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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 396 |
| Acc36I | ACCTGC | 1 cut(s) | 238 |
| AccB1I | GGYRCC | 1 cut(s) | 511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 317 |
| AccBSI | CCGCTC | 1 cut(s) | 628 |
| AccII | CGCG | 4 cut(s) | 245, 327, 645, 1127 |
| AciI | CCGC | 8 cut(s) | 218, 243, 474, 626, 798, 842, 929, 1400 |
| AclWI | GGATC | 2 cut(s) | 683, 1101 |
| AcoI | YGGCCR | 4 cut(s) | 345, 352, 795, 1299 |
| AcuI | CTGAAG | 4 cut(s) | 84, 909, 1077, 1259 |
| AcyI | GRCGYC | 3 cut(s) | 393, 512, 983 |
| AfaI | GTAC | 5 cut(s) | 71, 309, 576, 663, 1216 |
| AgsI | TTSAA | 1 cut(s) | 584 |
| AjiI | CACGTC | 1 cut(s) | 847 |
| AjnI | CCWGG | 8 cut(s) | 264, 354, 507, 1039, 1139, 1209, 1301, 1421 |
| AluBI | AGCT | 3 cut(s) | 458, 600, 1415 |
| AluI | AGCT | 3 cut(s) | 458, 600, 1415 |
| Alw26I | GTCTC | 1 cut(s) | 97 |
| AlwI | GGATC | 2 cut(s) | 683, 1101 |
| Ama87I | CYCGRG | 1 cut(s) | 923 |
| AoxI | GGCC | 8 cut(s) | 345, 352, 357, 795, 1137, 1278, 1299, 1370 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1171, 1203 |
| AspA2I | CCTAGG | 1 cut(s) | 1373 |
| AspLEI | GCGC | 7 cut(s) | 211, 329, 514, 818, 934, 1135, 1356 |
| AspS9I | GGNCC | 3 cut(s) | 262, 1257, 1279 |
| AsuC2I | CCSGG | 3 cut(s) | 260, 361, 632 |
| AsuHPI | GGTGA | 1 cut(s) | 1217 |
| AvaI | CYCGRG | 1 cut(s) | 923 |
| AvaII | GGWCC | 2 cut(s) | 262, 1257 |
| AvrII | CCTAGG | 1 cut(s) | 1373 |
| AxyI | CCTNAGG | 1 cut(s) | 606 |
| BalI | TGGCCA | 1 cut(s) | 354 |
| BanI | GGYRCC | 1 cut(s) | 511 |
| BanII | GRGCYC | 1 cut(s) | 291 |
| BbsI | GAAGAC | 1 cut(s) | 405 |
| BccI | CCATC | 4 cut(s) | 146, 551, 830, 1257 |
| BceAI | ACGGC | 2 cut(s) | 785, 1314 |
| BciT130I | CCWGG | 8 cut(s) | 266, 356, 509, 1041, 1141, 1211, 1303, 1423 |
| BcnI | CCSGG | 3 cut(s) | 260, 361, 632 |
| BcoDI | GTCTC | 1 cut(s) | 97 |
| BfaI | CTAG | 2 cut(s) | 572, 1374 |
| BfmI | CTRYAG | 2 cut(s) | 657, 777 |
| BfoI | RGCGCY | 3 cut(s) | 515, 935, 1357 |
| BfuAI | ACCTGC | 1 cut(s) | 238 |
| BglII | AGATCT | 1 cut(s) | 1270 |
| BisI | GCNGC | 3 cut(s) | 798, 930, 1400 |
| BlnI | CCTAGG | 1 cut(s) | 1373 |
| BlpI | GCTNAGC | 1 cut(s) | 912 |
| BlsI | GCNGC | 3 cut(s) | 799, 931, 1401 |
| BmcAI | AGTACT | 1 cut(s) | 663 |
| Bme18I | GGWCC | 2 cut(s) | 262, 1257 |
| BmeT110I | CYCGRG | 1 cut(s) | 923 |
| BmgBI | CACGTC | 1 cut(s) | 847 |
| BmgT120I | GGNCC | 3 cut(s) | 262, 1257, 1279 |
| BmiI | GGNNCC | 6 cut(s) | 387, 513, 945, 957, 1048, 1259 |
| BmrI | ACTGGG | 2 cut(s) | 37, 1057 |
| BmsI | GCATC | 4 cut(s) | 157, 478, 862, 1398 |
| BmuI | ACTGGG | 2 cut(s) | 37, 1057 |
| BpiI | GAAGAC | 1 cut(s) | 405 |
| BpmI | CTGGAG | 1 cut(s) | 1062 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 912 |
| BpuEI | CTTGAG | 4 cut(s) | 767, 971, 1346, 1349 |
| BpuMI | CCSGG | 3 cut(s) | 260, 361, 632 |
| Bsa29I | ATCGAT | 2 cut(s) | 1077, 1194 |
| BsaBI | GATNNNNATC | 1 cut(s) | 278 |
| BsaHI | GRCGYC | 3 cut(s) | 393, 512, 983 |
| BsaJI | CCNNGG | 4 cut(s) | 507, 669, 1210, 1373 |
| BsaWI | WCCGGW | 1 cut(s) | 1090 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 325, 355, 888, 918, 1080, 1110 |
| Bse1I | ACTGG | 9 cut(s) | 15, 32, 355, 523, 578, 698, 1008, 1063, 1373 |
| Bse21I | CCTNAGG | 1 cut(s) | 606 |
| Bse8I | GATNNNNATC | 1 cut(s) | 278 |
| BseBI | CCWGG | 8 cut(s) | 266, 356, 509, 1041, 1141, 1211, 1303, 1423 |
| BseCI | ATCGAT | 2 cut(s) | 1077, 1194 |
| BseDI | CCNNGG | 4 cut(s) | 507, 669, 1210, 1373 |
| BseGI | GGATG | 3 cut(s) | 124, 470, 1431 |
| BseJI | GATNNNNATC | 1 cut(s) | 278 |
| BseMII | CTCAG | 3 cut(s) | 143, 597, 903 |
| BseNI | ACTGG | 9 cut(s) | 15, 32, 355, 523, 578, 698, 1008, 1063, 1373 |
| BseRI | GAGGAG | 4 cut(s) | 394, 956, 1026, 1059 |
| BseYI | CCCAGC | 3 cut(s) | 105, 269, 458 |
| Bsh1236I | CGCG | 4 cut(s) | 245, 327, 645, 1127 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1194 |
| BshFI | GGCC | 8 cut(s) | 347, 354, 359, 797, 1139, 1280, 1301, 1372 |
| BshNI | GGYRCC | 1 cut(s) | 511 |
| BshVI | ATCGAT | 2 cut(s) | 1077, 1194 |
| BsiEI | CGRYCG | 1 cut(s) | 1194 |
| BsiHKCI | CYCGRG | 1 cut(s) | 923 |
| BsiSI | CCGG | 6 cut(s) | 260, 344, 360, 632, 705, 1091 |
| BslFI | GGGAC | 4 cut(s) | 44, 123, 851, 1150 |
| BsmAI | GTCTC | 1 cut(s) | 97 |
| BsmFI | GGGAC | 4 cut(s) | 44, 123, 851, 1150 |
| BsmI | GAATGC | 1 cut(s) | 913 |
| BsnI | GGCC | 8 cut(s) | 347, 354, 359, 797, 1139, 1280, 1301, 1372 |
| BsoBI | CYCGRG | 1 cut(s) | 923 |
| Bsp1286I | GDGCHC | 1 cut(s) | 291 |
| Bsp143I | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 912 |
| Bsp19I | CCATGG | 1 cut(s) | 669 |
| Bsp68I | TCGCGA | 2 cut(s) | 645, 1127 |
| BspACI | CCGC | 8 cut(s) | 218, 243, 474, 626, 798, 842, 929, 1400 |
| BspANI | GGCC | 8 cut(s) | 347, 354, 359, 797, 1139, 1280, 1301, 1372 |
| BspCNI | CTCAG | 3 cut(s) | 144, 598, 904 |
| BspDI | ATCGAT | 2 cut(s) | 1077, 1194 |
| BspFNI | CGCG | 4 cut(s) | 245, 327, 645, 1127 |
| BspLI | GGNNCC | 6 cut(s) | 387, 513, 945, 957, 1048, 1259 |
| BspMAI | CTGCAG | 1 cut(s) | 661 |
| BspMI | ACCTGC | 1 cut(s) | 238 |
| BspPI | GGATC | 2 cut(s) | 683, 1101 |
| BspT107I | GGYRCC | 1 cut(s) | 511 |
| BsrBI | CCGCTC | 1 cut(s) | 628 |
| BsrI | ACTGG | 9 cut(s) | 15, 32, 355, 523, 578, 698, 1008, 1063, 1373 |
| BssECI | CCNNGG | 4 cut(s) | 507, 669, 1210, 1373 |
| BssMI | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| BssNI | GRCGYC | 3 cut(s) | 393, 512, 983 |
| BssT1I | CCWWGG | 2 cut(s) | 669, 1373 |
| Bst2UI | CCWGG | 8 cut(s) | 266, 356, 509, 1041, 1141, 1211, 1303, 1423 |
| Bst4CI | ACNGT | 2 cut(s) | 433, 1291 |
| Bst6I | CTCTTC | 2 cut(s) | 60, 412 |
| BstACI | GRCGYC | 3 cut(s) | 393, 512, 983 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 824 |
| BstDEI | CTNAG | 6 cut(s) | 152, 177, 606, 912, 1201, 1253 |
| BstDSI | CCRYGG | 1 cut(s) | 669 |
| BstEII | GGTNACC | 1 cut(s) | 1205 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 891, 1041, 1348 |
| BstF5I | GGATG | 3 cut(s) | 124, 470, 1431 |
| BstFNI | CGCG | 4 cut(s) | 245, 327, 645, 1127 |
| BstH2I | RGCGCY | 3 cut(s) | 515, 935, 1357 |
| BstHHI | GCGC | 7 cut(s) | 211, 329, 514, 818, 934, 1135, 1356 |
| BstKTI | GATC | 6 cut(s) | 19, 691, 1081, 1096, 1194, 1273 |
| BstMAI | GTCTC | 1 cut(s) | 97 |
| BstMBI | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| BstMCI | CGRYCG | 1 cut(s) | 1194 |
| BstNI | CCWGG | 8 cut(s) | 266, 356, 509, 1041, 1141, 1211, 1303, 1423 |
| BstPI | GGTNACC | 1 cut(s) | 1205 |
| BstSFI | CTRYAG | 2 cut(s) | 657, 777 |
| BstUI | CGCG | 4 cut(s) | 245, 327, 645, 1127 |
| BstV2I | GAAGAC | 1 cut(s) | 405 |
| BstX2I | RGATCY | 2 cut(s) | 1093, 1270 |
| BstYI | RGATCY | 2 cut(s) | 1093, 1270 |
| Bsu15I | ATCGAT | 2 cut(s) | 1077, 1194 |
| Bsu36I | CCTNAGG | 1 cut(s) | 606 |
| BsuRI | GGCC | 8 cut(s) | 347, 354, 359, 797, 1139, 1280, 1301, 1372 |
| BsuTUI | ATCGAT | 2 cut(s) | 1077, 1194 |
| BtgI | CCRYGG | 1 cut(s) | 669 |
| BtrI | CACGTC | 1 cut(s) | 847 |
| BtsCI | GGATG | 3 cut(s) | 124, 470, 1431 |
| BtsI | GCAGTG | 1 cut(s) | 549 |
| BtsIMutI | CAGTG | 3 cut(s) | 8, 348, 549 |
| BtuMI | TCGCGA | 2 cut(s) | 645, 1127 |
| BveI | ACCTGC | 1 cut(s) | 238 |
| CfoI | GCGC | 7 cut(s) | 211, 329, 514, 818, 934, 1135, 1356 |
| Cfr13I | GGNCC | 3 cut(s) | 262, 1257, 1279 |
| ClaI | ATCGAT | 2 cut(s) | 1077, 1194 |
| CseI | GACGC | 3 cut(s) | 480, 991, 1243 |
| Csp6I | GTAC | 5 cut(s) | 70, 308, 575, 662, 1215 |
| CviAII | CATG | 2 cut(s) | 670, 1313 |
| CviQI | GTAC | 5 cut(s) | 70, 308, 575, 662, 1215 |
| DdeI | CTNAG | 6 cut(s) | 152, 177, 606, 912, 1201, 1253 |
| DinI | GGCGCC | 1 cut(s) | 513 |
| DpnI | GATC | 6 cut(s) | 18, 690, 1080, 1095, 1193, 1272 |
| DpnII | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| EaeI | YGGCCR | 4 cut(s) | 345, 352, 795, 1299 |
| Eam1104I | CTCTTC | 2 cut(s) | 60, 412 |
| EarI | CTCTTC | 2 cut(s) | 60, 412 |
| Eco130I | CCWWGG | 2 cut(s) | 669, 1373 |
| Eco24I | GRGCYC | 1 cut(s) | 291 |
| Eco32I | GATATC | 1 cut(s) | 158 |
| Eco47I | GGWCC | 2 cut(s) | 262, 1257 |
| Eco57I | CTGAAG | 4 cut(s) | 84, 909, 1077, 1259 |
| Eco81I | CCTNAGG | 1 cut(s) | 606 |
| Eco88I | CYCGRG | 1 cut(s) | 923 |
| Eco91I | GGTNACC | 1 cut(s) | 1205 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 891, 1041, 1348 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1257 |
| EcoO65I | GGTNACC | 1 cut(s) | 1205 |
| EcoRII | CCWGG | 8 cut(s) | 264, 354, 507, 1039, 1139, 1209, 1301, 1421 |
| EcoRV | GATATC | 1 cut(s) | 158 |
| EcoT14I | CCWWGG | 2 cut(s) | 669, 1373 |
| EcoT38I | GRGCYC | 1 cut(s) | 291 |
| EgeI | GGCGCC | 1 cut(s) | 513 |
| EheI | GGCGCC | 1 cut(s) | 513 |
| ErhI | CCWWGG | 2 cut(s) | 669, 1373 |
| FaeI | CATG | 2 cut(s) | 673, 1316 |
| FaiI | YATR | 6 cut(s) | 560, 671, 779, 1022, 1074, 1314 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 669, 701, 1311, 1343 |
| FaqI | GGGAC | 4 cut(s) | 44, 123, 851, 1150 |
| FatI | CATG | 2 cut(s) | 669, 1312 |
| FauI | CCCGC | 2 cut(s) | 225, 250 |
| Fnu4HI | GCNGC | 3 cut(s) | 798, 930, 1400 |
| FokI | GGATG | 3 cut(s) | 131, 457, 1438 |
| FriOI | GRGCYC | 1 cut(s) | 291 |
| Fsp4HI | GCNGC | 3 cut(s) | 798, 930, 1400 |
| FspBI | CTAG | 2 cut(s) | 572, 1374 |
| GlaI | GCGC | 7 cut(s) | 210, 328, 513, 817, 933, 1134, 1355 |
| GluI | GCNGC | 3 cut(s) | 798, 930, 1400 |
| GsaI | CCCAGC | 3 cut(s) | 109, 273, 462 |
| GsuI | CTGGAG | 1 cut(s) | 1062 |
| HaeII | RGCGCY | 3 cut(s) | 515, 935, 1357 |
| HaeIII | GGCC | 8 cut(s) | 347, 354, 359, 797, 1139, 1280, 1301, 1372 |
| HapII | CCGG | 6 cut(s) | 260, 344, 360, 632, 705, 1091 |
| HgaI | GACGC | 3 cut(s) | 480, 991, 1243 |
| HhaI | GCGC | 7 cut(s) | 211, 329, 514, 818, 934, 1135, 1356 |
| Hin1I | GRCGYC | 3 cut(s) | 393, 512, 983 |
| Hin1II | CATG | 2 cut(s) | 673, 1316 |
| Hin6I | GCGC | 7 cut(s) | 209, 327, 512, 816, 932, 1133, 1354 |
| HinP1I | GCGC | 7 cut(s) | 209, 327, 512, 816, 932, 1133, 1354 |
| HincII | GTYRAC | 1 cut(s) | 100 |
| HindII | GTYRAC | 1 cut(s) | 100 |
| HinfI | GANTC | 4 cut(s) | 401, 694, 766, 1033 |
| HpaII | CCGG | 6 cut(s) | 260, 344, 360, 632, 705, 1091 |
| HphI | GGTGA | 1 cut(s) | 1217 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 308, 447 |
| Hpy188I | TCNGA | 4 cut(s) | 88, 412, 693, 981 |
| Hpy188III | TCNNGA | 7 cut(s) | 644, 719, 761, 857, 950, 1126, 1363 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 308, 447 |
| Hpy99I | CGWCG | 4 cut(s) | 395, 398, 596, 941 |
| HpyAV | CCTTC | 5 cut(s) | 324, 364, 458, 1005, 1111 |
| HpyCH4III | ACNGT | 2 cut(s) | 433, 1291 |
| HpyCH4IV | ACGT | 2 cut(s) | 393, 846 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 554, 562, 659 |
| HpyF3I | CTNAG | 6 cut(s) | 152, 177, 606, 912, 1201, 1253 |
| HpySE526I | ACGT | 2 cut(s) | 393, 846 |
| Hsp92I | GRCGYC | 3 cut(s) | 393, 512, 983 |
| Hsp92II | CATG | 2 cut(s) | 673, 1316 |
| HspAI | GCGC | 7 cut(s) | 209, 327, 512, 816, 932, 1133, 1354 |
| KasI | GGCGCC | 1 cut(s) | 511 |
| Kzo9I | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| LmnI | GCTCC | 5 cut(s) | 238, 633, 943, 961, 1046 |
| LweI | GCATC | 4 cut(s) | 157, 478, 862, 1398 |
| MaeI | CTAG | 2 cut(s) | 572, 1374 |
| MaeII | ACGT | 2 cut(s) | 393, 846 |
| MaeIII | GTNAC | 6 cut(s) | 331, 379, 679, 1030, 1205, 1294 |
| MalI | GATC | 6 cut(s) | 18, 690, 1080, 1095, 1193, 1272 |
| MbiI | CCGCTC | 1 cut(s) | 628 |
| MboI | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| MboII | GAAGA | 6 cut(s) | 77, 399, 410, 497, 794, 1265 |
| MflI | RGATCY | 2 cut(s) | 1093, 1270 |
| MhlI | GDGCHC | 1 cut(s) | 291 |
| MlsI | TGGCCA | 1 cut(s) | 354 |
| MluCI | AATT | 2 cut(s) | 738, 1283 |
| MluNI | TGGCCA | 1 cut(s) | 354 |
| Mly113I | GGCGCC | 1 cut(s) | 512 |
| MlyI | GAGTC | 2 cut(s) | 395, 1027 |
| Mox20I | TGGCCA | 1 cut(s) | 354 |
| MscI | TGGCCA | 1 cut(s) | 354 |
| MseI | TTAA | 1 cut(s) | 1286 |
| Msp20I | TGGCCA | 1 cut(s) | 354 |
| MspA1I | CMGCKG | 1 cut(s) | 476 |
| MspI | CCGG | 6 cut(s) | 260, 344, 360, 632, 705, 1091 |
| Mva1269I | GAATGC | 1 cut(s) | 913 |
| MvaI | CCWGG | 8 cut(s) | 266, 356, 509, 1041, 1141, 1211, 1303, 1423 |
| MvnI | CGCG | 4 cut(s) | 245, 327, 645, 1127 |
| NarI | GGCGCC | 1 cut(s) | 512 |
| NciI | CCSGG | 3 cut(s) | 260, 361, 632 |
| NcoI | CCATGG | 1 cut(s) | 669 |
| NdeII | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| NlaIII | CATG | 2 cut(s) | 673, 1316 |
| NlaIV | GGNNCC | 6 cut(s) | 387, 513, 945, 957, 1048, 1259 |
| NmuCI | GTSAC | 4 cut(s) | 379, 1030, 1205, 1294 |
| NruI | TCGCGA | 2 cut(s) | 645, 1127 |
| PaeR7I | CTCGAG | 1 cut(s) | 923 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 689, 1187 |
| PctI | GAATGC | 1 cut(s) | 913 |
| PfeI | GAWTC | 2 cut(s) | 694, 766 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 317 |
| PfoI | TCCNGGA | 2 cut(s) | 630, 1039 |
| PkrI | GCNGC | 3 cut(s) | 799, 931, 1401 |
| Ple19I | CGATCG | 1 cut(s) | 1194 |
| PleI | GAGTC | 2 cut(s) | 395, 1027 |
| PluTI | GGCGCC | 1 cut(s) | 515 |
| PpsI | GAGTC | 2 cut(s) | 395, 1027 |
| PpuMI | RGGWCCY | 1 cut(s) | 1257 |
| Psp5II | RGGWCCY | 1 cut(s) | 1257 |
| Psp6I | CCWGG | 8 cut(s) | 264, 354, 507, 1039, 1139, 1209, 1301, 1421 |
| PspEI | GGTNACC | 1 cut(s) | 1205 |
| PspFI | CCCAGC | 3 cut(s) | 105, 269, 458 |
| PspGI | CCWGG | 8 cut(s) | 264, 354, 507, 1039, 1139, 1209, 1301, 1421 |
| PspN4I | GGNNCC | 6 cut(s) | 387, 513, 945, 957, 1048, 1259 |
| PspPI | GGNCC | 3 cut(s) | 262, 1257, 1279 |
| PspPPI | RGGWCCY | 1 cut(s) | 1257 |
| PspXI | VCTCGAGB | 1 cut(s) | 923 |
| PstI | CTGCAG | 1 cut(s) | 661 |
| PsuI | RGATCY | 2 cut(s) | 1093, 1270 |
| PvuI | CGATCG | 1 cut(s) | 1194 |
| RruI | TCGCGA | 2 cut(s) | 645, 1127 |
| RsaI | GTAC | 5 cut(s) | 71, 309, 576, 663, 1216 |
| RsaNI | GTAC | 5 cut(s) | 70, 308, 575, 662, 1215 |
| SaqAI | TTAA | 1 cut(s) | 1286 |
| SatI | GCNGC | 3 cut(s) | 798, 930, 1400 |
| Sau3AI | GATC | 6 cut(s) | 16, 688, 1078, 1093, 1191, 1270 |
| Sau96I | GGNCC | 3 cut(s) | 262, 1257, 1279 |
| ScaI | AGTACT | 1 cut(s) | 663 |
| SchI | GAGTC | 2 cut(s) | 395, 1027 |
| SduI | GDGCHC | 1 cut(s) | 291 |
| SfaNI | GCATC | 4 cut(s) | 157, 478, 862, 1398 |
| SfcI | CTRYAG | 2 cut(s) | 657, 777 |
| SfoI | GGCGCC | 1 cut(s) | 513 |
| Sfr274I | CTCGAG | 1 cut(s) | 923 |
| SinI | GGWCC | 2 cut(s) | 262, 1257 |
| SlaI | CTCGAG | 1 cut(s) | 923 |
| SmlI | CTYRAG | 5 cut(s) | 746, 923, 950, 1328, 1361 |
| SmoI | CTYRAG | 5 cut(s) | 746, 923, 950, 1328, 1361 |
| Sse9I | AATT | 2 cut(s) | 738, 1283 |
| SsiI | CCGC | 8 cut(s) | 218, 243, 474, 626, 798, 842, 929, 1400 |
| SspDI | GGCGCC | 1 cut(s) | 511 |
| SspMI | CTAG | 2 cut(s) | 572, 1374 |
| StyI | CCWWGG | 2 cut(s) | 669, 1373 |
| TaaI | ACNGT | 2 cut(s) | 433, 1291 |
| TaiI | ACGT | 2 cut(s) | 396, 849 |
| TaqI | TCGA | 9 cut(s) | 396, 591, 924, 939, 1026, 1077, 1190, 1194, 1349 |
| TasI | AATT | 2 cut(s) | 738, 1283 |
| TatI | WGTACW | 1 cut(s) | 661 |
| TauI | GCSGC | 3 cut(s) | 800, 932, 1402 |
| TfiI | GAWTC | 2 cut(s) | 694, 766 |
| Tru1I | TTAA | 1 cut(s) | 1286 |
| Tru9I | TTAA | 1 cut(s) | 1286 |
| TscAI | CASTG | 3 cut(s) | 15, 355, 556 |
| TseFI | GTSAC | 4 cut(s) | 379, 1030, 1205, 1294 |
| Tsp45I | GTSAC | 4 cut(s) | 379, 1030, 1205, 1294 |
| TspDTI | ATGAA | 4 cut(s) | 138, 425, 915, 1442 |
| TspGWI | ACGGA | 2 cut(s) | 398, 1196 |
| TspRI | CASTG | 3 cut(s) | 15, 355, 556 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 317 |
| VpaK11BI | GGWCC | 2 cut(s) | 262, 1257 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 891, 1041, 1348 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 515, 1419 |
| XhoI | CTCGAG | 1 cut(s) | 923 |
| XmaJI | CCTAGG | 1 cut(s) | 1373 |
| XspI | CTAG | 2 cut(s) | 572, 1374 |
| ZraI | GACGTC | 1 cut(s) | 394 |
| ZrmI | AGTACT | 1 cut(s) | 663 |