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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 280 |
| AccII | CGCG | 6 cut(s) | 53, 59, 231, 320, 383, 389 |
| AciI | CCGC | 8 cut(s) | 5, 9, 53, 191, 377, 381, 387, 588 |
| AclWI | GGATC | 1 cut(s) | 357 |
| AcoI | YGGCCR | 3 cut(s) | 6, 378, 543 |
| AcuI | CTGAAG | 1 cut(s) | 503 |
| AcyI | GRCGYC | 1 cut(s) | 311 |
| AfaI | GTAC | 2 cut(s) | 234, 460 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 104 |
| AflIII | ACRYGT | 1 cut(s) | 57 |
| AgsI | TTSAA | 3 cut(s) | 41, 239, 512 |
| AjnI | CCWGG | 3 cut(s) | 250, 395, 545 |
| AluBI | AGCT | 1 cut(s) | 332 |
| AluI | AGCT | 1 cut(s) | 332 |
| Alw26I | GTCTC | 1 cut(s) | 609 |
| AlwI | GGATC | 1 cut(s) | 357 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 146 |
| Ama87I | CYCGRG | 1 cut(s) | 161 |
| AoxI | GGCC | 7 cut(s) | 6, 378, 393, 402, 522, 543, 615 |
| ApeKI | GCWGC | 4 cut(s) | 2, 176, 179, 193 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 415, 447 |
| AscI | GGCGCGCC | 1 cut(s) | 318 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 141 |
| AspA2I | CCTAGG | 1 cut(s) | 292 |
| AspLEI | GCGC | 5 cut(s) | 53, 320, 322, 391, 601 |
| AspS9I | GGNCC | 3 cut(s) | 403, 501, 523 |
| AsuC2I | CCSGG | 2 cut(s) | 315, 455 |
| AsuHPI | GGTGA | 1 cut(s) | 544 |
| AvaI | CYCGRG | 1 cut(s) | 161 |
| AvaII | GGWCC | 1 cut(s) | 501 |
| AvrII | CCTAGG | 1 cut(s) | 292 |
| BauI | CACGAG | 1 cut(s) | 325 |
| BbvI | GCAGC | 3 cut(s) | 163, 166, 180 |
| BccI | CCATC | 1 cut(s) | 501 |
| BceAI | ACGGC | 2 cut(s) | 64, 558 |
| BciT130I | CCWGG | 3 cut(s) | 252, 397, 547 |
| BcnI | CCSGG | 2 cut(s) | 315, 455 |
| BcoDI | GTCTC | 1 cut(s) | 609 |
| BfaI | CTAG | 3 cut(s) | 270, 293, 619 |
| BfmI | CTRYAG | 2 cut(s) | 147, 419 |
| BfoI | RGCGCY | 1 cut(s) | 602 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 401 |
| BglII | AGATCT | 1 cut(s) | 514 |
| BisI | GCNGC | 9 cut(s) | 3, 6, 9, 177, 180, 194, 378, 381, 588 |
| BlnI | CCTAGG | 1 cut(s) | 292 |
| BlsI | GCNGC | 9 cut(s) | 4, 7, 10, 178, 181, 195, 379, 382, 589 |
| Bme1390I | CCNGG | 5 cut(s) | 252, 315, 397, 455, 547 |
| Bme18I | GGWCC | 1 cut(s) | 501 |
| BmeT110I | CYCGRG | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 3 cut(s) | 403, 501, 523 |
| BmiI | GGNNCC | 2 cut(s) | 491, 503 |
| BmrFI | CCNGG | 5 cut(s) | 252, 315, 397, 455, 547 |
| BmsI | GCATC | 2 cut(s) | 73, 256 |
| BpmI | CTGGAG | 3 cut(s) | 193, 273, 593 |
| Bpu10I | CCTNAGC | 2 cut(s) | 123, 583 |
| BpuEI | CTTGAG | 1 cut(s) | 591 |
| BpuMI | CCSGG | 2 cut(s) | 315, 455 |
| BsaHI | GRCGYC | 1 cut(s) | 311 |
| BsaJI | CCNNGG | 2 cut(s) | 292, 454 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 273, 303 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 104 |
| Bse1I | ACTGG | 4 cut(s) | 128, 219, 576, 618 |
| BseBI | CCWGG | 3 cut(s) | 252, 397, 547 |
| BseDI | CCNNGG | 2 cut(s) | 292, 454 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BseMII | CTCAG | 3 cut(s) | 114, 335, 511 |
| BseNI | ACTGG | 4 cut(s) | 128, 219, 576, 618 |
| BsePI | GCGCGC | 1 cut(s) | 318 |
| BseRI | GAGGAG | 1 cut(s) | 237 |
| BseX3I | CGGCCG | 2 cut(s) | 6, 378 |
| BseXI | GCAGC | 3 cut(s) | 163, 166, 180 |
| Bsh1236I | CGCG | 6 cut(s) | 53, 59, 231, 320, 383, 389 |
| Bsh1285I | CGRYCG | 4 cut(s) | 9, 381, 387, 454 |
| BshFI | GGCC | 7 cut(s) | 8, 380, 395, 404, 524, 545, 617 |
| BsiEI | CGRYCG | 4 cut(s) | 9, 381, 387, 454 |
| BsiHKCI | CYCGRG | 1 cut(s) | 161 |
| BsiSI | CCGG | 2 cut(s) | 315, 454 |
| BslFI | GGGAC | 1 cut(s) | 62 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BsmAI | GTCTC | 1 cut(s) | 609 |
| BsmFI | GGGAC | 1 cut(s) | 62 |
| BsnI | GGCC | 7 cut(s) | 8, 380, 395, 404, 524, 545, 617 |
| BsoBI | CYCGRG | 1 cut(s) | 161 |
| Bsp143I | GATC | 2 cut(s) | 349, 514 |
| BspACI | CCGC | 8 cut(s) | 5, 9, 53, 191, 377, 381, 387, 588 |
| BspANI | GGCC | 7 cut(s) | 8, 380, 395, 404, 524, 545, 617 |
| BspCNI | CTCAG | 3 cut(s) | 115, 336, 510 |
| BspFNI | CGCG | 6 cut(s) | 53, 59, 231, 320, 383, 389 |
| BspLI | GGNNCC | 2 cut(s) | 491, 503 |
| BspMAI | CTGCAG | 1 cut(s) | 423 |
| BspPI | GGATC | 1 cut(s) | 357 |
| BsrI | ACTGG | 4 cut(s) | 128, 219, 576, 618 |
| BssECI | CCNNGG | 2 cut(s) | 292, 454 |
| BssHII | GCGCGC | 1 cut(s) | 318 |
| BssMI | GATC | 2 cut(s) | 349, 514 |
| BssNI | GRCGYC | 1 cut(s) | 311 |
| BssSI | CACGAG | 1 cut(s) | 325 |
| BssT1I | CCWWGG | 1 cut(s) | 292 |
| Bst2BI | CACGAG | 1 cut(s) | 325 |
| Bst2UI | CCWGG | 3 cut(s) | 252, 397, 547 |
| BstACI | GRCGYC | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 5 cut(s) | 225, 229, 320, 393, 402 |
| BstDEI | CTNAG | 5 cut(s) | 123, 344, 445, 497, 583 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 102 |
| BstFNI | CGCG | 6 cut(s) | 53, 59, 231, 320, 383, 389 |
| BstH2I | RGCGCY | 1 cut(s) | 602 |
| BstHHI | GCGC | 5 cut(s) | 53, 320, 322, 391, 601 |
| BstKTI | GATC | 2 cut(s) | 352, 517 |
| BstMAI | GTCTC | 1 cut(s) | 609 |
| BstMBI | GATC | 2 cut(s) | 349, 514 |
| BstMCI | CGRYCG | 4 cut(s) | 9, 381, 387, 454 |
| BstNI | CCWGG | 3 cut(s) | 252, 397, 547 |
| BstSCI | CCNGG | 5 cut(s) | 250, 313, 395, 453, 545 |
| BstSFI | CTRYAG | 2 cut(s) | 147, 419 |
| BstUI | CGCG | 6 cut(s) | 53, 59, 231, 320, 383, 389 |
| BstV1I | GCAGC | 3 cut(s) | 163, 166, 180 |
| BstX2I | RGATCY | 2 cut(s) | 349, 514 |
| BstYI | RGATCY | 2 cut(s) | 349, 514 |
| BstZI | CGGCCG | 2 cut(s) | 6, 378 |
| BsuRI | GGCC | 7 cut(s) | 8, 380, 395, 404, 524, 545, 617 |
| BtsIMutI | CAGTG | 1 cut(s) | 135 |
| Cac8I | GCNNGC | 5 cut(s) | 225, 229, 320, 393, 402 |
| CaiI | CAGNNNCTG | 1 cut(s) | 146 |
| CciNI | GCGGCCGC | 2 cut(s) | 6, 378 |
| CfoI | GCGC | 5 cut(s) | 53, 320, 322, 391, 601 |
| Cfr13I | GGNCC | 3 cut(s) | 403, 501, 523 |
| CseI | GACGC | 3 cut(s) | 65, 319, 487 |
| Csp6I | GTAC | 2 cut(s) | 233, 459 |
| CviQI | GTAC | 2 cut(s) | 233, 459 |
| DdeI | CTNAG | 5 cut(s) | 123, 344, 445, 497, 583 |
| DpnI | GATC | 2 cut(s) | 351, 516 |
| DpnII | GATC | 2 cut(s) | 349, 514 |
| EaeI | YGGCCR | 3 cut(s) | 6, 378, 543 |
| EagI | CGGCCG | 2 cut(s) | 6, 378 |
| EclXI | CGGCCG | 2 cut(s) | 6, 378 |
| Eco130I | CCWWGG | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 501 |
| Eco52I | CGGCCG | 2 cut(s) | 6, 378 |
| Eco57I | CTGAAG | 1 cut(s) | 503 |
| Eco88I | CYCGRG | 1 cut(s) | 161 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 102 |
| EcoO109I | RGGNCCY | 1 cut(s) | 501 |
| EcoRII | CCWGG | 3 cut(s) | 250, 395, 545 |
| EcoT14I | CCWWGG | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 292 |
| FaiI | YATR | 5 cut(s) | 63, 171, 260, 485, 558 |
| FaqI | GGGAC | 1 cut(s) | 62 |
| FblI | GTMKAC | 1 cut(s) | 280 |
| Fnu4HI | GCNGC | 9 cut(s) | 3, 6, 9, 177, 180, 194, 378, 381, 588 |
| Fsp4HI | GCNGC | 9 cut(s) | 3, 6, 9, 177, 180, 194, 378, 381, 588 |
| FspBI | CTAG | 3 cut(s) | 270, 293, 619 |
| GlaI | GCGC | 5 cut(s) | 52, 319, 321, 390, 600 |
| GluI | GCNGC | 9 cut(s) | 3, 6, 9, 177, 180, 194, 378, 381, 588 |
| GsuI | CTGGAG | 3 cut(s) | 193, 273, 593 |
| HaeII | RGCGCY | 1 cut(s) | 602 |
| HaeIII | GGCC | 7 cut(s) | 8, 380, 395, 404, 524, 545, 617 |
| HapII | CCGG | 2 cut(s) | 315, 454 |
| HgaI | GACGC | 3 cut(s) | 65, 319, 487 |
| HhaI | GCGC | 5 cut(s) | 53, 320, 322, 391, 601 |
| Hin1I | GRCGYC | 1 cut(s) | 311 |
| Hin6I | GCGC | 5 cut(s) | 51, 318, 320, 389, 599 |
| HinP1I | GCGC | 5 cut(s) | 51, 318, 320, 389, 599 |
| HinfI | GANTC | 3 cut(s) | 244, 297, 508 |
| HpaII | CCGG | 2 cut(s) | 315, 454 |
| HphI | GGTGA | 1 cut(s) | 544 |
| Hpy166II | GTNNAC | 2 cut(s) | 118, 281 |
| Hpy188I | TCNGA | 2 cut(s) | 309, 345 |
| Hpy188III | TCNNGA | 5 cut(s) | 161, 210, 499, 512, 608 |
| Hpy8I | GTNNAC | 2 cut(s) | 118, 281 |
| HpyAV | CCTTC | 2 cut(s) | 269, 367 |
| HpyCH4IV | ACGT | 1 cut(s) | 283 |
| HpyCH4V | TGCA | 1 cut(s) | 421 |
| HpyF3I | CTNAG | 5 cut(s) | 123, 344, 445, 497, 583 |
| HpySE526I | ACGT | 1 cut(s) | 283 |
| Hsp92I | GRCGYC | 1 cut(s) | 311 |
| HspAI | GCGC | 5 cut(s) | 51, 318, 320, 389, 599 |
| Kzo9I | GATC | 2 cut(s) | 349, 514 |
| LmnI | GCTCC | 1 cut(s) | 574 |
| Lsp1109I | GCAGC | 3 cut(s) | 163, 166, 180 |
| LweI | GCATC | 2 cut(s) | 73, 256 |
| MaeI | CTAG | 3 cut(s) | 270, 293, 619 |
| MaeII | ACGT | 1 cut(s) | 283 |
| MaeIII | GTNAC | 2 cut(s) | 241, 538 |
| MalI | GATC | 2 cut(s) | 351, 516 |
| MboI | GATC | 2 cut(s) | 349, 514 |
| MboII | GAAGA | 1 cut(s) | 509 |
| MflI | RGATCY | 2 cut(s) | 349, 514 |
| MluCI | AATT | 2 cut(s) | 101, 527 |
| MluI | ACGCGT | 1 cut(s) | 57 |
| MlyI | GAGTC | 2 cut(s) | 238, 291 |
| MroXI | GAANNNNTTC | 1 cut(s) | 141 |
| MseI | TTAA | 1 cut(s) | 530 |
| MspA1I | CMGCKG | 1 cut(s) | 193 |
| MspI | CCGG | 2 cut(s) | 315, 454 |
| MspR9I | CCNGG | 5 cut(s) | 252, 315, 397, 455, 547 |
| MvaI | CCWGG | 3 cut(s) | 252, 397, 547 |
| MvnI | CGCG | 6 cut(s) | 53, 59, 231, 320, 383, 389 |
| NciI | CCSGG | 2 cut(s) | 315, 455 |
| NdeII | GATC | 2 cut(s) | 349, 514 |
| NlaIV | GGNNCC | 2 cut(s) | 491, 503 |
| NmuCI | GTSAC | 1 cut(s) | 241 |
| NotI | GCGGCCGC | 2 cut(s) | 6, 378 |
| PaeR7I | CTCGAG | 1 cut(s) | 161 |
| PalAI | GGCGCGCC | 1 cut(s) | 318 |
| PauI | GCGCGC | 1 cut(s) | 318 |
| PdmI | GAANNNNTTC | 1 cut(s) | 141 |
| PfeI | GAWTC | 1 cut(s) | 508 |
| PfoI | TCCNGGA | 1 cut(s) | 250 |
| PkrI | GCNGC | 9 cut(s) | 4, 7, 10, 178, 181, 195, 379, 382, 589 |
| PleI | GAGTC | 2 cut(s) | 238, 291 |
| PpsI | GAGTC | 2 cut(s) | 238, 291 |
| PpuMI | RGGWCCY | 1 cut(s) | 501 |
| Psp5II | RGGWCCY | 1 cut(s) | 501 |
| Psp6I | CCWGG | 3 cut(s) | 250, 395, 545 |
| PspGI | CCWGG | 3 cut(s) | 250, 395, 545 |
| PspN4I | GGNNCC | 2 cut(s) | 491, 503 |
| PspPI | GGNCC | 3 cut(s) | 403, 501, 523 |
| PspPPI | RGGWCCY | 1 cut(s) | 501 |
| PstI | CTGCAG | 1 cut(s) | 423 |
| PstNI | CAGNNNCTG | 1 cut(s) | 146 |
| PsuI | RGATCY | 2 cut(s) | 349, 514 |
| PteI | GCGCGC | 1 cut(s) | 318 |
| RsaI | GTAC | 2 cut(s) | 234, 460 |
| RsaNI | GTAC | 2 cut(s) | 233, 459 |
| SaqAI | TTAA | 1 cut(s) | 530 |
| SatI | GCNGC | 9 cut(s) | 3, 6, 9, 177, 180, 194, 378, 381, 588 |
| Sau3AI | GATC | 2 cut(s) | 349, 514 |
| Sau96I | GGNCC | 3 cut(s) | 403, 501, 523 |
| SchI | GAGTC | 2 cut(s) | 238, 291 |
| ScrFI | CCNGG | 5 cut(s) | 252, 315, 397, 455, 547 |
| SetI | ASST | 6 cut(s) | 21, 100, 280, 286, 334, 557 |
| SfaNI | GCATC | 2 cut(s) | 73, 256 |
| SfcI | CTRYAG | 2 cut(s) | 147, 419 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 401 |
| Sfr274I | CTCGAG | 1 cut(s) | 161 |
| SgsI | GGCGCGCC | 1 cut(s) | 318 |
| SinI | GGWCC | 1 cut(s) | 501 |
| SlaI | CTCGAG | 1 cut(s) | 161 |
| SmlI | CTYRAG | 2 cut(s) | 161, 606 |
| SmoI | CTYRAG | 2 cut(s) | 161, 606 |
| Sse9I | AATT | 2 cut(s) | 101, 527 |
| SsiI | CCGC | 8 cut(s) | 5, 9, 53, 191, 377, 381, 387, 588 |
| SspMI | CTAG | 3 cut(s) | 270, 293, 619 |
| StyD4I | CCNGG | 5 cut(s) | 250, 313, 395, 453, 545 |
| StyI | CCWWGG | 1 cut(s) | 292 |
| TaiI | ACGT | 1 cut(s) | 286 |
| TaqI | TCGA | 4 cut(s) | 162, 300, 438, 594 |
| TasI | AATT | 2 cut(s) | 101, 527 |
| TauI | GCSGC | 5 cut(s) | 8, 11, 380, 383, 590 |
| TfiI | GAWTC | 1 cut(s) | 508 |
| Tru1I | TTAA | 1 cut(s) | 530 |
| Tru9I | TTAA | 1 cut(s) | 530 |
| TscAI | CASTG | 1 cut(s) | 135 |
| TseFI | GTSAC | 1 cut(s) | 241 |
| TseI | GCWGC | 4 cut(s) | 2, 176, 179, 193 |
| Tsp45I | GTSAC | 1 cut(s) | 241 |
| TspDTI | ATGAA | 1 cut(s) | 126 |
| TspGWI | ACGGA | 1 cut(s) | 440 |
| TspRI | CASTG | 1 cut(s) | 135 |
| VpaK11BI | GGWCC | 1 cut(s) | 501 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 102 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 331 |
| XhoI | CTCGAG | 1 cut(s) | 161 |
| XmaJI | CCTAGG | 1 cut(s) | 292 |
| XmiI | GTMKAC | 1 cut(s) | 280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 141 |
| XspI | CTAG | 3 cut(s) | 270, 293, 619 |