(s) | 368, 407 |
| HpaII | CCGG | 9 cut(s) | 327, 355, 422, 428, 481, 521, 542, 597, 759 |
| HphI | GGTGA | 5 cut(s) | 19, 344, 367, 574, 786 |
| Hpy166II | GTNNAC | 1 cut(s) | 154 |
| Hpy188I | TCNGA | 1 cut(s) | 620 |
| Hpy188III | TCNNGA | 5 cut(s) | 165, 389, 548, 568, 692 |
| Hpy8I | GTNNAC | 1 cut(s) | 154 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 3 cut(s) | 207, 305, 487 |
| HpyCH4III | ACNGT | 3 cut(s) | 60, 85, 591 |
| HpyCH4V | TGCA | 4 cut(s) | 100, 218, 349, 631 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 612, 672 |
| Hsp92II | CATG | 5 cut(s) | 71, 106, 302, 539, 642 |
| Ksp22I | TGATCA | 1 cut(s) | 564 |
| KspI | CCGCGG | 2 cut(s) | 121, 403 |
| Kzo9I | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| LmnI | GCTCC | 1 cut(s) | 523 |
| LweI | GCATC | 5 cut(s) | 15, 200, 347, 348, 541 |
| MaeI | CTAG | 4 cut(s) | 17, 114, 242, 365 |
| MalI | GATC | 5 cut(s) | 184, 374, 393, 540, 566 |
| MboI | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| MboII | GAAGA | 2 cut(s) | 657, 743 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 4 cut(s) | 74, 88, 220, 679 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MlyI | GAGTC | 1 cut(s) | 362 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| MroXI | GAANNNNTTC | 1 cut(s) | 590 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MslI | CAYNNNNRTG | 1 cut(s) | 303 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 2 cut(s) | 120, 402 |
| MspI | CCGG | 9 cut(s) | 327, 355, 422, 428, 481, 521, 542, 597, 759 |
| MspR9I | CCNGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| Mva1269I | GAATGC | 1 cut(s) | 477 |
| MvnI | CGCG | 4 cut(s) | 120, 166, 402, 509 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 612, 672 |
| NciI | CCSGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| NdeII | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| NlaIII | CATG | 5 cut(s) | 71, 106, 302, 539, 642 |
| NlaIV | GGNNCC | 5 cut(s) | 124, 398, 420, 426, 501 |
| NmeAIII | GCCGAG | 1 cut(s) | 487 |
| NruI | TCGCGA | 1 cut(s) | 166 |
| NspI | RCATGY | 1 cut(s) | 642 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 453, 715 |
| PctI | GAATGC | 1 cut(s) | 477 |
| PdmI | GAANNNNTTC | 1 cut(s) | 590 |
| PfeI | GAWTC | 1 cut(s) | 407 |
| PflFI | GACNNNGTC | 1 cut(s) | 83 |
| PfoI | TCCNGGA | 2 cut(s) | 480, 519 |
| PinAI | ACCGGT | 1 cut(s) | 326 |
| PkrI | GCNGC | 4 cut(s) | 119, 122, 404, 771 |
| Ple19I | CGATCG | 2 cut(s) | 185, 394 |
| PleI | GAGTC | 1 cut(s) | 362 |
| PpsI | GAGTC | 1 cut(s) | 362 |
| PspN4I | GGNNCC | 5 cut(s) | 124, 398, 420, 426, 501 |
| PspPI | GGNCC | 3 cut(s) | 256, 273, 418 |
| PsyI | GACNNNGTC | 1 cut(s) | 83 |
| PvuI | CGATCG | 2 cut(s) | 185, 394 |
| RruI | TCGCGA | 1 cut(s) | 166 |
| RsaI | GTAC | 2 cut(s) | 234, 652 |
| RsaNI | GTAC | 2 cut(s) | 233, 651 |
| RseI | CAYNNNNRTG | 1 cut(s) | 303 |
| SacII | CCGCGG | 2 cut(s) | 121, 403 |
| SalI | GTCGAC | 1 cut(s) | 152 |
| SatI | GCNGC | 4 cut(s) | 118, 121, 403, 770 |
| Sau3AI | GATC | 5 cut(s) | 182, 372, 391, 538, 564 |
| Sau96I | GGNCC | 3 cut(s) | 256, 273, 418 |
| SchI | GAGTC | 1 cut(s) | 362 |
| ScrFI | CCNGG | 5 cut(s) | 355, 422, 482, 521, 597 |
| SetI | ASST | 6 cut(s) | 46, 238, 380, 608, 652, 699 |
| SfaNI | GCATC | 5 cut(s) | 15, 200, 347, 348, 541 |
| Sfr303I | CCGCGG | 2 cut(s) | 121, 403 |
| SgrBI | CCGCGG | 2 cut(s) | 121, 403 |
| SinI | GGWCC | 1 cut(s) | 256 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 303 |
| Sse9I | AATT | 4 cut(s) | 74, 88, 220, 679 |
| SsiI | CCGC | 9 cut(s) | 118, 120, 271, 383, 400, 402, 433, 507, 770 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 4 cut(s) | 17, 114, 242, 365 |
| StyD4I | CCNGG | 5 cut(s) | 353, 420, 480, 519, 595 |
| StyI | CCWWGG | 1 cut(s) | 259 |
| TaaI | ACNGT | 3 cut(s) | 60, 85, 591 |
| TaqI | TCGA | 6 cut(s) | 48, 146, 153, 371, 390, 709 |
| TasI | AATT | 4 cut(s) | 74, 88, 220, 679 |
| TauI | GCSGC | 4 cut(s) | 120, 123, 405, 772 |
| TfiI | GAWTC | 1 cut(s) | 407 |
| TscAI | CASTG | 1 cut(s) | 258 |
| TspDTI | ATGAA | 5 cut(s) | 56, 69, 213, 645, 677 |
| TspGWI | ACGGA | 1 cut(s) | 598 |
| TspRI | CASTG | 1 cut(s) | 258 |
| Tth111I | GACNNNGTC | 1 cut(s) | 83 |
| VpaK11BI | GGWCC | 1 cut(s) | 256 |
| XapI | RAATTY | 1 cut(s) | 220 |
| XceI | RCATGY | 1 cut(s) | 642 |
| XmiI | GTMKAC | 1 cut(s) | 153 |
| XmnI | GAANNNNTTC | 1 cut(s) | 590 |
| XspI | CTAG | 4 cut(s) | 17, 114, 242, 365 |