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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 125 |
| AccII | CGCG | 7 cut(s) | 99, 240, 450, 452, 454, 791, 868 |
| AclWI | GGATC | 1 cut(s) | 900 |
| AcoI | YGGCCR | 1 cut(s) | 280 |
| AcsI | RAATTY | 2 cut(s) | 216, 392 |
| AcuI | CTGAAG | 1 cut(s) | 876 |
| AcyI | GRCGYC | 2 cut(s) | 126, 591 |
| AfaI | GTAC | 2 cut(s) | 308, 347 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 122, 427, 636, 710, 711 |
| AgeI | ACCGGT | 1 cut(s) | 115 |
| AgsI | TTSAA | 3 cut(s) | 169, 215, 410 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 116 |
| AjnI | CCWGG | 4 cut(s) | 147, 424, 593, 611 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 402, 434 |
| Alw26I | GTCTC | 2 cut(s) | 754, 760 |
| AlwI | GGATC | 1 cut(s) | 900 |
| Ama87I | CYCGRG | 1 cut(s) | 554 |
| AoxI | GGCC | 4 cut(s) | 150, 184, 280, 638 |
| ApoI | RAATTY | 2 cut(s) | 216, 392 |
| AsiGI | ACCGGT | 1 cut(s) | 115 |
| AspLEI | GCGC | 7 cut(s) | 128, 452, 454, 456, 618, 868, 915 |
| AspS9I | GGNCC | 5 cut(s) | 56, 185, 626, 687, 714 |
| AsuHPI | GGTGA | 1 cut(s) | 458 |
| AvaI | CYCGRG | 1 cut(s) | 554 |
| AvaII | GGWCC | 4 cut(s) | 56, 626, 687, 714 |
| BanI | GGYRCC | 1 cut(s) | 125 |
| BanII | GRGCYC | 1 cut(s) | 108 |
| BauI | CACGAG | 1 cut(s) | 881 |
| BccI | CCATC | 3 cut(s) | 279, 704, 803 |
| BceAI | ACGGC | 1 cut(s) | 279 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 273, 307, 824, 858 |
| BciT130I | CCWGG | 4 cut(s) | 149, 426, 595, 613 |
| BciVI | GTATCC | 1 cut(s) | 825 |
| BclI | TGATCA | 2 cut(s) | 381, 730 |
| BcoDI | GTCTC | 2 cut(s) | 754, 760 |
| BfaI | CTAG | 1 cut(s) | 636 |
| BfmI | CTRYAG | 1 cut(s) | 439 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BfuI | GTATCC | 1 cut(s) | 825 |
| BisI | GCNGC | 3 cut(s) | 153, 317, 501 |
| BlsI | GCNGC | 3 cut(s) | 154, 318, 502 |
| Bme1390I | CCNGG | 4 cut(s) | 149, 426, 595, 613 |
| Bme18I | GGWCC | 4 cut(s) | 56, 626, 687, 714 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 116 |
| BmeT110I | CYCGRG | 1 cut(s) | 554 |
| BmgT120I | GGNCC | 5 cut(s) | 56, 185, 626, 687, 714 |
| BmiI | GGNNCC | 6 cut(s) | 127, 187, 419, 628, 715, 891 |
| BmrFI | CCNGG | 4 cut(s) | 149, 426, 595, 613 |
| BmsI | GCATC | 2 cut(s) | 169, 814 |
| BpmI | CTGGAG | 1 cut(s) | 23 |
| BpuEI | CTTGAG | 1 cut(s) | 886 |
| BsaBI | GATNNNNATC | 1 cut(s) | 729 |
| BsaHI | GRCGYC | 2 cut(s) | 126, 591 |
| BsaJI | CCNNGG | 3 cut(s) | 59, 425, 717 |
| BsaWI | WCCGGW | 1 cut(s) | 115 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 593, 623, 625, 655 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 122, 427, 636, 710, 711 |
| Bse118I | RCCGGY | 2 cut(s) | 115, 886 |
| Bse1I | ACTGG | 1 cut(s) | 58 |
| Bse8I | GATNNNNATC | 1 cut(s) | 729 |
| BseBI | CCWGG | 4 cut(s) | 149, 426, 595, 613 |
| BseDI | CCNNGG | 3 cut(s) | 59, 425, 717 |
| BseGI | GGATG | 3 cut(s) | 160, 781, 798 |
| BseJI | GATNNNNATC | 1 cut(s) | 729 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 122, 427, 636, 710, 711 |
| BseMII | CTCAG | 4 cut(s) | 195, 318, 498, 526 |
| BseNI | ACTGG | 1 cut(s) | 58 |
| BsePI | GCGCGC | 2 cut(s) | 450, 452 |
| BsgI | GTGCAG | 1 cut(s) | 16 |
| Bsh1236I | CGCG | 7 cut(s) | 99, 240, 450, 452, 454, 791, 868 |
| BshFI | GGCC | 4 cut(s) | 152, 186, 282, 640 |
| BshNI | GGYRCC | 1 cut(s) | 125 |
| BshTI | ACCGGT | 1 cut(s) | 115 |
| BsiHKCI | CYCGRG | 1 cut(s) | 554 |
| BsiSI | CCGG | 2 cut(s) | 116, 887 |
| BslFI | GGGAC | 2 cut(s) | 612, 727 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 122, 427, 636, 710, 711 |
| BsmAI | GTCTC | 2 cut(s) | 754, 760 |
| BsmFI | GGGAC | 2 cut(s) | 612, 727 |
| BsnI | GGCC | 4 cut(s) | 152, 186, 282, 640 |
| BsoBI | CYCGRG | 1 cut(s) | 554 |
| Bsp1286I | GDGCHC | 1 cut(s) | 108 |
| Bsp143I | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| BspANI | GGCC | 4 cut(s) | 152, 186, 282, 640 |
| BspCNI | CTCAG | 4 cut(s) | 194, 319, 497, 525 |
| BspFNI | CGCG | 7 cut(s) | 99, 240, 450, 452, 454, 791, 868 |
| BspLI | GGNNCC | 6 cut(s) | 127, 187, 419, 628, 715, 891 |
| BspPI | GGATC | 1 cut(s) | 900 |
| BspT107I | GGYRCC | 1 cut(s) | 125 |
| BsrFI | RCCGGY | 2 cut(s) | 115, 886 |
| BsrI | ACTGG | 1 cut(s) | 58 |
| BssAI | RCCGGY | 2 cut(s) | 115, 886 |
| BssECI | CCNNGG | 3 cut(s) | 59, 425, 717 |
| BssHII | GCGCGC | 2 cut(s) | 450, 452 |
| BssMI | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| BssNI | GRCGYC | 2 cut(s) | 126, 591 |
| BssSI | CACGAG | 1 cut(s) | 881 |
| BssT1I | CCWWGG | 1 cut(s) | 59 |
| Bst2BI | CACGAG | 1 cut(s) | 881 |
| Bst2UI | CCWGG | 4 cut(s) | 149, 426, 595, 613 |
| Bst6I | CTCTTC | 1 cut(s) | 279 |
| BstACI | GRCGYC | 2 cut(s) | 126, 591 |
| BstC8I | GCNNGC | 8 cut(s) | 452, 454, 498, 648, 659, 663, 843, 888 |
| BstDEI | CTNAG | 5 cut(s) | 181, 327, 376, 484, 512 |
| BstF5I | GGATG | 3 cut(s) | 160, 781, 798 |
| BstFNI | CGCG | 7 cut(s) | 99, 240, 450, 452, 454, 791, 868 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 7 cut(s) | 128, 452, 454, 456, 618, 868, 915 |
| BstKTI | GATC | 6 cut(s) | 384, 448, 477, 733, 872, 908 |
| BstMAI | GTCTC | 2 cut(s) | 754, 760 |
| BstMBI | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 458 |
| BstNI | CCWGG | 4 cut(s) | 149, 426, 595, 613 |
| BstNSI | RCATGY | 1 cut(s) | 661 |
| BstSCI | CCNGG | 4 cut(s) | 147, 424, 593, 611 |
| BstSFI | CTRYAG | 1 cut(s) | 439 |
| BstUI | CGCG | 7 cut(s) | 99, 240, 450, 452, 454, 791, 868 |
| BstX2I | RGATCY | 1 cut(s) | 905 |
| BstYI | RGATCY | 1 cut(s) | 905 |
| BsuI | GTATCC | 1 cut(s) | 825 |
| BsuRI | GGCC | 4 cut(s) | 152, 186, 282, 640 |
| BtgZI | GCGATG | 1 cut(s) | 297 |
| BtsCI | GGATG | 3 cut(s) | 160, 781, 798 |
| BtsIMutI | CAGTG | 1 cut(s) | 51 |
| Cac8I | GCNNGC | 8 cut(s) | 452, 454, 498, 648, 659, 663, 843, 888 |
| CfoI | GCGC | 7 cut(s) | 128, 452, 454, 456, 618, 868, 915 |
| Cfr10I | RCCGGY | 2 cut(s) | 115, 886 |
| Cfr13I | GGNCC | 5 cut(s) | 56, 185, 626, 687, 714 |
| CseI | GACGC | 2 cut(s) | 599, 780 |
| Csp6I | GTAC | 2 cut(s) | 307, 346 |
| CspAI | ACCGGT | 1 cut(s) | 115 |
| CviAII | CATG | 5 cut(s) | 157, 356, 413, 658, 910 |
| CviQI | GTAC | 2 cut(s) | 307, 346 |
| DdeI | CTNAG | 5 cut(s) | 181, 327, 376, 484, 512 |
| DinI | GGCGCC | 1 cut(s) | 127 |
| DpnI | GATC | 6 cut(s) | 383, 447, 476, 732, 871, 907 |
| DpnII | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| DriI | GACNNNNNGTC | 1 cut(s) | 116 |
| EaeI | YGGCCR | 1 cut(s) | 280 |
| Eam1104I | CTCTTC | 1 cut(s) | 279 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 116 |
| EarI | CTCTTC | 1 cut(s) | 279 |
| EciI | GGCGGA | 3 cut(s) | 28, 240, 633 |
| Eco130I | CCWWGG | 1 cut(s) | 59 |
| Eco147I | AGGCCT | 1 cut(s) | 640 |
| Eco24I | GRGCYC | 1 cut(s) | 108 |
| Eco32I | GATATC | 1 cut(s) | 676 |
| Eco47I | GGWCC | 4 cut(s) | 56, 626, 687, 714 |
| Eco57I | CTGAAG | 1 cut(s) | 876 |
| Eco88I | CYCGRG | 1 cut(s) | 554 |
| EcoO109I | RGGNCCY | 2 cut(s) | 185, 714 |
| EcoRII | CCWGG | 4 cut(s) | 147, 424, 593, 611 |
| EcoRV | GATATC | 1 cut(s) | 676 |
| EcoT14I | CCWWGG | 1 cut(s) | 59 |
| EcoT22I | ATGCAT | 1 cut(s) | 162 |
| EcoT38I | GRGCYC | 1 cut(s) | 108 |
| EgeI | GGCGCC | 1 cut(s) | 127 |
| EheI | GGCGCC | 1 cut(s) | 127 |
| ErhI | CCWWGG | 1 cut(s) | 59 |
| FaeI | CATG | 5 cut(s) | 160, 359, 416, 661, 913 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 11, 43 |
| FaqI | GGGAC | 2 cut(s) | 612, 727 |
| FatI | CATG | 5 cut(s) | 156, 355, 412, 657, 909 |
| FauI | CCCGC | 1 cut(s) | 405 |
| FbaI | TGATCA | 2 cut(s) | 381, 730 |
| Fnu4HI | GCNGC | 3 cut(s) | 153, 317, 501 |
| FokI | GGATG | 3 cut(s) | 147, 785, 788 |
| FriOI | GRGCYC | 1 cut(s) | 108 |
| Fsp4HI | GCNGC | 3 cut(s) | 153, 317, 501 |
| FspBI | CTAG | 1 cut(s) | 636 |
| GlaI | GCGC | 7 cut(s) | 127, 451, 453, 455, 617, 867, 914 |
| GluI | GCNGC | 3 cut(s) | 153, 317, 501 |
| GsuI | CTGGAG | 1 cut(s) | 23 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HaeIII | GGCC | 4 cut(s) | 152, 186, 282, 640 |
| HapII | CCGG | 2 cut(s) | 116, 887 |
| HgaI | GACGC | 2 cut(s) | 599, 780 |
| HhaI | GCGC | 7 cut(s) | 128, 452, 454, 456, 618, 868, 915 |
| Hin1I | GRCGYC | 2 cut(s) | 126, 591 |
| Hin1II | CATG | 5 cut(s) | 160, 359, 416, 661, 913 |
| Hin6I | GCGC | 7 cut(s) | 126, 450, 452, 454, 616, 866, 913 |
| HinP1I | GCGC | 7 cut(s) | 126, 450, 452, 454, 616, 866, 913 |
| HinfI | GANTC | 3 cut(s) | 196, 211, 562 |
| HpaII | CCGG | 2 cut(s) | 116, 887 |
| HphI | GGTGA | 1 cut(s) | 458 |
| Hpy166II | GTNNAC | 2 cut(s) | 235, 309 |
| Hpy188I | TCNGA | 4 cut(s) | 110, 328, 487, 721 |
| Hpy188III | TCNNGA | 4 cut(s) | 200, 208, 854, 903 |
| Hpy8I | GTNNAC | 2 cut(s) | 235, 309 |
| Hpy99I | CGWCG | 2 cut(s) | 245, 593 |
| HpyAV | CCTTC | 2 cut(s) | 431, 592 |
| HpyCH4V | TGCA | 5 cut(s) | 18, 33, 160, 355, 665 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 458 |
| HpyF3I | CTNAG | 5 cut(s) | 181, 327, 376, 484, 512 |
| Hsp92I | GRCGYC | 2 cut(s) | 126, 591 |
| Hsp92II | CATG | 5 cut(s) | 160, 359, 416, 661, 913 |
| HspAI | GCGC | 7 cut(s) | 126, 450, 452, 454, 616, 866, 913 |
| KasI | GGCGCC | 1 cut(s) | 125 |
| KroI | GCCGGC | 1 cut(s) | 886 |
| KroNI | GCCGGC | 1 cut(s) | 888 |
| Ksp22I | TGATCA | 2 cut(s) | 381, 730 |
| Kzo9I | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| LmnI | GCTCC | 3 cut(s) | 535, 706, 895 |
| LweI | GCATC | 2 cut(s) | 169, 814 |
| MaeI | CTAG | 1 cut(s) | 636 |
| MalI | GATC | 6 cut(s) | 383, 447, 476, 732, 871, 907 |
| MauBI | CGCGCGCG | 1 cut(s) | 450 |
| MboI | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| MboII | GAAGA | 6 cut(s) | 19, 266, 518, 577, 734, 869 |
| MfeI | CAATTG | 1 cut(s) | 757 |
| MflI | RGATCY | 1 cut(s) | 905 |
| MhlI | GDGCHC | 1 cut(s) | 108 |
| MluCI | AATT | 4 cut(s) | 216, 392, 621, 757 |
| Mly113I | GGCGCC | 1 cut(s) | 126 |
| MmeI | TCCRAC | 1 cut(s) | 743 |
| Mph1103I | ATGCAT | 1 cut(s) | 162 |
| MroNI | GCCGGC | 1 cut(s) | 886 |
| MseI | TTAA | 2 cut(s) | 435, 922 |
| MspI | CCGG | 2 cut(s) | 116, 887 |
| MspR9I | CCNGG | 4 cut(s) | 149, 426, 595, 613 |
| MunI | CAATTG | 1 cut(s) | 757 |
| MvaI | CCWGG | 4 cut(s) | 149, 426, 595, 613 |
| MvnI | CGCG | 7 cut(s) | 99, 240, 450, 452, 454, 791, 868 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 458 |
| NaeI | GCCGGC | 1 cut(s) | 888 |
| NarI | GGCGCC | 1 cut(s) | 126 |
| NdeII | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| NgoMIV | GCCGGC | 1 cut(s) | 886 |
| NlaIII | CATG | 5 cut(s) | 160, 359, 416, 661, 913 |
| NlaIV | GGNNCC | 6 cut(s) | 127, 187, 419, 628, 715, 891 |
| NsiI | ATGCAT | 1 cut(s) | 162 |
| NspI | RCATGY | 1 cut(s) | 661 |
| PaeI | GCATGC | 1 cut(s) | 661 |
| PauI | GCGCGC | 2 cut(s) | 450, 452 |
| PceI | AGGCCT | 1 cut(s) | 640 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 237 |
| PdiI | GCCGGC | 1 cut(s) | 888 |
| PfeI | GAWTC | 3 cut(s) | 196, 211, 562 |
| PinAI | ACCGGT | 1 cut(s) | 115 |
| PkrI | GCNGC | 3 cut(s) | 154, 318, 502 |
| PluTI | GGCGCC | 1 cut(s) | 129 |
| PpuMI | RGGWCCY | 1 cut(s) | 714 |
| Psp5II | RGGWCCY | 1 cut(s) | 714 |
| Psp6I | CCWGG | 4 cut(s) | 147, 424, 593, 611 |
| PspGI | CCWGG | 4 cut(s) | 147, 424, 593, 611 |
| PspN4I | GGNNCC | 6 cut(s) | 127, 187, 419, 628, 715, 891 |
| PspPI | GGNCC | 5 cut(s) | 56, 185, 626, 687, 714 |
| PspPPI | RGGWCCY | 1 cut(s) | 714 |
| PsuI | RGATCY | 1 cut(s) | 905 |
| PteI | GCGCGC | 2 cut(s) | 450, 452 |
| RsaI | GTAC | 2 cut(s) | 308, 347 |
| RsaNI | GTAC | 2 cut(s) | 307, 346 |
| SaqAI | TTAA | 2 cut(s) | 435, 922 |
| SatI | GCNGC | 3 cut(s) | 153, 317, 501 |
| Sau3AI | GATC | 6 cut(s) | 381, 445, 474, 730, 869, 905 |
| Sau96I | GGNCC | 5 cut(s) | 56, 185, 626, 687, 714 |
| ScrFI | CCNGG | 4 cut(s) | 149, 426, 595, 613 |
| SduI | GDGCHC | 1 cut(s) | 108 |
| SetI | ASST | 7 cut(s) | 38, 61, 308, 351, 372, 611, 719 |
| SfaNI | GCATC | 2 cut(s) | 169, 814 |
| SfcI | CTRYAG | 1 cut(s) | 439 |
| SfoI | GGCGCC | 1 cut(s) | 127 |
| SinI | GGWCC | 4 cut(s) | 56, 626, 687, 714 |
| SmlI | CTYRAG | 1 cut(s) | 901 |
| SmoI | CTYRAG | 1 cut(s) | 901 |
| SphI | GCATGC | 1 cut(s) | 661 |
| Sse9I | AATT | 4 cut(s) | 216, 392, 621, 757 |
| SseBI | AGGCCT | 1 cut(s) | 640 |
| SspDI | GGCGCC | 1 cut(s) | 125 |
| SspMI | CTAG | 1 cut(s) | 636 |
| StuI | AGGCCT | 1 cut(s) | 640 |
| StyD4I | CCNGG | 4 cut(s) | 147, 424, 593, 611 |
| StyI | CCWWGG | 1 cut(s) | 59 |
| TaqI | TCGA | 4 cut(s) | 372, 588, 672, 847 |
| TasI | AATT | 4 cut(s) | 216, 392, 621, 757 |
| TauI | GCSGC | 3 cut(s) | 155, 319, 503 |
| TfiI | GAWTC | 3 cut(s) | 196, 211, 562 |
| Tru1I | TTAA | 2 cut(s) | 435, 922 |
| Tru9I | TTAA | 2 cut(s) | 435, 922 |
| TscAI | CASTG | 1 cut(s) | 58 |
| TspDTI | ATGAA | 3 cut(s) | 13, 372, 795 |
| TspRI | CASTG | 1 cut(s) | 58 |
| VpaK11BI | GGWCC | 4 cut(s) | 56, 626, 687, 714 |
| XapI | RAATTY | 2 cut(s) | 216, 392 |
| XceI | RCATGY | 1 cut(s) | 661 |
| XspI | CTAG | 1 cut(s) | 636 |
| Zsp2I | ATGCAT | 1 cut(s) | 162 |