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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 285 |
| AccB1I | GGYRCC | 1 cut(s) | 285 |
| AccI | GTMKAC | 3 cut(s) | 217, 390, 788 |
| AccII | CGCG | 2 cut(s) | 166, 530 |
| AclWI | GGATC | 1 cut(s) | 735 |
| AcoI | YGGCCR | 3 cut(s) | 290, 420, 620 |
| AfaI | GTAC | 1 cut(s) | 287 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 237, 282, 400, 495 |
| AgeI | ACCGGT | 3 cut(s) | 385, 533, 798 |
| AgsI | TTSAA | 1 cut(s) | 760 |
| AhlI | ACTAGT | 1 cut(s) | 601 |
| AjnI | CCWGG | 2 cut(s) | 125, 549 |
| AluBI | AGCT | 5 cut(s) | 315, 340, 473, 722, 819 |
| AluI | AGCT | 5 cut(s) | 315, 340, 473, 722, 819 |
| Alw21I | GWGCWC | 1 cut(s) | 317 |
| Alw26I | GTCTC | 3 cut(s) | 107, 338, 709 |
| AlwI | GGATC | 1 cut(s) | 735 |
| Ama87I | CYCGRG | 1 cut(s) | 341 |
| AoxI | GGCC | 9 cut(s) | 54, 202, 264, 290, 420, 455, 504, 620, 729 |
| ApaI | GGGCCC | 1 cut(s) | 268 |
| ApeKI | GCWGC | 2 cut(s) | 470, 482 |
| AsiGI | ACCGGT | 3 cut(s) | 385, 533, 798 |
| Asp718I | GGTACC | 1 cut(s) | 285 |
| AspLEI | GCGC | 1 cut(s) | 308 |
| AspS9I | GGNCC | 6 cut(s) | 155, 240, 264, 265, 456, 730 |
| AsuC2I | CCSGG | 4 cut(s) | 67, 153, 349, 619 |
| AsuHPI | GGTGA | 4 cut(s) | 132, 369, 375, 828 |
| AvaI | CYCGRG | 1 cut(s) | 341 |
| AvaII | GGWCC | 2 cut(s) | 155, 240 |
| BaeGI | GKGCMC | 1 cut(s) | 268 |
| BalI | TGGCCA | 1 cut(s) | 422 |
| BanI | GGYRCC | 1 cut(s) | 285 |
| BanII | GRGCYC | 3 cut(s) | 268, 317, 410 |
| BauI | CACGAG | 1 cut(s) | 563 |
| Bbv12I | GWGCWC | 1 cut(s) | 317 |
| BbvI | GCAGC | 2 cut(s) | 482, 494 |
| BccI | CCATC | 4 cut(s) | 218, 301, 394, 403 |
| BceAI | ACGGC | 2 cut(s) | 74, 217 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 101, 135 |
| BciT130I | CCWGG | 2 cut(s) | 127, 551 |
| BcnI | CCSGG | 4 cut(s) | 67, 153, 349, 619 |
| BcoDI | GTCTC | 3 cut(s) | 107, 338, 709 |
| BcuI | ACTAGT | 1 cut(s) | 601 |
| BfaI | CTAG | 2 cut(s) | 602, 719 |
| BisI | GCNGC | 7 cut(s) | 57, 161, 164, 365, 471, 483, 644 |
| BlsI | GCNGC | 7 cut(s) | 58, 162, 165, 366, 472, 484, 645 |
| Bme1390I | CCNGG | 6 cut(s) | 67, 127, 153, 349, 551, 619 |
| Bme18I | GGWCC | 2 cut(s) | 155, 240 |
| BmeT110I | CYCGRG | 1 cut(s) | 341 |
| BmgT120I | GGNCC | 6 cut(s) | 155, 240, 264, 265, 456, 730 |
| BmiI | GGNNCC | 7 cut(s) | 72, 156, 265, 266, 267, 287, 803 |
| BmrFI | CCNGG | 6 cut(s) | 67, 127, 153, 349, 551, 619 |
| BmsI | GCATC | 1 cut(s) | 86 |
| BpuMI | CCSGG | 4 cut(s) | 67, 153, 349, 619 |
| Bsa29I | ATCGAT | 1 cut(s) | 398 |
| BsaAI | YACGTR | 1 cut(s) | 414 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaI | GGTCTC | 2 cut(s) | 107, 338 |
| BsaJI | CCNNGG | 3 cut(s) | 66, 494, 607 |
| BsaWI | WCCGGW | 4 cut(s) | 245, 385, 533, 798 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 240, 270 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 66, 67, 237, 282, 400, 495 |
| Bse118I | RCCGGY | 4 cut(s) | 288, 385, 533, 798 |
| Bse3DI | GCAATG | 1 cut(s) | 315 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseBI | CCWGG | 2 cut(s) | 127, 551 |
| BseCI | ATCGAT | 1 cut(s) | 398 |
| BseDI | CCNNGG | 3 cut(s) | 66, 494, 607 |
| BseGI | GGATG | 3 cut(s) | 95, 210, 293 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 237, 282, 400, 495 |
| BseMI | GCAATG | 1 cut(s) | 315 |
| BseSI | GKGCMC | 1 cut(s) | 268 |
| BseXI | GCAGC | 2 cut(s) | 482, 494 |
| BsgI | GTGCAG | 1 cut(s) | 564 |
| Bsh1236I | CGCG | 2 cut(s) | 166, 530 |
| Bsh1285I | CGRYCG | 5 cut(s) | 152, 468, 534, 641, 812 |
| BshFI | GGCC | 9 cut(s) | 56, 204, 266, 292, 422, 457, 506, 622, 731 |
| BshNI | GGYRCC | 1 cut(s) | 285 |
| BshTI | ACCGGT | 3 cut(s) | 385, 533, 798 |
| BshVI | ATCGAT | 1 cut(s) | 398 |
| BsiEI | CGRYCG | 5 cut(s) | 152, 468, 534, 641, 812 |
| BsiHKAI | GWGCWC | 1 cut(s) | 317 |
| BsiHKCI | CYCGRG | 1 cut(s) | 341 |
| BsiSI | CCGG | 9 cut(s) | 66, 152, 246, 289, 349, 386, 534, 619, 799 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 66, 67, 237, 282, 400, 495 |
| BsmAI | GTCTC | 3 cut(s) | 107, 338, 709 |
| BsmI | GAATGC | 1 cut(s) | 366 |
| BsnI | GGCC | 9 cut(s) | 56, 204, 266, 292, 422, 457, 506, 622, 731 |
| Bso31I | GGTCTC | 2 cut(s) | 107, 338 |
| BsoBI | CYCGRG | 1 cut(s) | 341 |
| Bsp120I | GGGCCC | 1 cut(s) | 264 |
| Bsp1286I | GDGCHC | 3 cut(s) | 268, 317, 410 |
| Bsp143I | GATC | 2 cut(s) | 465, 740 |
| BspANI | GGCC | 9 cut(s) | 56, 204, 266, 292, 422, 457, 506, 622, 731 |
| BspDI | ATCGAT | 1 cut(s) | 398 |
| BspFNI | CGCG | 2 cut(s) | 166, 530 |
| BspLI | GGNNCC | 7 cut(s) | 72, 156, 265, 266, 267, 287, 803 |
| BspPI | GGATC | 1 cut(s) | 735 |
| BspQI | GCTCTTC | 1 cut(s) | 326 |
| BspT107I | GGYRCC | 1 cut(s) | 285 |
| BspTNI | GGTCTC | 2 cut(s) | 107, 338 |
| BsrDI | GCAATG | 1 cut(s) | 315 |
| BsrFI | RCCGGY | 4 cut(s) | 288, 385, 533, 798 |
| BssAI | RCCGGY | 4 cut(s) | 288, 385, 533, 798 |
| BssECI | CCNNGG | 3 cut(s) | 66, 494, 607 |
| BssMI | GATC | 2 cut(s) | 465, 740 |
| BssSI | CACGAG | 1 cut(s) | 563 |
| BssT1I | CCWWGG | 1 cut(s) | 607 |
| Bst2BI | CACGAG | 1 cut(s) | 563 |
| Bst2UI | CCWGG | 2 cut(s) | 127, 551 |
| Bst4CI | ACNGT | 4 cut(s) | 381, 498, 639, 664 |
| Bst6I | CTCTTC | 1 cut(s) | 326 |
| BstBAI | YACGTR | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 4 cut(s) | 87, 338, 406, 504 |
| BstDSI | CCRYGG | 1 cut(s) | 494 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 235 |
| BstF5I | GGATG | 3 cut(s) | 95, 210, 293 |
| BstFNI | CGCG | 2 cut(s) | 166, 530 |
| BstHHI | GCGC | 1 cut(s) | 308 |
| BstKTI | GATC | 2 cut(s) | 468, 743 |
| BstMAI | GTCTC | 3 cut(s) | 107, 338, 709 |
| BstMBI | GATC | 2 cut(s) | 465, 740 |
| BstMCI | CGRYCG | 5 cut(s) | 152, 468, 534, 641, 812 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 272, 312, 414, 479, 728 |
| BstNI | CCWGG | 2 cut(s) | 127, 551 |
| BstSCI | CCNGG | 6 cut(s) | 65, 125, 151, 347, 549, 617 |
| BstSLI | GKGCMC | 1 cut(s) | 268 |
| BstUI | CGCG | 2 cut(s) | 166, 530 |
| BstV1I | GCAGC | 2 cut(s) | 482, 494 |
| BstX2I | RGATCY | 1 cut(s) | 740 |
| BstYI | RGATCY | 1 cut(s) | 740 |
| Bsu15I | ATCGAT | 1 cut(s) | 398 |
| BsuRI | GGCC | 9 cut(s) | 56, 204, 266, 292, 422, 457, 506, 622, 731 |
| BsuTUI | ATCGAT | 1 cut(s) | 398 |
| BtgI | CCRYGG | 1 cut(s) | 494 |
| BtsCI | GGATG | 3 cut(s) | 95, 210, 293 |
| Cac8I | GCNNGC | 4 cut(s) | 87, 338, 406, 504 |
| CfoI | GCGC | 1 cut(s) | 308 |
| Cfr10I | RCCGGY | 4 cut(s) | 288, 385, 533, 798 |
| Cfr13I | GGNCC | 6 cut(s) | 155, 240, 264, 265, 456, 730 |
| ClaI | ATCGAT | 1 cut(s) | 398 |
| CseI | GACGC | 1 cut(s) | 194 |
| Csp6I | GTAC | 1 cut(s) | 286 |
| CspAI | ACCGGT | 3 cut(s) | 385, 533, 798 |
| CviAII | CATG | 3 cut(s) | 144, 418, 702 |
| CviQI | GTAC | 1 cut(s) | 286 |
| DpnI | GATC | 2 cut(s) | 467, 742 |
| DpnII | GATC | 2 cut(s) | 465, 740 |
| EaeI | YGGCCR | 3 cut(s) | 290, 420, 620 |
| Eam1104I | CTCTTC | 1 cut(s) | 326 |
| EarI | CTCTTC | 1 cut(s) | 326 |
| EciI | GGCGGA | 3 cut(s) | 147, 216, 576 |
| Ecl136II | GAGCTC | 1 cut(s) | 315 |
| Eco130I | CCWWGG | 1 cut(s) | 607 |
| Eco24I | GRGCYC | 3 cut(s) | 268, 317, 410 |
| Eco31I | GGTCTC | 2 cut(s) | 107, 338 |
| Eco47I | GGWCC | 2 cut(s) | 155, 240 |
| Eco53kI | GAGCTC | 1 cut(s) | 315 |
| Eco88I | CYCGRG | 1 cut(s) | 341 |
| EcoICRI | GAGCTC | 1 cut(s) | 315 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 235 |
| EcoO109I | RGGNCCY | 2 cut(s) | 264, 265 |
| EcoRII | CCWGG | 2 cut(s) | 125, 549 |
| EcoT14I | CCWWGG | 1 cut(s) | 607 |
| EcoT38I | GRGCYC | 3 cut(s) | 268, 317, 410 |
| ErhI | CCWWGG | 1 cut(s) | 607 |
| FaeI | CATG | 3 cut(s) | 147, 421, 705 |
| FaiI | YATR | 7 cut(s) | 101, 145, 419, 525, 648, 703, 774 |
| FatI | CATG | 3 cut(s) | 143, 417, 701 |
| FblI | GTMKAC | 3 cut(s) | 217, 390, 788 |
| Fnu4HI | GCNGC | 7 cut(s) | 57, 161, 164, 365, 471, 483, 644 |
| FokI | GGATG | 3 cut(s) | 82, 197, 280 |
| FriOI | GRGCYC | 3 cut(s) | 268, 317, 410 |
| Fsp4HI | GCNGC | 7 cut(s) | 57, 161, 164, 365, 471, 483, 644 |
| FspBI | CTAG | 2 cut(s) | 602, 719 |
| GlaI | GCGC | 1 cut(s) | 307 |
| GluI | GCNGC | 7 cut(s) | 57, 161, 164, 365, 471, 483, 644 |
| HaeIII | GGCC | 9 cut(s) | 56, 204, 266, 292, 422, 457, 506, 622, 731 |
| HapII | CCGG | 9 cut(s) | 66, 152, 246, 289, 349, 386, 534, 619, 799 |
| HgaI | GACGC | 1 cut(s) | 194 |
| HhaI | GCGC | 1 cut(s) | 308 |
| Hin1II | CATG | 3 cut(s) | 147, 421, 705 |
| Hin6I | GCGC | 1 cut(s) | 306 |
| HinP1I | GCGC | 1 cut(s) | 306 |
| HincII | GTYRAC | 2 cut(s) | 218, 789 |
| HindII | GTYRAC | 2 cut(s) | 218, 789 |
| HinfI | GANTC | 2 cut(s) | 430, 756 |
| HpaII | CCGG | 9 cut(s) | 66, 152, 246, 289, 349, 386, 534, 619, 799 |
| HphI | GGTGA | 4 cut(s) | 132, 369, 375, 828 |
| Hpy166II | GTNNAC | 3 cut(s) | 218, 391, 789 |
| Hpy188I | TCNGA | 2 cut(s) | 112, 236 |
| Hpy188III | TCNNGA | 6 cut(s) | 179, 328, 343, 565, 714, 753 |
| Hpy8I | GTNNAC | 3 cut(s) | 218, 391, 789 |
| Hpy99I | CGWCG | 1 cut(s) | 219 |
| HpyAV | CCTTC | 3 cut(s) | 46, 231, 241 |
| HpyCH4III | ACNGT | 4 cut(s) | 381, 498, 639, 664 |
| HpyCH4IV | ACGT | 1 cut(s) | 413 |
| HpyCH4V | TGCA | 3 cut(s) | 417, 581, 705 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 272, 312, 414, 479, 728 |
| HpySE526I | ACGT | 1 cut(s) | 413 |
| Hsp92II | CATG | 3 cut(s) | 147, 421, 705 |
| HspAI | GCGC | 1 cut(s) | 306 |
| KpnI | GGTACC | 1 cut(s) | 289 |
| Kzo9I | GATC | 2 cut(s) | 465, 740 |
| LguI | GCTCTTC | 1 cut(s) | 326 |
| LmnI | GCTCC | 1 cut(s) | 478 |
| Lsp1109I | GCAGC | 2 cut(s) | 482, 494 |
| LweI | GCATC | 1 cut(s) | 86 |
| MaeI | CTAG | 2 cut(s) | 602, 719 |
| MaeII | ACGT | 1 cut(s) | 413 |
| MaeIII | GTNAC | 2 cut(s) | 381, 435 |
| MalI | GATC | 2 cut(s) | 467, 742 |
| MboI | GATC | 2 cut(s) | 465, 740 |
| MboII | GAAGA | 4 cut(s) | 28, 50, 343, 567 |
| MflI | RGATCY | 1 cut(s) | 740 |
| MhlI | GDGCHC | 3 cut(s) | 268, 317, 410 |
| MlsI | TGGCCA | 1 cut(s) | 422 |
| MluCI | AATT | 1 cut(s) | 424 |
| MluNI | TGGCCA | 1 cut(s) | 422 |
| MmeI | TCCRAC | 1 cut(s) | 337 |
| MnlI | CCTC | 5 cut(s) | 28, 206, 496, 594, 639 |
| Mox20I | TGGCCA | 1 cut(s) | 422 |
| MscI | TGGCCA | 1 cut(s) | 422 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| Msp20I | TGGCCA | 1 cut(s) | 422 |
| MspI | CCGG | 9 cut(s) | 66, 152, 246, 289, 349, 386, 534, 619, 799 |
| MspR9I | CCNGG | 6 cut(s) | 67, 127, 153, 349, 551, 619 |
| Mva1269I | GAATGC | 1 cut(s) | 366 |
| MvaI | CCWGG | 2 cut(s) | 127, 551 |
| MvnI | CGCG | 2 cut(s) | 166, 530 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 272, 312, 414, 479, 728 |
| NciI | CCSGG | 4 cut(s) | 67, 153, 349, 619 |
| NdeII | GATC | 2 cut(s) | 465, 740 |
| NlaIII | CATG | 3 cut(s) | 147, 421, 705 |
| NlaIV | GGNNCC | 7 cut(s) | 72, 156, 265, 266, 267, 287, 803 |
| NmuCI | GTSAC | 2 cut(s) | 381, 435 |
| PaeR7I | CTCGAG | 1 cut(s) | 341 |
| PciSI | GCTCTTC | 1 cut(s) | 326 |
| PctI | GAATGC | 1 cut(s) | 366 |
| PfeI | GAWTC | 2 cut(s) | 430, 756 |
| PflFI | GACNNNGTC | 1 cut(s) | 153 |
| PfoI | TCCNGGA | 2 cut(s) | 125, 549 |
| PinAI | ACCGGT | 3 cut(s) | 385, 533, 798 |
| PkrI | GCNGC | 7 cut(s) | 58, 162, 165, 366, 472, 484, 645 |
| Ple19I | CGATCG | 1 cut(s) | 468 |
| Ppu21I | YACGTR | 1 cut(s) | 414 |
| Psp124BI | GAGCTC | 1 cut(s) | 317 |
| Psp6I | CCWGG | 2 cut(s) | 125, 549 |
| PspGI | CCWGG | 2 cut(s) | 125, 549 |
| PspN4I | GGNNCC | 7 cut(s) | 72, 156, 265, 266, 267, 287, 803 |
| PspOMI | GGGCCC | 1 cut(s) | 264 |
| PspPI | GGNCC | 6 cut(s) | 155, 240, 264, 265, 456, 730 |
| PsuI | RGATCY | 1 cut(s) | 740 |
| PsyI | GACNNNGTC | 1 cut(s) | 153 |
| PvuI | CGATCG | 1 cut(s) | 468 |
| RsaI | GTAC | 1 cut(s) | 287 |
| RsaNI | GTAC | 1 cut(s) | 286 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| SacI | GAGCTC | 1 cut(s) | 317 |
| SalI | GTCGAC | 2 cut(s) | 216, 787 |
| SapI | GCTCTTC | 1 cut(s) | 326 |
| SatI | GCNGC | 7 cut(s) | 57, 161, 164, 365, 471, 483, 644 |
| Sau3AI | GATC | 2 cut(s) | 465, 740 |
| Sau96I | GGNCC | 6 cut(s) | 155, 240, 264, 265, 456, 730 |
| ScrFI | CCNGG | 6 cut(s) | 67, 127, 153, 349, 551, 619 |
| SduI | GDGCHC | 3 cut(s) | 268, 317, 410 |
| SetI | ASST | 9 cut(s) | 119, 317, 342, 416, 475, 586, 724, 821, 841 |
| SfaNI | GCATC | 1 cut(s) | 86 |
| Sfr274I | CTCGAG | 1 cut(s) | 341 |
| SinI | GGWCC | 2 cut(s) | 155, 240 |
| SlaI | CTCGAG | 1 cut(s) | 341 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| SmlI | CTYRAG | 1 cut(s) | 341 |
| SmoI | CTYRAG | 1 cut(s) | 341 |
| SpeI | ACTAGT | 1 cut(s) | 601 |
| Sse9I | AATT | 1 cut(s) | 424 |
| SspI | AATATT | 2 cut(s) | 372, 557 |
| SspMI | CTAG | 2 cut(s) | 602, 719 |
| SstI | GAGCTC | 1 cut(s) | 317 |
| StyD4I | CCNGG | 6 cut(s) | 65, 125, 151, 347, 549, 617 |
| StyI | CCWWGG | 1 cut(s) | 607 |
| TaaI | ACNGT | 4 cut(s) | 381, 498, 639, 664 |
| TaiI | ACGT | 1 cut(s) | 416 |
| TaqI | TCGA | 5 cut(s) | 217, 342, 398, 713, 788 |
| TaqII | GACCGA | 1 cut(s) | 826 |
| TasI | AATT | 1 cut(s) | 424 |
| TauI | GCSGC | 5 cut(s) | 59, 163, 166, 367, 646 |
| TfiI | GAWTC | 2 cut(s) | 430, 756 |
| TseFI | GTSAC | 2 cut(s) | 381, 435 |
| TseI | GCWGC | 2 cut(s) | 470, 482 |
| Tsp45I | GTSAC | 2 cut(s) | 381, 435 |
| TspDTI | ATGAA | 3 cut(s) | 84, 163, 561 |
| TspGWI | ACGGA | 3 cut(s) | 203, 423, 772 |
| Tth111I | GACNNNGTC | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 2 cut(s) | 155, 240 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 235 |
| XhoI | CTCGAG | 1 cut(s) | 341 |
| XmiI | GTMKAC | 3 cut(s) | 217, 390, 788 |
| XspI | CTAG | 2 cut(s) | 602, 719 |