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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 219 |
| AccII | CGCG | 7 cut(s) | 163, 250, 342, 490, 629, 686, 814 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AclWI | GGATC | 4 cut(s) | 581, 594, 595, 608 |
| AcoI | YGGCCR | 4 cut(s) | 182, 482, 500, 681 |
| AcsI | RAATTY | 1 cut(s) | 413 |
| AfaI | GTAC | 6 cut(s) | 511, 538, 619, 697, 735, 768 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 341, 452, 513 |
| AflIII | ACRYGT | 1 cut(s) | 698 |
| AgeI | ACCGGT | 4 cut(s) | 103, 309, 445, 506 |
| AjiI | CACGTC | 1 cut(s) | 701 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 597, 629 |
| AluBI | AGCT | 1 cut(s) | 332 |
| AluI | AGCT | 1 cut(s) | 332 |
| Alw26I | GTCTC | 1 cut(s) | 556 |
| AlwI | GGATC | 4 cut(s) | 581, 594, 595, 608 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 7 cut(s) | 3, 182, 204, 301, 482, 500, 681 |
| ApeKI | GCWGC | 1 cut(s) | 329 |
| ApoI | RAATTY | 1 cut(s) | 413 |
| AsiGI | ACCGGT | 4 cut(s) | 103, 309, 445, 506 |
| AspLEI | GCGC | 4 cut(s) | 85, 165, 814, 816 |
| AspS9I | GGNCC | 6 cut(s) | 4, 151, 157, 231, 302, 312 |
| AsuC2I | CCSGG | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 1 cut(s) | 134 |
| AvaII | GGWCC | 4 cut(s) | 151, 157, 231, 312 |
| BalI | TGGCCA | 1 cut(s) | 502 |
| BamHI | GGATCC | 2 cut(s) | 586, 600 |
| BanII | GRGCYC | 1 cut(s) | 256 |
| BbvI | GCAGC | 1 cut(s) | 341 |
| BccI | CCATC | 1 cut(s) | 184 |
| BceAI | ACGGC | 1 cut(s) | 219 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 175, 209 |
| BcnI | CCSGG | 1 cut(s) | 155 |
| BcoDI | GTCTC | 1 cut(s) | 556 |
| BfaI | CTAG | 1 cut(s) | 513 |
| BfoI | RGCGCY | 1 cut(s) | 86 |
| BisI | GCNGC | 6 cut(s) | 57, 166, 330, 485, 488, 684 |
| BlsI | GCNGC | 6 cut(s) | 58, 167, 331, 486, 489, 685 |
| Bme1390I | CCNGG | 1 cut(s) | 155 |
| Bme18I | GGWCC | 4 cut(s) | 151, 157, 231, 312 |
| BmgBI | CACGTC | 1 cut(s) | 701 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 151, 157, 231, 302, 312 |
| BmiI | GGNNCC | 6 cut(s) | 6, 72, 158, 159, 588, 602 |
| BmrFI | CCNGG | 1 cut(s) | 155 |
| BmrI | ACTGGG | 1 cut(s) | 75 |
| BmsI | GCATC | 2 cut(s) | 434, 561 |
| BmuI | ACTGGG | 1 cut(s) | 75 |
| BpuMI | CCSGG | 1 cut(s) | 155 |
| Bsa29I | ATCGAT | 1 cut(s) | 27 |
| BsaBI | GATNNNNATC | 1 cut(s) | 23 |
| BsaJI | CCNNGG | 3 cut(s) | 298, 340, 461 |
| BsaWI | WCCGGW | 6 cut(s) | 103, 228, 309, 394, 445, 506 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 66, 67, 341, 452, 513 |
| Bse118I | RCCGGY | 4 cut(s) | 103, 309, 445, 506 |
| Bse1I | ACTGG | 1 cut(s) | 70 |
| Bse8I | GATNNNNATC | 1 cut(s) | 23 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 27 |
| BseDI | CCNNGG | 3 cut(s) | 298, 340, 461 |
| BseGI | GGATG | 2 cut(s) | 320, 552 |
| BseJI | GATNNNNATC | 1 cut(s) | 23 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 341, 452, 513 |
| BseNI | ACTGG | 1 cut(s) | 70 |
| BsePI | GCGCGC | 1 cut(s) | 812 |
| BseRI | GAGGAG | 1 cut(s) | 829 |
| BseX3I | CGGCCG | 2 cut(s) | 182, 681 |
| BseXI | GCAGC | 1 cut(s) | 341 |
| Bsh1236I | CGCG | 7 cut(s) | 163, 250, 342, 490, 629, 686, 814 |
| Bsh1285I | CGRYCG | 3 cut(s) | 31, 185, 684 |
| BshFI | GGCC | 7 cut(s) | 5, 184, 206, 303, 484, 502, 683 |
| BshTI | ACCGGT | 4 cut(s) | 103, 309, 445, 506 |
| BshVI | ATCGAT | 1 cut(s) | 27 |
| BsiEI | CGRYCG | 3 cut(s) | 31, 185, 684 |
| BsiSI | CCGG | 7 cut(s) | 104, 154, 229, 310, 395, 446, 507 |
| BslFI | GGGAC | 2 cut(s) | 143, 687 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 66, 67, 341, 452, 513 |
| BsmAI | GTCTC | 1 cut(s) | 556 |
| BsmFI | GGGAC | 2 cut(s) | 143, 687 |
| BsnI | GGCC | 7 cut(s) | 5, 184, 206, 303, 484, 502, 683 |
| Bsp1286I | GDGCHC | 1 cut(s) | 256 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| Bsp19I | CCATGG | 1 cut(s) | 298 |
| BspANI | GGCC | 7 cut(s) | 5, 184, 206, 303, 484, 502, 683 |
| BspDI | ATCGAT | 1 cut(s) | 27 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspFNI | CGCG | 7 cut(s) | 163, 250, 342, 490, 629, 686, 814 |
| BspLI | GGNNCC | 6 cut(s) | 6, 72, 158, 159, 588, 602 |
| BspPI | GGATC | 4 cut(s) | 581, 594, 595, 608 |
| BsrFI | RCCGGY | 4 cut(s) | 103, 309, 445, 506 |
| BsrI | ACTGG | 1 cut(s) | 70 |
| BssAI | RCCGGY | 4 cut(s) | 103, 309, 445, 506 |
| BssECI | CCNNGG | 3 cut(s) | 298, 340, 461 |
| BssHII | GCGCGC | 1 cut(s) | 812 |
| BssMI | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| BssT1I | CCWWGG | 2 cut(s) | 298, 461 |
| Bst6I | CTCTTC | 1 cut(s) | 30 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 748 |
| BstC8I | GCNNGC | 2 cut(s) | 252, 814 |
| BstDEI | CTNAG | 1 cut(s) | 540 |
| BstDSI | CCRYGG | 2 cut(s) | 298, 340 |
| BstF5I | GGATG | 2 cut(s) | 320, 552 |
| BstFNI | CGCG | 7 cut(s) | 163, 250, 342, 490, 629, 686, 814 |
| BstH2I | RGCGCY | 1 cut(s) | 86 |
| BstHHI | GCGC | 4 cut(s) | 85, 165, 814, 816 |
| BstKTI | GATC | 6 cut(s) | 31, 589, 603, 660, 808, 837 |
| BstMAI | GTCTC | 1 cut(s) | 556 |
| BstMBI | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| BstMCI | CGRYCG | 3 cut(s) | 31, 185, 684 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 260, 575, 748, 818 |
| BstSCI | CCNGG | 1 cut(s) | 153 |
| BstUI | CGCG | 7 cut(s) | 163, 250, 342, 490, 629, 686, 814 |
| BstV1I | GCAGC | 1 cut(s) | 341 |
| BstX2I | RGATCY | 2 cut(s) | 586, 600 |
| BstYI | RGATCY | 2 cut(s) | 586, 600 |
| BstZI | CGGCCG | 2 cut(s) | 182, 681 |
| Bsu15I | ATCGAT | 1 cut(s) | 27 |
| BsuRI | GGCC | 7 cut(s) | 5, 184, 206, 303, 484, 502, 683 |
| BsuTUI | ATCGAT | 1 cut(s) | 27 |
| BtgI | CCRYGG | 2 cut(s) | 298, 340 |
| BtrI | CACGTC | 1 cut(s) | 701 |
| BtsCI | GGATG | 2 cut(s) | 320, 552 |
| Cac8I | GCNNGC | 2 cut(s) | 252, 814 |
| CfoI | GCGC | 4 cut(s) | 85, 165, 814, 816 |
| Cfr10I | RCCGGY | 4 cut(s) | 103, 309, 445, 506 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 151, 157, 231, 302, 312 |
| Cfr42I | CCGCGG | 1 cut(s) | 343 |
| ClaI | ATCGAT | 1 cut(s) | 27 |
| CpoI | CGGWCCG | 2 cut(s) | 151, 312 |
| CseI | GACGC | 1 cut(s) | 196 |
| Csp6I | GTAC | 6 cut(s) | 510, 537, 618, 696, 734, 767 |
| CspAI | ACCGGT | 4 cut(s) | 103, 309, 445, 506 |
| CspI | CGGWCCG | 2 cut(s) | 151, 312 |
| CviAII | CATG | 5 cut(s) | 146, 264, 299, 549, 743 |
| CviQI | GTAC | 6 cut(s) | 510, 537, 618, 696, 734, 767 |
| DdeI | CTNAG | 1 cut(s) | 540 |
| DpnI | GATC | 6 cut(s) | 30, 588, 602, 659, 807, 836 |
| DpnII | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| EaeI | YGGCCR | 4 cut(s) | 182, 482, 500, 681 |
| EagI | CGGCCG | 2 cut(s) | 182, 681 |
| Eam1104I | CTCTTC | 1 cut(s) | 30 |
| EarI | CTCTTC | 1 cut(s) | 30 |
| EclXI | CGGCCG | 2 cut(s) | 182, 681 |
| Eco130I | CCWWGG | 2 cut(s) | 298, 461 |
| Eco24I | GRGCYC | 1 cut(s) | 256 |
| Eco47I | GGWCC | 4 cut(s) | 151, 157, 231, 312 |
| Eco52I | CGGCCG | 2 cut(s) | 182, 681 |
| EcoO109I | RGGNCCY | 1 cut(s) | 157 |
| EcoT14I | CCWWGG | 2 cut(s) | 298, 461 |
| EcoT22I | ATGCAT | 1 cut(s) | 554 |
| EcoT38I | GRGCYC | 1 cut(s) | 256 |
| ErhI | CCWWGG | 2 cut(s) | 298, 461 |
| FaeI | CATG | 5 cut(s) | 149, 267, 302, 552, 746 |
| FaqI | GGGAC | 2 cut(s) | 143, 687 |
| FatI | CATG | 5 cut(s) | 145, 263, 298, 548, 742 |
| FauI | CCCGC | 3 cut(s) | 168, 255, 792 |
| FblI | GTMKAC | 1 cut(s) | 219 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 166, 330, 485, 488, 684 |
| FokI | GGATG | 2 cut(s) | 307, 539 |
| FriOI | GRGCYC | 1 cut(s) | 256 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 166, 330, 485, 488, 684 |
| FspBI | CTAG | 1 cut(s) | 513 |
| GlaI | GCGC | 4 cut(s) | 84, 164, 813, 815 |
| GluI | GCNGC | 6 cut(s) | 57, 166, 330, 485, 488, 684 |
| HaeII | RGCGCY | 1 cut(s) | 86 |
| HaeIII | GGCC | 7 cut(s) | 5, 184, 206, 303, 484, 502, 683 |
| HapII | CCGG | 7 cut(s) | 104, 154, 229, 310, 395, 446, 507 |
| HgaI | GACGC | 1 cut(s) | 196 |
| HhaI | GCGC | 4 cut(s) | 85, 165, 814, 816 |
| Hin1II | CATG | 5 cut(s) | 149, 267, 302, 552, 746 |
| Hin6I | GCGC | 4 cut(s) | 83, 163, 812, 814 |
| HinP1I | GCGC | 4 cut(s) | 83, 163, 812, 814 |
| HincII | GTYRAC | 1 cut(s) | 220 |
| HindII | GTYRAC | 1 cut(s) | 220 |
| HinfI | GANTC | 6 cut(s) | 132, 172, 243, 276, 564, 780 |
| HpaII | CCGG | 7 cut(s) | 104, 154, 229, 310, 395, 446, 507 |
| HphI | GGTGA | 1 cut(s) | 134 |
| Hpy166II | GTNNAC | 2 cut(s) | 220, 698 |
| Hpy188I | TCNGA | 5 cut(s) | 131, 238, 586, 600, 848 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 395 |
| Hpy8I | GTNNAC | 2 cut(s) | 220, 698 |
| Hpy99I | CGWCG | 3 cut(s) | 92, 190, 221 |
| HpyAV | CCTTC | 3 cut(s) | 233, 591, 747 |
| HpyCH4IV | ACGT | 1 cut(s) | 700 |
| HpyCH4V | TGCA | 4 cut(s) | 263, 411, 552, 715 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 260, 575, 748, 818 |
| HpyF3I | CTNAG | 1 cut(s) | 540 |
| HpySE526I | ACGT | 1 cut(s) | 700 |
| Hsp92II | CATG | 5 cut(s) | 149, 267, 302, 552, 746 |
| HspAI | GCGC | 4 cut(s) | 83, 163, 812, 814 |
| KflI | GGGWCCC | 1 cut(s) | 157 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| KspI | CCGCGG | 1 cut(s) | 343 |
| Kzo9I | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| LmnI | GCTCC | 1 cut(s) | 337 |
| LpnPI | CCDG | 9 cut(s) | 51, 117, 167, 242, 323, 365, 408, 459, 520 |
| Lsp1109I | GCAGC | 1 cut(s) | 341 |
| LweI | GCATC | 2 cut(s) | 434, 561 |
| MaeI | CTAG | 1 cut(s) | 513 |
| MaeII | ACGT | 1 cut(s) | 700 |
| MalI | GATC | 6 cut(s) | 30, 588, 602, 659, 807, 836 |
| MboI | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| MboII | GAAGA | 5 cut(s) | 28, 47, 412, 786, 789 |
| MflI | RGATCY | 2 cut(s) | 586, 600 |
| MhlI | GDGCHC | 1 cut(s) | 256 |
| MlsI | TGGCCA | 1 cut(s) | 502 |
| MluCI | AATT | 4 cut(s) | 21, 270, 385, 413 |
| MluNI | TGGCCA | 1 cut(s) | 502 |
| MlyI | GAGTC | 4 cut(s) | 126, 237, 270, 558 |
| MmeI | TCCRAC | 2 cut(s) | 154, 473 |
| Mox20I | TGGCCA | 1 cut(s) | 502 |
| Mph1103I | ATGCAT | 1 cut(s) | 554 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MscI | TGGCCA | 1 cut(s) | 502 |
| MslI | CAYNNNNRTG | 2 cut(s) | 104, 144 |
| Msp20I | TGGCCA | 1 cut(s) | 502 |
| MspA1I | CMGCKG | 1 cut(s) | 342 |
| MspI | CCGG | 7 cut(s) | 104, 154, 229, 310, 395, 446, 507 |
| MspR9I | CCNGG | 1 cut(s) | 155 |
| MvnI | CGCG | 7 cut(s) | 163, 250, 342, 490, 629, 686, 814 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 260, 575, 748, 818 |
| NciI | CCSGG | 1 cut(s) | 155 |
| NcoI | CCATGG | 1 cut(s) | 298 |
| NdeII | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| NlaIII | CATG | 5 cut(s) | 149, 267, 302, 552, 746 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 72, 158, 159, 588, 602 |
| NmeAIII | GCCGAG | 2 cut(s) | 160, 659 |
| NsiI | ATGCAT | 1 cut(s) | 554 |
| PauI | GCGCGC | 1 cut(s) | 812 |
| PfeI | GAWTC | 2 cut(s) | 172, 780 |
| PflFI | GACNNNGTC | 1 cut(s) | 155 |
| PinAI | ACCGGT | 4 cut(s) | 103, 309, 445, 506 |
| PkrI | GCNGC | 6 cut(s) | 58, 167, 331, 486, 489, 685 |
| Ple19I | CGATCG | 1 cut(s) | 31 |
| PleI | GAGTC | 4 cut(s) | 126, 237, 270, 558 |
| PpsI | GAGTC | 4 cut(s) | 126, 237, 270, 558 |
| PpuMI | RGGWCCY | 1 cut(s) | 157 |
| Psp5II | RGGWCCY | 1 cut(s) | 157 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 72, 158, 159, 588, 602 |
| PspPI | GGNCC | 6 cut(s) | 4, 151, 157, 231, 302, 312 |
| PspPPI | RGGWCCY | 1 cut(s) | 157 |
| PsuI | RGATCY | 2 cut(s) | 586, 600 |
| PsyI | GACNNNGTC | 1 cut(s) | 155 |
| PteI | GCGCGC | 1 cut(s) | 812 |
| PvuI | CGATCG | 1 cut(s) | 31 |
| RsaI | GTAC | 6 cut(s) | 511, 538, 619, 697, 735, 768 |
| RsaNI | GTAC | 6 cut(s) | 510, 537, 618, 696, 734, 767 |
| RseI | CAYNNNNRTG | 2 cut(s) | 104, 144 |
| Rsr2I | CGGWCCG | 2 cut(s) | 151, 312 |
| RsrII | CGGWCCG | 2 cut(s) | 151, 312 |
| SacII | CCGCGG | 1 cut(s) | 343 |
| SalI | GTCGAC | 1 cut(s) | 218 |
| SatI | GCNGC | 6 cut(s) | 57, 166, 330, 485, 488, 684 |
| Sau3AI | GATC | 6 cut(s) | 28, 586, 600, 657, 805, 834 |
| Sau96I | GGNCC | 6 cut(s) | 4, 151, 157, 231, 302, 312 |
| SchI | GAGTC | 4 cut(s) | 126, 237, 270, 558 |
| ScrFI | CCNGG | 1 cut(s) | 155 |
| SduI | GDGCHC | 1 cut(s) | 256 |
| SetI | ASST | 8 cut(s) | 120, 225, 288, 334, 475, 697, 703, 739 |
| SfaNI | GCATC | 2 cut(s) | 434, 561 |
| Sfr303I | CCGCGG | 1 cut(s) | 343 |
| SgrBI | CCGCGG | 1 cut(s) | 343 |
| SinI | GGWCC | 4 cut(s) | 151, 157, 231, 312 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 104, 144 |
| Sse9I | AATT | 4 cut(s) | 21, 270, 385, 413 |
| SspMI | CTAG | 1 cut(s) | 513 |
| StyD4I | CCNGG | 1 cut(s) | 153 |
| StyI | CCWWGG | 2 cut(s) | 298, 461 |
| TaiI | ACGT | 1 cut(s) | 703 |
| TaqI | TCGA | 6 cut(s) | 27, 219, 274, 294, 592, 808 |
| TasI | AATT | 4 cut(s) | 21, 270, 385, 413 |
| TatI | WGTACW | 1 cut(s) | 536 |
| TauI | GCSGC | 5 cut(s) | 59, 168, 487, 490, 686 |
| TfiI | GAWTC | 2 cut(s) | 172, 780 |
| TseI | GCWGC | 1 cut(s) | 329 |
| TspDTI | ATGAA | 3 cut(s) | 406, 759, 815 |
| TspGWI | ACGGA | 1 cut(s) | 205 |
| Tth111I | GACNNNGTC | 1 cut(s) | 155 |
| VpaK11BI | GGWCC | 4 cut(s) | 151, 157, 231, 312 |
| XapI | RAATTY | 1 cut(s) | 413 |
| XmiI | GTMKAC | 1 cut(s) | 219 |
| XspI | CTAG | 1 cut(s) | 513 |
| Zsp2I | ATGCAT | 1 cut(s) | 554 |