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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 732 |
| Acc36I | ACCTGC | 1 cut(s) | 97 |
| AccB1I | GGYRCC | 1 cut(s) | 311 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 64 |
| AccBSI | CCGCTC | 3 cut(s) | 416, 643, 719 |
| AccII | CGCG | 1 cut(s) | 510 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AcyI | GRCGYC | 1 cut(s) | 312 |
| AfaI | GTAC | 2 cut(s) | 306, 513 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 106, 221, 410, 555, 760, 973, 997 |
| AgsI | TTSAA | 3 cut(s) | 518, 875, 950 |
| AjiI | CACGTC | 1 cut(s) | 82 |
| AjnI | CCWGG | 7 cut(s) | 63, 548, 592, 605, 737, 747, 899 |
| AluBI | AGCT | 8 cut(s) | 123, 202, 443, 506, 971, 986, 1007, 1019 |
| AluI | AGCT | 8 cut(s) | 123, 202, 443, 506, 971, 986, 1007, 1019 |
| Alw26I | GTCTC | 3 cut(s) | 798, 819, 963 |
| AoxI | GGCC | 6 cut(s) | 26, 273, 546, 763, 942, 975 |
| ApeKI | GCWGC | 9 cut(s) | 68, 296, 355, 455, 458, 685, 986, 1007, 1010 |
| AseI | ATTAAT | 1 cut(s) | 708 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 662 |
| AspLEI | GCGC | 4 cut(s) | 36, 208, 314, 733 |
| AspS9I | GGNCC | 7 cut(s) | 91, 628, 645, 751, 763, 855, 976 |
| AsuC2I | CCSGG | 2 cut(s) | 222, 405 |
| AsuHPI | GGTGA | 5 cut(s) | 16, 236, 347, 358, 658 |
| AsuNHI | GCTAGC | 1 cut(s) | 202 |
| AvaII | GGWCC | 5 cut(s) | 91, 628, 645, 751, 855 |
| AxyI | CCTNAGG | 1 cut(s) | 168 |
| BanI | GGYRCC | 1 cut(s) | 311 |
| BanII | GRGCYC | 2 cut(s) | 561, 613 |
| BauI | CACGAG | 1 cut(s) | 263 |
| BbsI | GAAGAC | 1 cut(s) | 686 |
| BbvI | GCAGC | 9 cut(s) | 80, 283, 367, 442, 445, 672, 973, 994, 997 |
| BccI | CCATC | 2 cut(s) | 548, 656 |
| BceAI | ACGGC | 1 cut(s) | 434 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 64, 98 |
| BciT130I | CCWGG | 7 cut(s) | 65, 550, 594, 607, 739, 749, 901 |
| BcnI | CCSGG | 2 cut(s) | 222, 405 |
| BcoDI | GTCTC | 3 cut(s) | 798, 819, 963 |
| BfaI | CTAG | 6 cut(s) | 194, 203, 926, 938, 968, 1020 |
| BfmI | CTRYAG | 1 cut(s) | 686 |
| BfoI | RGCGCY | 3 cut(s) | 37, 209, 315 |
| BfuAI | ACCTGC | 1 cut(s) | 97 |
| BmcAI | AGTACT | 1 cut(s) | 306 |
| Bme1390I | CCNGG | 9 cut(s) | 65, 222, 405, 550, 594, 607, 739, 749, 901 |
| Bme18I | GGWCC | 5 cut(s) | 91, 628, 645, 751, 855 |
| BmgBI | CACGTC | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 7 cut(s) | 91, 628, 645, 751, 763, 855, 976 |
| BmrFI | CCNGG | 9 cut(s) | 65, 222, 405, 550, 594, 607, 739, 749, 901 |
| BmrI | ACTGGG | 1 cut(s) | 95 |
| BmsI | GCATC | 2 cut(s) | 80, 608 |
| BmtI | GCTAGC | 1 cut(s) | 206 |
| BmuI | ACTGGG | 1 cut(s) | 95 |
| BpiI | GAAGAC | 1 cut(s) | 686 |
| Bpu10I | CCTNAGC | 2 cut(s) | 477, 972 |
| BpuEI | CTTGAG | 2 cut(s) | 219, 926 |
| BpuMI | CCSGG | 2 cut(s) | 222, 405 |
| BsaBI | GATNNNNATC | 1 cut(s) | 395 |
| BsaHI | GRCGYC | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 5 cut(s) | 38, 404, 549, 606, 747 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 106, 221, 410, 555, 760, 973, 997 |
| Bse118I | RCCGGY | 1 cut(s) | 332 |
| Bse1I | ACTGG | 2 cut(s) | 101, 498 |
| Bse21I | CCTNAGG | 1 cut(s) | 168 |
| Bse8I | GATNNNNATC | 1 cut(s) | 395 |
| BseBI | CCWGG | 7 cut(s) | 65, 550, 594, 607, 739, 749, 901 |
| BseDI | CCNNGG | 5 cut(s) | 38, 404, 549, 606, 747 |
| BseGI | GGATG | 5 cut(s) | 187, 396, 559, 582, 599 |
| BseJI | GATNNNNATC | 1 cut(s) | 395 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 106, 221, 410, 555, 760, 973, 997 |
| BseMII | CTCAG | 4 cut(s) | 159, 468, 645, 986 |
| BseNI | ACTGG | 2 cut(s) | 101, 498 |
| BseX3I | CGGCCG | 1 cut(s) | 273 |
| BseXI | GCAGC | 9 cut(s) | 80, 283, 367, 442, 445, 672, 973, 994, 997 |
| BsgI | GTGCAG | 2 cut(s) | 125, 228 |
| Bsh1236I | CGCG | 1 cut(s) | 510 |
| Bsh1285I | CGRYCG | 3 cut(s) | 276, 291, 328 |
| BshFI | GGCC | 6 cut(s) | 28, 275, 548, 765, 944, 977 |
| BshNI | GGYRCC | 1 cut(s) | 311 |
| BsiEI | CGRYCG | 3 cut(s) | 276, 291, 328 |
| BsiSI | CCGG | 4 cut(s) | 222, 272, 333, 404 |
| BslFI | GGGAC | 3 cut(s) | 77, 561, 841 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 106, 221, 410, 555, 760, 973, 997 |
| BsmAI | GTCTC | 3 cut(s) | 798, 819, 963 |
| BsmFI | GGGAC | 3 cut(s) | 77, 561, 841 |
| BsnI | GGCC | 6 cut(s) | 28, 275, 548, 765, 944, 977 |
| Bsp1286I | GDGCHC | 2 cut(s) | 561, 613 |
| Bsp19I | CCATGG | 1 cut(s) | 38 |
| BspANI | GGCC | 6 cut(s) | 28, 275, 548, 765, 944, 977 |
| BspCNI | CTCAG | 4 cut(s) | 160, 469, 646, 985 |
| BspFNI | CGCG | 1 cut(s) | 510 |
| BspHI | TCATGA | 1 cut(s) | 436 |
| BspMAI | CTGCAG | 1 cut(s) | 690 |
| BspMI | ACCTGC | 1 cut(s) | 97 |
| BspOI | GCTAGC | 1 cut(s) | 206 |
| BspT107I | GGYRCC | 1 cut(s) | 311 |
| BsrBI | CCGCTC | 3 cut(s) | 416, 643, 719 |
| BsrFI | RCCGGY | 1 cut(s) | 332 |
| BsrI | ACTGG | 2 cut(s) | 101, 498 |
| BssAI | RCCGGY | 1 cut(s) | 332 |
| BssECI | CCNNGG | 5 cut(s) | 38, 404, 549, 606, 747 |
| BssNI | GRCGYC | 1 cut(s) | 312 |
| BssSI | CACGAG | 1 cut(s) | 263 |
| BssT1I | CCWWGG | 1 cut(s) | 38 |
| Bst2BI | CACGAG | 1 cut(s) | 263 |
| Bst2UI | CCWGG | 7 cut(s) | 65, 550, 594, 607, 739, 749, 901 |
| BstACI | GRCGYC | 1 cut(s) | 312 |
| BstC8I | GCNNGC | 9 cut(s) | 26, 125, 204, 243, 360, 508, 735, 744, 1005 |
| BstDEI | CTNAG | 4 cut(s) | 168, 477, 654, 972 |
| BstDSI | CCRYGG | 1 cut(s) | 38 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 971 |
| BstF5I | GGATG | 5 cut(s) | 187, 396, 559, 582, 599 |
| BstFNI | CGCG | 1 cut(s) | 510 |
| BstH2I | RGCGCY | 3 cut(s) | 37, 209, 315 |
| BstHHI | GCGC | 4 cut(s) | 36, 208, 314, 733 |
| BstMAI | GTCTC | 3 cut(s) | 798, 819, 963 |
| BstMCI | CGRYCG | 3 cut(s) | 276, 291, 328 |
| BstNI | CCWGG | 7 cut(s) | 65, 550, 594, 607, 739, 749, 901 |
| BstSCI | CCNGG | 9 cut(s) | 63, 220, 403, 548, 592, 605, 737, 747, 899 |
| BstSFI | CTRYAG | 1 cut(s) | 686 |
| BstUI | CGCG | 1 cut(s) | 510 |
| BstV1I | GCAGC | 9 cut(s) | 80, 283, 367, 442, 445, 672, 973, 994, 997 |
| BstV2I | GAAGAC | 1 cut(s) | 686 |
| BstZI | CGGCCG | 1 cut(s) | 273 |
| Bsu36I | CCTNAGG | 1 cut(s) | 168 |
| BsuRI | GGCC | 6 cut(s) | 28, 275, 548, 765, 944, 977 |
| BtgI | CCRYGG | 1 cut(s) | 38 |
| BtrI | CACGTC | 1 cut(s) | 82 |
| BtsCI | GGATG | 5 cut(s) | 187, 396, 559, 582, 599 |
| BtsI | GCAGTG | 1 cut(s) | 470 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 470, 651 |
| BveI | ACCTGC | 1 cut(s) | 97 |
| Cac8I | GCNNGC | 9 cut(s) | 26, 125, 204, 243, 360, 508, 735, 744, 1005 |
| CciI | TCATGA | 1 cut(s) | 436 |
| CfoI | GCGC | 4 cut(s) | 36, 208, 314, 733 |
| Cfr10I | RCCGGY | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 7 cut(s) | 91, 628, 645, 751, 763, 855, 976 |
| Csp6I | GTAC | 2 cut(s) | 305, 512 |
| CviAII | CATG | 4 cut(s) | 39, 368, 437, 446 |
| CviQI | GTAC | 2 cut(s) | 305, 512 |
| DdeI | CTNAG | 4 cut(s) | 168, 477, 654, 972 |
| DinI | GGCGCC | 1 cut(s) | 313 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| EagI | CGGCCG | 1 cut(s) | 273 |
| EciI | GGCGGA | 1 cut(s) | 592 |
| EclXI | CGGCCG | 1 cut(s) | 273 |
| Eco130I | CCWWGG | 1 cut(s) | 38 |
| Eco24I | GRGCYC | 2 cut(s) | 561, 613 |
| Eco47I | GGWCC | 5 cut(s) | 91, 628, 645, 751, 855 |
| Eco52I | CGGCCG | 1 cut(s) | 273 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| Eco81I | CCTNAGG | 1 cut(s) | 168 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 971 |
| EcoO109I | RGGNCCY | 2 cut(s) | 628, 763 |
| EcoRII | CCWGG | 7 cut(s) | 63, 548, 592, 605, 737, 747, 899 |
| EcoT14I | CCWWGG | 1 cut(s) | 38 |
| EcoT38I | GRGCYC | 2 cut(s) | 561, 613 |
| EgeI | GGCGCC | 1 cut(s) | 313 |
| EheI | GGCGCC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 1 cut(s) | 38 |
| FaeI | CATG | 4 cut(s) | 42, 371, 440, 449 |
| FaiI | YATR | 8 cut(s) | 40, 113, 344, 369, 428, 438, 447, 539 |
| FaqI | GGGAC | 3 cut(s) | 77, 561, 841 |
| FatI | CATG | 4 cut(s) | 38, 367, 436, 445 |
| FauI | CCCGC | 1 cut(s) | 373 |
| FokI | GGATG | 5 cut(s) | 174, 403, 566, 569, 586 |
| FriOI | GRGCYC | 2 cut(s) | 561, 613 |
| FspBI | CTAG | 6 cut(s) | 194, 203, 926, 938, 968, 1020 |
| FspI | TGCGCA | 1 cut(s) | 732 |
| GlaI | GCGC | 4 cut(s) | 35, 207, 313, 732 |
| HaeII | RGCGCY | 3 cut(s) | 37, 209, 315 |
| HaeIII | GGCC | 6 cut(s) | 28, 275, 548, 765, 944, 977 |
| HapII | CCGG | 4 cut(s) | 222, 272, 333, 404 |
| HhaI | GCGC | 4 cut(s) | 36, 208, 314, 733 |
| Hin1I | GRCGYC | 1 cut(s) | 312 |
| Hin1II | CATG | 4 cut(s) | 42, 371, 440, 449 |
| Hin6I | GCGC | 4 cut(s) | 34, 206, 312, 731 |
| HinP1I | GCGC | 4 cut(s) | 34, 206, 312, 731 |
| HinfI | GANTC | 3 cut(s) | 43, 574, 691 |
| HpaII | CCGG | 4 cut(s) | 222, 272, 333, 404 |
| HphI | GGTGA | 5 cut(s) | 16, 236, 347, 358, 658 |
| Hpy166II | GTNNAC | 3 cut(s) | 349, 666, 754 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 376 |
| Hpy188III | TCNNGA | 8 cut(s) | 236, 263, 411, 437, 489, 578, 638, 791 |
| Hpy8I | GTNNAC | 3 cut(s) | 349, 666, 754 |
| Hpy99I | CGWCG | 1 cut(s) | 83 |
| HpyAV | CCTTC | 3 cut(s) | 269, 495, 641 |
| HpyCH4IV | ACGT | 2 cut(s) | 81, 565 |
| HpyCH4V | TGCA | 5 cut(s) | 85, 106, 245, 599, 688 |
| HpyF3I | CTNAG | 4 cut(s) | 168, 477, 654, 972 |
| HpySE526I | ACGT | 2 cut(s) | 81, 565 |
| Hsp92I | GRCGYC | 1 cut(s) | 312 |
| Hsp92II | CATG | 4 cut(s) | 42, 371, 440, 449 |
| HspAI | GCGC | 4 cut(s) | 34, 206, 312, 731 |
| KasI | GGCGCC | 1 cut(s) | 311 |
| LmnI | GCTCC | 4 cut(s) | 413, 430, 564, 1000 |
| Lsp1109I | GCAGC | 9 cut(s) | 80, 283, 367, 442, 445, 672, 973, 994, 997 |
| LweI | GCATC | 2 cut(s) | 80, 608 |
| MaeI | CTAG | 6 cut(s) | 194, 203, 926, 938, 968, 1020 |
| MaeII | ACGT | 2 cut(s) | 81, 565 |
| MaeIII | GTNAC | 1 cut(s) | 892 |
| MbiI | CCGCTC | 3 cut(s) | 416, 643, 719 |
| MboII | GAAGA | 4 cut(s) | 149, 626, 686, 842 |
| MfeI | CAATTG | 2 cut(s) | 86, 881 |
| MhlI | GDGCHC | 2 cut(s) | 561, 613 |
| MluCI | AATT | 4 cut(s) | 86, 131, 216, 881 |
| Mly113I | GGCGCC | 1 cut(s) | 312 |
| MlyI | GAGTC | 2 cut(s) | 583, 700 |
| MmeI | TCCRAC | 1 cut(s) | 586 |
| MroXI | GAANNNNTTC | 1 cut(s) | 662 |
| MseI | TTAA | 1 cut(s) | 708 |
| MspI | CCGG | 4 cut(s) | 222, 272, 333, 404 |
| MspR9I | CCNGG | 9 cut(s) | 65, 222, 405, 550, 594, 607, 739, 749, 901 |
| MunI | CAATTG | 2 cut(s) | 86, 881 |
| MvaI | CCWGG | 7 cut(s) | 65, 550, 594, 607, 739, 749, 901 |
| MvnI | CGCG | 1 cut(s) | 510 |
| NarI | GGCGCC | 1 cut(s) | 312 |
| NciI | CCSGG | 2 cut(s) | 222, 405 |
| NcoI | CCATGG | 1 cut(s) | 38 |
| NheI | GCTAGC | 1 cut(s) | 202 |
| NlaIII | CATG | 4 cut(s) | 42, 371, 440, 449 |
| NsbI | TGCGCA | 1 cut(s) | 732 |
| PagI | TCATGA | 1 cut(s) | 436 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 666 |
| PdmI | GAANNNNTTC | 1 cut(s) | 662 |
| PfeI | GAWTC | 1 cut(s) | 43 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 64 |
| PleI | GAGTC | 2 cut(s) | 582, 699 |
| PluTI | GGCGCC | 1 cut(s) | 315 |
| PpsI | GAGTC | 2 cut(s) | 582, 699 |
| PpuMI | RGGWCCY | 1 cut(s) | 628 |
| PshBI | ATTAAT | 1 cut(s) | 708 |
| Psp5II | RGGWCCY | 1 cut(s) | 628 |
| Psp6I | CCWGG | 7 cut(s) | 63, 548, 592, 605, 737, 747, 899 |
| PspGI | CCWGG | 7 cut(s) | 63, 548, 592, 605, 737, 747, 899 |
| PspPI | GGNCC | 7 cut(s) | 91, 628, 645, 751, 763, 855, 976 |
| PspPPI | RGGWCCY | 1 cut(s) | 628 |
| PstI | CTGCAG | 1 cut(s) | 690 |
| RsaI | GTAC | 2 cut(s) | 306, 513 |
| RsaNI | GTAC | 2 cut(s) | 305, 512 |
| SaqAI | TTAA | 1 cut(s) | 708 |
| Sau96I | GGNCC | 7 cut(s) | 91, 628, 645, 751, 763, 855, 976 |
| ScaI | AGTACT | 1 cut(s) | 306 |
| SchI | GAGTC | 2 cut(s) | 583, 700 |
| ScrFI | CCNGG | 9 cut(s) | 65, 222, 405, 550, 594, 607, 739, 749, 901 |
| SduI | GDGCHC | 2 cut(s) | 561, 613 |
| SfaNI | GCATC | 2 cut(s) | 80, 608 |
| SfcI | CTRYAG | 1 cut(s) | 686 |
| SfoI | GGCGCC | 1 cut(s) | 313 |
| SinI | GGWCC | 5 cut(s) | 91, 628, 645, 751, 855 |
| SmlI | CTYRAG | 2 cut(s) | 234, 905 |
| SmoI | CTYRAG | 2 cut(s) | 234, 905 |
| Sse9I | AATT | 4 cut(s) | 86, 131, 216, 881 |
| SspDI | GGCGCC | 1 cut(s) | 311 |
| SspMI | CTAG | 6 cut(s) | 194, 203, 926, 938, 968, 1020 |
| StyD4I | CCNGG | 9 cut(s) | 63, 220, 403, 548, 592, 605, 737, 747, 899 |
| StyI | CCWWGG | 1 cut(s) | 38 |
| TaiI | ACGT | 2 cut(s) | 84, 568 |
| TaqI | TCGA | 3 cut(s) | 74, 399, 792 |
| TaqII | GACCGA | 2 cut(s) | 342, 843 |
| TasI | AATT | 4 cut(s) | 86, 131, 216, 881 |
| TatI | WGTACW | 1 cut(s) | 304 |
| TauI | GCSGC | 4 cut(s) | 185, 233, 278, 944 |
| TfiI | GAWTC | 1 cut(s) | 43 |
| Tru1I | TTAA | 1 cut(s) | 708 |
| Tru9I | TTAA | 1 cut(s) | 708 |
| TscAI | CASTG | 3 cut(s) | 108, 477, 658 |
| TseI | GCWGC | 9 cut(s) | 68, 296, 355, 455, 458, 685, 986, 1007, 1010 |
| TspDTI | ATGAA | 3 cut(s) | 407, 453, 726 |
| TspRI | CASTG | 3 cut(s) | 108, 477, 658 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 64 |
| VpaK11BI | GGWCC | 5 cut(s) | 91, 628, 645, 751, 855 |
| VspI | ATTAAT | 1 cut(s) | 708 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 971 |
| XmnI | GAANNNNTTC | 1 cut(s) | 662 |
| XspI | CTAG | 6 cut(s) | 194, 203, 926, 938, 968, 1020 |
| ZrmI | AGTACT | 1 cut(s) | 306 |