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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 456 |
| AccBSI | CCGCTC | 1 cut(s) | 135 |
| AccII | CGCG | 4 cut(s) | 145, 179, 474, 533 |
| AclWI | GGATC | 1 cut(s) | 485 |
| AcoI | YGGCCR | 2 cut(s) | 70, 357 |
| AcyI | GRCGYC | 1 cut(s) | 594 |
| AfaI | GTAC | 2 cut(s) | 66, 206 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 144, 430 |
| AgsI | TTSAA | 1 cut(s) | 413 |
| AjnI | CCWGG | 2 cut(s) | 198, 427 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 405, 437 |
| AluBI | AGCT | 1 cut(s) | 123 |
| AluI | AGCT | 1 cut(s) | 123 |
| AlwI | GGATC | 1 cut(s) | 485 |
| AoxI | GGCC | 4 cut(s) | 70, 276, 289, 357 |
| ApeKI | GCWGC | 1 cut(s) | 120 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 79, 111 |
| AspLEI | GCGC | 2 cut(s) | 457, 535 |
| AspS9I | GGNCC | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 2 cut(s) | 184, 461 |
| BalI | TGGCCA | 1 cut(s) | 72 |
| BanII | GRGCYC | 1 cut(s) | 60 |
| BauI | CACGAG | 1 cut(s) | 269 |
| BbvI | GCAGC | 1 cut(s) | 132 |
| BccI | CCATC | 1 cut(s) | 356 |
| BceAI | ACGGC | 2 cut(s) | 67, 291 |
| BciT130I | CCWGG | 2 cut(s) | 200, 429 |
| BclI | TGATCA | 1 cut(s) | 384 |
| BfaI | CTAG | 2 cut(s) | 17, 252 |
| BisI | GCNGC | 4 cut(s) | 121, 133, 331, 504 |
| BlsI | GCNGC | 4 cut(s) | 122, 134, 332, 505 |
| BmcAI | AGTACT | 1 cut(s) | 206 |
| Bme1390I | CCNGG | 2 cut(s) | 200, 429 |
| BmgT120I | GGNCC | 1 cut(s) | 277 |
| BmiI | GGNNCC | 1 cut(s) | 422 |
| BmrFI | CCNGG | 2 cut(s) | 200, 429 |
| BmrI | ACTGGG | 1 cut(s) | 45 |
| BmsI | GCATC | 1 cut(s) | 15 |
| BmuI | ACTGGG | 1 cut(s) | 45 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 27 |
| BpmI | CTGGAG | 1 cut(s) | 221 |
| BpuEI | CTTGAG | 1 cut(s) | 394 |
| BsaAI | YACGTR | 2 cut(s) | 64, 68 |
| BsaHI | GRCGYC | 1 cut(s) | 594 |
| BsaJI | CCNNGG | 4 cut(s) | 143, 257, 428, 472 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 144, 430 |
| Bse1I | ACTGG | 2 cut(s) | 40, 212 |
| BseBI | CCWGG | 2 cut(s) | 200, 429 |
| BseDI | CCNNGG | 4 cut(s) | 143, 257, 428, 472 |
| BseGI | GGATG | 2 cut(s) | 21, 439 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 144, 430 |
| BseMII | CTCAG | 4 cut(s) | 178, 501, 529, 571 |
| BseNI | ACTGG | 2 cut(s) | 40, 212 |
| BseXI | GCAGC | 1 cut(s) | 132 |
| BsgI | GTGCAG | 1 cut(s) | 214 |
| Bsh1236I | CGCG | 4 cut(s) | 145, 179, 474, 533 |
| Bsh1285I | CGRYCG | 2 cut(s) | 118, 183 |
| BshFI | GGCC | 4 cut(s) | 72, 278, 291, 359 |
| BsiEI | CGRYCG | 2 cut(s) | 118, 183 |
| BsiWI | CGTACG | 1 cut(s) | 64 |
| BslFI | GGGAC | 1 cut(s) | 139 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 144, 430 |
| BsmFI | GGGAC | 1 cut(s) | 139 |
| BsnI | GGCC | 4 cut(s) | 72, 278, 291, 359 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| Bsp143I | GATC | 3 cut(s) | 384, 448, 477 |
| BspANI | GGCC | 4 cut(s) | 72, 278, 291, 359 |
| BspCNI | CTCAG | 4 cut(s) | 177, 500, 528, 570 |
| BspFNI | CGCG | 4 cut(s) | 145, 179, 474, 533 |
| BspLI | GGNNCC | 1 cut(s) | 422 |
| BspPI | GGATC | 1 cut(s) | 485 |
| BsrBI | CCGCTC | 1 cut(s) | 135 |
| BsrI | ACTGG | 2 cut(s) | 40, 212 |
| BssECI | CCNNGG | 4 cut(s) | 143, 257, 428, 472 |
| BssMI | GATC | 3 cut(s) | 384, 448, 477 |
| BssNI | GRCGYC | 1 cut(s) | 594 |
| BssSI | CACGAG | 1 cut(s) | 269 |
| BssT1I | CCWWGG | 1 cut(s) | 257 |
| Bst2BI | CACGAG | 1 cut(s) | 269 |
| Bst2UI | CCWGG | 2 cut(s) | 200, 429 |
| Bst4CI | ACNGT | 2 cut(s) | 296, 315 |
| Bst6I | CTCTTC | 1 cut(s) | 356 |
| BstACI | GRCGYC | 1 cut(s) | 594 |
| BstBAI | YACGTR | 2 cut(s) | 64, 68 |
| BstC8I | GCNNGC | 3 cut(s) | 56, 501, 550 |
| BstDEI | CTNAG | 4 cut(s) | 164, 487, 515, 557 |
| BstDSI | CCRYGG | 2 cut(s) | 143, 472 |
| BstEII | GGTNACC | 1 cut(s) | 39 |
| BstF5I | GGATG | 2 cut(s) | 21, 439 |
| BstFNI | CGCG | 4 cut(s) | 145, 179, 474, 533 |
| BstHHI | GCGC | 2 cut(s) | 457, 535 |
| BstKTI | GATC | 3 cut(s) | 387, 451, 480 |
| BstMBI | GATC | 3 cut(s) | 384, 448, 477 |
| BstMCI | CGRYCG | 2 cut(s) | 118, 183 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 129, 461 |
| BstNI | CCWGG | 2 cut(s) | 200, 429 |
| BstPI | GGTNACC | 1 cut(s) | 39 |
| BstSCI | CCNGG | 2 cut(s) | 198, 427 |
| BstSNI | TACGTA | 1 cut(s) | 64 |
| BstUI | CGCG | 4 cut(s) | 145, 179, 474, 533 |
| BstV1I | GCAGC | 1 cut(s) | 132 |
| BstX2I | RGATCY | 1 cut(s) | 477 |
| BstYI | RGATCY | 1 cut(s) | 477 |
| BsuRI | GGCC | 4 cut(s) | 72, 278, 291, 359 |
| BtgI | CCRYGG | 2 cut(s) | 143, 472 |
| BtsCI | GGATG | 2 cut(s) | 21, 439 |
| Cac8I | GCNNGC | 3 cut(s) | 56, 501, 550 |
| CfoI | GCGC | 2 cut(s) | 457, 535 |
| Cfr13I | GGNCC | 1 cut(s) | 277 |
| Cfr42I | CCGCGG | 2 cut(s) | 146, 475 |
| Csp6I | GTAC | 2 cut(s) | 65, 205 |
| CviAII | CATG | 1 cut(s) | 416 |
| CviQI | GTAC | 2 cut(s) | 65, 205 |
| DdeI | CTNAG | 4 cut(s) | 164, 487, 515, 557 |
| DpnI | GATC | 3 cut(s) | 386, 450, 479 |
| DpnII | GATC | 3 cut(s) | 384, 448, 477 |
| EaeI | YGGCCR | 2 cut(s) | 70, 357 |
| Eam1104I | CTCTTC | 1 cut(s) | 356 |
| EarI | CTCTTC | 1 cut(s) | 356 |
| EciI | GGCGGA | 2 cut(s) | 226, 317 |
| Eco105I | TACGTA | 1 cut(s) | 64 |
| Eco130I | CCWWGG | 1 cut(s) | 257 |
| Eco24I | GRGCYC | 1 cut(s) | 60 |
| Eco91I | GGTNACC | 1 cut(s) | 39 |
| EcoO65I | GGTNACC | 1 cut(s) | 39 |
| EcoRII | CCWGG | 2 cut(s) | 198, 427 |
| EcoT14I | CCWWGG | 1 cut(s) | 257 |
| EcoT38I | GRGCYC | 1 cut(s) | 60 |
| ErhI | CCWWGG | 1 cut(s) | 257 |
| FaeI | CATG | 1 cut(s) | 419 |
| FaiI | YATR | 5 cut(s) | 129, 174, 417, 444, 522 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 209, 241 |
| FaqI | GGGAC | 1 cut(s) | 139 |
| FatI | CATG | 1 cut(s) | 415 |
| FauI | CCCGC | 2 cut(s) | 150, 467 |
| FbaI | TGATCA | 1 cut(s) | 384 |
| Fnu4HI | GCNGC | 4 cut(s) | 121, 133, 331, 504 |
| FokI | GGATG | 2 cut(s) | 8, 446 |
| FriOI | GRGCYC | 1 cut(s) | 60 |
| Fsp4HI | GCNGC | 4 cut(s) | 121, 133, 331, 504 |
| FspAI | RTGCGCAY | 1 cut(s) | 456 |
| FspBI | CTAG | 2 cut(s) | 17, 252 |
| FspI | TGCGCA | 1 cut(s) | 456 |
| GlaI | GCGC | 2 cut(s) | 456, 534 |
| GluI | GCNGC | 4 cut(s) | 121, 133, 331, 504 |
| GsuI | CTGGAG | 1 cut(s) | 221 |
| HaeIII | GGCC | 4 cut(s) | 72, 278, 291, 359 |
| HhaI | GCGC | 2 cut(s) | 457, 535 |
| Hin1I | GRCGYC | 1 cut(s) | 594 |
| Hin1II | CATG | 1 cut(s) | 419 |
| Hin6I | GCGC | 2 cut(s) | 455, 533 |
| HinP1I | GCGC | 2 cut(s) | 455, 533 |
| HinfI | GANTC | 4 cut(s) | 80, 189, 396, 565 |
| HphI | GGTGA | 2 cut(s) | 184, 461 |
| Hpy188I | TCNGA | 2 cut(s) | 167, 490 |
| Hpy188III | TCNNGA | 2 cut(s) | 28, 271 |
| HpyAV | CCTTC | 3 cut(s) | 179, 205, 434 |
| HpyCH4III | ACNGT | 2 cut(s) | 296, 315 |
| HpyCH4IV | ACGT | 2 cut(s) | 63, 67 |
| HpyCH4V | TGCA | 2 cut(s) | 216, 231 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 129, 461 |
| HpyF3I | CTNAG | 4 cut(s) | 164, 487, 515, 557 |
| HpySE526I | ACGT | 2 cut(s) | 63, 67 |
| Hsp92I | GRCGYC | 1 cut(s) | 594 |
| Hsp92II | CATG | 1 cut(s) | 419 |
| HspAI | GCGC | 2 cut(s) | 455, 533 |
| Ksp22I | TGATCA | 1 cut(s) | 384 |
| KspI | CCGCGG | 2 cut(s) | 146, 475 |
| Kzo9I | GATC | 3 cut(s) | 384, 448, 477 |
| LmnI | GCTCC | 1 cut(s) | 140 |
| LpnPI | CCDG | 8 cut(s) | 21, 185, 193, 212, 414, 441, 496, 544 |
| Lsp1109I | GCAGC | 1 cut(s) | 132 |
| LweI | GCATC | 1 cut(s) | 15 |
| MaeI | CTAG | 2 cut(s) | 17, 252 |
| MaeII | ACGT | 2 cut(s) | 63, 67 |
| MaeIII | GTNAC | 3 cut(s) | 39, 85, 271 |
| MalI | GATC | 3 cut(s) | 386, 450, 479 |
| MbiI | CCGCTC | 1 cut(s) | 135 |
| MboI | GATC | 3 cut(s) | 384, 448, 477 |
| MboII | GAAGA | 4 cut(s) | 217, 316, 343, 521 |
| MflI | RGATCY | 1 cut(s) | 477 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MlsI | TGGCCA | 1 cut(s) | 72 |
| MluCI | AATT | 2 cut(s) | 74, 439 |
| MluNI | TGGCCA | 1 cut(s) | 72 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MmeI | TCCRAC | 1 cut(s) | 364 |
| MnlI | CCTC | 8 cut(s) | 35, 173, 244, 290, 347, 369, 414, 596 |
| Mox20I | TGGCCA | 1 cut(s) | 72 |
| MscI | TGGCCA | 1 cut(s) | 72 |
| MseI | TTAA | 1 cut(s) | 438 |
| Msp20I | TGGCCA | 1 cut(s) | 72 |
| MspA1I | CMGCKG | 2 cut(s) | 145, 474 |
| MspR9I | CCNGG | 2 cut(s) | 200, 429 |
| MvaI | CCWGG | 2 cut(s) | 200, 429 |
| MvnI | CGCG | 4 cut(s) | 145, 179, 474, 533 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 129, 461 |
| NdeII | GATC | 3 cut(s) | 384, 448, 477 |
| NlaIII | CATG | 1 cut(s) | 419 |
| NlaIV | GGNNCC | 1 cut(s) | 422 |
| NmuCI | GTSAC | 2 cut(s) | 85, 271 |
| NsbI | TGCGCA | 1 cut(s) | 456 |
| PfeI | GAWTC | 3 cut(s) | 189, 396, 565 |
| Pfl23II | CGTACG | 1 cut(s) | 64 |
| PfoI | TCCNGGA | 1 cut(s) | 198 |
| PkrI | GCNGC | 4 cut(s) | 122, 134, 332, 505 |
| PleI | GAGTC | 1 cut(s) | 74 |
| PpsI | GAGTC | 1 cut(s) | 74 |
| Ppu21I | YACGTR | 2 cut(s) | 64, 68 |
| Psp6I | CCWGG | 2 cut(s) | 198, 427 |
| PspEI | GGTNACC | 1 cut(s) | 39 |
| PspGI | CCWGG | 2 cut(s) | 198, 427 |
| PspLI | CGTACG | 1 cut(s) | 64 |
| PspN4I | GGNNCC | 1 cut(s) | 422 |
| PspPI | GGNCC | 1 cut(s) | 277 |
| PsuI | RGATCY | 1 cut(s) | 477 |
| RsaI | GTAC | 2 cut(s) | 66, 206 |
| RsaNI | GTAC | 2 cut(s) | 65, 205 |
| SacII | CCGCGG | 2 cut(s) | 146, 475 |
| SaqAI | TTAA | 1 cut(s) | 438 |
| SatI | GCNGC | 4 cut(s) | 121, 133, 331, 504 |
| Sau3AI | GATC | 3 cut(s) | 384, 448, 477 |
| Sau96I | GGNCC | 1 cut(s) | 277 |
| ScaI | AGTACT | 1 cut(s) | 206 |
| SchI | GAGTC | 1 cut(s) | 74 |
| ScrFI | CCNGG | 2 cut(s) | 200, 429 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SfaNI | GCATC | 1 cut(s) | 15 |
| Sfr303I | CCGCGG | 2 cut(s) | 146, 475 |
| SgrBI | CCGCGG | 2 cut(s) | 146, 475 |
| SmlI | CTYRAG | 1 cut(s) | 373 |
| SmoI | CTYRAG | 1 cut(s) | 373 |
| SnaBI | TACGTA | 1 cut(s) | 64 |
| Sse9I | AATT | 2 cut(s) | 74, 439 |
| SspMI | CTAG | 2 cut(s) | 17, 252 |
| StyD4I | CCNGG | 2 cut(s) | 198, 427 |
| StyI | CCWWGG | 1 cut(s) | 257 |
| TaaI | ACNGT | 2 cut(s) | 296, 315 |
| TaiI | ACGT | 2 cut(s) | 66, 70 |
| TaqII | GACCGA | 1 cut(s) | 197 |
| TasI | AATT | 2 cut(s) | 74, 439 |
| TatI | WGTACW | 1 cut(s) | 204 |
| TauI | GCSGC | 3 cut(s) | 135, 333, 506 |
| TfiI | GAWTC | 3 cut(s) | 189, 396, 565 |
| Tru1I | TTAA | 1 cut(s) | 438 |
| Tru9I | TTAA | 1 cut(s) | 438 |
| TseFI | GTSAC | 2 cut(s) | 85, 271 |
| TseI | GCWGC | 1 cut(s) | 120 |
| Tsp45I | GTSAC | 2 cut(s) | 85, 271 |
| TspDTI | ATGAA | 2 cut(s) | 211, 537 |
| XspI | CTAG | 2 cut(s) | 17, 252 |
| ZrmI | AGTACT | 1 cut(s) | 206 |