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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 270 |
| Acc16I | TGCGCA | 1 cut(s) | 513 |
| Acc65I | GGTACC | 1 cut(s) | 637 |
| AccB1I | GGYRCC | 1 cut(s) | 637 |
| AccBSI | CCGCTC | 2 cut(s) | 213, 1042 |
| AclWI | GGATC | 3 cut(s) | 27, 98, 644 |
| AcoI | YGGCCR | 1 cut(s) | 588 |
| AcsI | RAATTY | 1 cut(s) | 1303 |
| AcuI | CTGAAG | 2 cut(s) | 453, 729 |
| AfaI | GTAC | 5 cut(s) | 54, 639, 852, 1492, 1549 |
| AflIII | ACRYGT | 1 cut(s) | 1416 |
| AgsI | TTSAA | 9 cut(s) | 146, 1214, 1247, 1289, 1397, 1425, 1456, 1487, 1497 |
| AjnI | CCWGG | 6 cut(s) | 601, 868, 931, 1076, 1137, 1203 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1173, 1205 |
| Alw26I | GTCTC | 2 cut(s) | 1158, 1302 |
| AlwI | GGATC | 3 cut(s) | 27, 98, 644 |
| AoxI | GGCC | 8 cut(s) | 405, 588, 750, 861, 1089, 1102, 1236, 1281 |
| ApoI | RAATTY | 1 cut(s) | 1303 |
| AseI | ATTAAT | 1 cut(s) | 1047 |
| Asp718I | GGTACC | 1 cut(s) | 637 |
| AspLEI | GCGC | 6 cut(s) | 64, 207, 349, 400, 514, 523 |
| AsuHPI | GGTGA | 9 cut(s) | 136, 329, 680, 691, 736, 997, 1178, 1243, 1553 |
| AvaII | GGWCC | 4 cut(s) | 217, 279, 605, 1194 |
| AxyI | CCTNAGG | 2 cut(s) | 483, 768 |
| BaeGI | GKGCMC | 1 cut(s) | 1504 |
| BanI | GGYRCC | 1 cut(s) | 637 |
| BanII | GRGCYC | 3 cut(s) | 70, 138, 917 |
| BauI | CACGAG | 2 cut(s) | 578, 1106 |
| BbsI | GAAGAC | 2 cut(s) | 125, 1404 |
| BbvCI | CCTCAGC | 1 cut(s) | 612 |
| BccI | CCATC | 5 cut(s) | 887, 958, 995, 1472, 1512 |
| BceAI | ACGGC | 1 cut(s) | 1251 |
| BciT130I | CCWGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| BciVI | GTATCC | 1 cut(s) | 16 |
| BcoDI | GTCTC | 2 cut(s) | 1158, 1302 |
| BfaI | CTAG | 5 cut(s) | 360, 530, 1277, 1359, 1448 |
| BfoI | RGCGCY | 2 cut(s) | 350, 524 |
| BfuI | GTATCC | 1 cut(s) | 16 |
| BmcAI | AGTACT | 1 cut(s) | 1492 |
| Bme1390I | CCNGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| Bme18I | GGWCC | 4 cut(s) | 217, 279, 605, 1194 |
| BmrFI | CCNGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| BmsI | GCATC | 4 cut(s) | 385, 787, 793, 1111 |
| BpiI | GAAGAC | 2 cut(s) | 125, 1404 |
| BpmI | CTGGAG | 4 cut(s) | 96, 268, 360, 852 |
| Bpu10I | CCTNAGC | 6 cut(s) | 612, 816, 951, 1038, 1086, 1311 |
| BpuEI | CTTGAG | 2 cut(s) | 66, 534 |
| BsaBI | GATNNNNATC | 2 cut(s) | 168, 569 |
| BsaJI | CCNNGG | 6 cut(s) | 233, 351, 630, 869, 1138, 1227 |
| BsaWI | WCCGGW | 1 cut(s) | 415 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 708, 738 |
| Bse118I | RCCGGY | 2 cut(s) | 58, 276 |
| Bse1I | ACTGG | 6 cut(s) | 270, 319, 377, 401, 662, 837 |
| Bse21I | CCTNAGG | 2 cut(s) | 483, 768 |
| Bse3DI | GCAATG | 1 cut(s) | 1299 |
| Bse8I | GATNNNNATC | 2 cut(s) | 168, 569 |
| BseBI | CCWGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| BseDI | CCNNGG | 6 cut(s) | 233, 351, 630, 869, 1138, 1227 |
| BseGI | GGATG | 2 cut(s) | 250, 898 |
| BseJI | GATNNNNATC | 2 cut(s) | 168, 569 |
| BseMI | GCAATG | 1 cut(s) | 1299 |
| BseNI | ACTGG | 6 cut(s) | 270, 319, 377, 401, 662, 837 |
| BseRI | GAGGAG | 1 cut(s) | 99 |
| BseSI | GKGCMC | 1 cut(s) | 1504 |
| BseX3I | CGGCCG | 1 cut(s) | 588 |
| BseYI | CCCAGC | 2 cut(s) | 293, 1564 |
| BsgI | GTGCAG | 4 cut(s) | 440, 483, 543, 560 |
| Bsh1285I | CGRYCG | 2 cut(s) | 495, 591 |
| BshFI | GGCC | 8 cut(s) | 407, 590, 752, 863, 1091, 1104, 1238, 1283 |
| BshNI | GGYRCC | 1 cut(s) | 637 |
| BsiEI | CGRYCG | 2 cut(s) | 495, 591 |
| BsiSI | CCGG | 4 cut(s) | 59, 277, 416, 587 |
| BslFI | GGGAC | 1 cut(s) | 337 |
| BsmAI | GTCTC | 2 cut(s) | 1158, 1302 |
| BsmFI | GGGAC | 1 cut(s) | 337 |
| BsmI | GAATGC | 2 cut(s) | 733, 1451 |
| BsnI | GGCC | 8 cut(s) | 407, 590, 752, 863, 1091, 1104, 1238, 1283 |
| Bsp1286I | GDGCHC | 4 cut(s) | 70, 138, 917, 1504 |
| Bsp143I | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| Bsp19I | CCATGG | 1 cut(s) | 233 |
| Bsp68I | TCGCGA | 2 cut(s) | 1131, 1320 |
| BspANI | GGCC | 8 cut(s) | 407, 590, 752, 863, 1091, 1104, 1238, 1283 |
| BspPI | GGATC | 3 cut(s) | 27, 98, 644 |
| BspT107I | GGYRCC | 1 cut(s) | 637 |
| BsrBI | CCGCTC | 2 cut(s) | 213, 1042 |
| BsrDI | GCAATG | 1 cut(s) | 1299 |
| BsrFI | RCCGGY | 2 cut(s) | 58, 276 |
| BsrI | ACTGG | 6 cut(s) | 270, 319, 377, 401, 662, 837 |
| BssAI | RCCGGY | 2 cut(s) | 58, 276 |
| BssECI | CCNNGG | 6 cut(s) | 233, 351, 630, 869, 1138, 1227 |
| BssMI | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| BssSI | CACGAG | 2 cut(s) | 578, 1106 |
| BssT1I | CCWWGG | 1 cut(s) | 233 |
| Bst2BI | CACGAG | 2 cut(s) | 578, 1106 |
| Bst2UI | CCWGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 181 |
| Bst6I | CTCTTC | 4 cut(s) | 48, 234, 447, 1589 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 9 cut(s) | 66, 391, 440, 558, 693, 980, 1083, 1318, 1344 |
| BstDSI | CCRYGG | 4 cut(s) | 233, 351, 630, 1227 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 711 |
| BstF5I | GGATG | 2 cut(s) | 250, 898 |
| BstH2I | RGCGCY | 2 cut(s) | 350, 524 |
| BstHHI | GCGC | 6 cut(s) | 64, 207, 349, 400, 514, 523 |
| BstKTI | GATC | 7 cut(s) | 35, 106, 129, 262, 495, 529, 652 |
| BstMAI | GTCTC | 2 cut(s) | 1158, 1302 |
| BstMBI | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| BstMCI | CGRYCG | 2 cut(s) | 495, 591 |
| BstNI | CCWGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| BstNSI | RCATGY | 1 cut(s) | 293 |
| BstSCI | CCNGG | 6 cut(s) | 601, 868, 931, 1076, 1137, 1203 |
| BstSLI | GKGCMC | 1 cut(s) | 1504 |
| BstV2I | GAAGAC | 2 cut(s) | 125, 1404 |
| BstZI | CGGCCG | 1 cut(s) | 588 |
| Bsu36I | CCTNAGG | 2 cut(s) | 483, 768 |
| BsuI | GTATCC | 1 cut(s) | 16 |
| BsuRI | GGCC | 8 cut(s) | 407, 590, 752, 863, 1091, 1104, 1238, 1283 |
| BtgI | CCRYGG | 4 cut(s) | 233, 351, 630, 1227 |
| BtgZI | GCGATG | 1 cut(s) | 408 |
| BtsCI | GGATG | 2 cut(s) | 250, 898 |
| BtsIMutI | CAGTG | 3 cut(s) | 225, 408, 990 |
| BtuMI | TCGCGA | 2 cut(s) | 1131, 1320 |
| Cac8I | GCNNGC | 9 cut(s) | 66, 391, 440, 558, 693, 980, 1083, 1318, 1344 |
| CfoI | GCGC | 6 cut(s) | 64, 207, 349, 400, 514, 523 |
| Cfr10I | RCCGGY | 2 cut(s) | 58, 276 |
| Cfr42I | CCGCGG | 2 cut(s) | 633, 1230 |
| CseI | GACGC | 3 cut(s) | 782, 927, 1364 |
| Csp6I | GTAC | 5 cut(s) | 53, 638, 851, 1491, 1548 |
| CviAII | CATG | 4 cut(s) | 234, 290, 701, 1250 |
| CviQI | GTAC | 5 cut(s) | 53, 638, 851, 1491, 1548 |
| DpnI | GATC | 7 cut(s) | 34, 105, 128, 261, 494, 528, 651 |
| DpnII | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 270 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 270 |
| EaeI | YGGCCR | 1 cut(s) | 588 |
| EagI | CGGCCG | 1 cut(s) | 588 |
| Eam1104I | CTCTTC | 4 cut(s) | 48, 234, 447, 1589 |
| EarI | CTCTTC | 4 cut(s) | 48, 234, 447, 1589 |
| EclXI | CGGCCG | 1 cut(s) | 588 |
| Eco130I | CCWWGG | 1 cut(s) | 233 |
| Eco24I | GRGCYC | 3 cut(s) | 70, 138, 917 |
| Eco32I | GATATC | 1 cut(s) | 922 |
| Eco47I | GGWCC | 4 cut(s) | 217, 279, 605, 1194 |
| Eco52I | CGGCCG | 1 cut(s) | 588 |
| Eco57I | CTGAAG | 2 cut(s) | 453, 729 |
| Eco81I | CCTNAGG | 2 cut(s) | 483, 768 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 711 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1102 |
| EcoRII | CCWGG | 6 cut(s) | 601, 868, 931, 1076, 1137, 1203 |
| EcoRV | GATATC | 1 cut(s) | 922 |
| EcoT14I | CCWWGG | 1 cut(s) | 233 |
| EcoT38I | GRGCYC | 3 cut(s) | 70, 138, 917 |
| ErhI | CCWWGG | 1 cut(s) | 233 |
| FaeI | CATG | 4 cut(s) | 237, 293, 704, 1253 |
| FaqI | GGGAC | 1 cut(s) | 337 |
| FatI | CATG | 4 cut(s) | 233, 289, 700, 1249 |
| FauI | CCCGC | 2 cut(s) | 787, 1414 |
| FokI | GGATG | 2 cut(s) | 257, 905 |
| FriOI | GRGCYC | 3 cut(s) | 70, 138, 917 |
| FspBI | CTAG | 5 cut(s) | 360, 530, 1277, 1359, 1448 |
| FspI | TGCGCA | 1 cut(s) | 513 |
| GlaI | GCGC | 6 cut(s) | 63, 206, 348, 399, 513, 522 |
| GsaI | CCCAGC | 2 cut(s) | 297, 1568 |
| GsuI | CTGGAG | 4 cut(s) | 96, 268, 360, 852 |
| HaeII | RGCGCY | 2 cut(s) | 350, 524 |
| HaeIII | GGCC | 8 cut(s) | 407, 590, 752, 863, 1091, 1104, 1238, 1283 |
| HapII | CCGG | 4 cut(s) | 59, 277, 416, 587 |
| HgaI | GACGC | 3 cut(s) | 782, 927, 1364 |
| HhaI | GCGC | 6 cut(s) | 64, 207, 349, 400, 514, 523 |
| Hin1II | CATG | 4 cut(s) | 237, 293, 704, 1253 |
| Hin6I | GCGC | 6 cut(s) | 62, 205, 347, 398, 512, 521 |
| HinP1I | GCGC | 6 cut(s) | 62, 205, 347, 398, 512, 521 |
| HinfI | GANTC | 6 cut(s) | 149, 356, 598, 682, 1444, 1466 |
| HpaII | CCGG | 4 cut(s) | 59, 277, 416, 587 |
| HphI | GGTGA | 9 cut(s) | 136, 329, 680, 691, 736, 997, 1178, 1243, 1553 |
| Hpy166II | GTNNAC | 1 cut(s) | 1005 |
| Hpy188I | TCNGA | 8 cut(s) | 19, 160, 217, 472, 912, 1163, 1194, 1441 |
| Hpy8I | GTNNAC | 1 cut(s) | 1005 |
| Hpy99I | CGWCG | 2 cut(s) | 276, 1358 |
| HpyAV | CCTTC | 8 cut(s) | 293, 314, 477, 713, 834, 1043, 1199, 1441 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 181 |
| HpyCH4IV | ACGT | 1 cut(s) | 474 |
| HpyCH4V | TGCA | 5 cut(s) | 421, 500, 560, 577, 1111 |
| HpySE526I | ACGT | 1 cut(s) | 474 |
| Hsp92II | CATG | 4 cut(s) | 237, 293, 704, 1253 |
| HspAI | GCGC | 6 cut(s) | 62, 205, 347, 398, 512, 521 |
| KpnI | GGTACC | 1 cut(s) | 641 |
| KspI | CCGCGG | 2 cut(s) | 633, 1230 |
| Kzo9I | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| LmnI | GCTCC | 8 cut(s) | 133, 202, 688, 709, 781, 811, 935, 1532 |
| LweI | GCATC | 4 cut(s) | 385, 787, 793, 1111 |
| MaeI | CTAG | 5 cut(s) | 360, 530, 1277, 1359, 1448 |
| MaeII | ACGT | 1 cut(s) | 474 |
| MaeIII | GTNAC | 2 cut(s) | 1023, 1231 |
| MalI | GATC | 7 cut(s) | 34, 105, 128, 261, 494, 528, 651 |
| MbiI | CCGCTC | 2 cut(s) | 213, 1042 |
| MboI | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| MboII | GAAGA | 9 cut(s) | 35, 130, 158, 251, 359, 464, 962, 1409, 1576 |
| MfeI | CAATTG | 1 cut(s) | 1220 |
| MhlI | GDGCHC | 4 cut(s) | 70, 138, 917, 1504 |
| MluCI | AATT | 5 cut(s) | 446, 1220, 1303, 1376, 1456 |
| MluI | ACGCGT | 1 cut(s) | 1416 |
| MlyI | GAGTC | 2 cut(s) | 607, 1460 |
| MseI | TTAA | 2 cut(s) | 1047, 1176 |
| MslI | CAYNNNNRTG | 1 cut(s) | 416 |
| MspA1I | CMGCKG | 4 cut(s) | 188, 632, 782, 1229 |
| MspI | CCGG | 4 cut(s) | 59, 277, 416, 587 |
| MspR9I | CCNGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| MunI | CAATTG | 1 cut(s) | 1220 |
| Mva1269I | GAATGC | 2 cut(s) | 733, 1451 |
| MvaI | CCWGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| NcoI | CCATGG | 1 cut(s) | 233 |
| NdeII | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| NlaIII | CATG | 4 cut(s) | 237, 293, 704, 1253 |
| NmuCI | GTSAC | 1 cut(s) | 1231 |
| NruI | TCGCGA | 2 cut(s) | 1131, 1320 |
| NsbI | TGCGCA | 1 cut(s) | 513 |
| NspI | RCATGY | 1 cut(s) | 293 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 99, 135, 268, 979 |
| PctI | GAATGC | 2 cut(s) | 733, 1451 |
| PfeI | GAWTC | 4 cut(s) | 149, 356, 682, 1444 |
| PfoI | TCCNGGA | 1 cut(s) | 1203 |
| Ple19I | CGATCG | 1 cut(s) | 495 |
| PleI | GAGTC | 2 cut(s) | 606, 1460 |
| PpsI | GAGTC | 2 cut(s) | 606, 1460 |
| PshBI | ATTAAT | 1 cut(s) | 1047 |
| Psp6I | CCWGG | 6 cut(s) | 601, 868, 931, 1076, 1137, 1203 |
| PspFI | CCCAGC | 2 cut(s) | 293, 1564 |
| PspGI | CCWGG | 6 cut(s) | 601, 868, 931, 1076, 1137, 1203 |
| PvuI | CGATCG | 1 cut(s) | 495 |
| RruI | TCGCGA | 2 cut(s) | 1131, 1320 |
| RsaI | GTAC | 5 cut(s) | 54, 639, 852, 1492, 1549 |
| RsaNI | GTAC | 5 cut(s) | 53, 638, 851, 1491, 1548 |
| RseI | CAYNNNNRTG | 1 cut(s) | 416 |
| SacII | CCGCGG | 2 cut(s) | 633, 1230 |
| SaqAI | TTAA | 2 cut(s) | 1047, 1176 |
| Sau3AI | GATC | 7 cut(s) | 32, 103, 126, 259, 492, 526, 649 |
| ScaI | AGTACT | 1 cut(s) | 1492 |
| SchI | GAGTC | 2 cut(s) | 607, 1460 |
| ScrFI | CCNGG | 6 cut(s) | 603, 870, 933, 1078, 1139, 1205 |
| SduI | GDGCHC | 4 cut(s) | 70, 138, 917, 1504 |
| SfaNI | GCATC | 4 cut(s) | 385, 787, 793, 1111 |
| Sfr303I | CCGCGG | 2 cut(s) | 633, 1230 |
| SgrBI | CCGCGG | 2 cut(s) | 633, 1230 |
| SinI | GGWCC | 4 cut(s) | 217, 279, 605, 1194 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 416 |
| SmlI | CTYRAG | 2 cut(s) | 81, 549 |
| SmoI | CTYRAG | 2 cut(s) | 81, 549 |
| Sse9I | AATT | 5 cut(s) | 446, 1220, 1303, 1376, 1456 |
| SspMI | CTAG | 5 cut(s) | 360, 530, 1277, 1359, 1448 |
| StyD4I | CCNGG | 6 cut(s) | 601, 868, 931, 1076, 1137, 1203 |
| StyI | CCWWGG | 1 cut(s) | 233 |
| TaaI | ACNGT | 2 cut(s) | 124, 181 |
| TaiI | ACGT | 1 cut(s) | 477 |
| TaqI | TCGA | 2 cut(s) | 262, 855 |
| TasI | AATT | 5 cut(s) | 446, 1220, 1303, 1376, 1456 |
| TatI | WGTACW | 3 cut(s) | 52, 1490, 1547 |
| TauI | GCSGC | 8 cut(s) | 188, 213, 593, 632, 752, 788, 978, 1283 |
| TfiI | GAWTC | 4 cut(s) | 149, 356, 682, 1444 |
| Tru1I | TTAA | 2 cut(s) | 1047, 1176 |
| Tru9I | TTAA | 2 cut(s) | 1047, 1176 |
| TscAI | CASTG | 3 cut(s) | 232, 408, 997 |
| TseFI | GTSAC | 1 cut(s) | 1231 |
| Tsp45I | GTSAC | 1 cut(s) | 1231 |
| TspDTI | ATGAA | 5 cut(s) | 261, 555, 1065, 1355, 1423 |
| TspGWI | ACGGA | 1 cut(s) | 368 |
| TspRI | CASTG | 3 cut(s) | 232, 408, 997 |
| VpaK11BI | GGWCC | 4 cut(s) | 217, 279, 605, 1194 |
| VspI | ATTAAT | 1 cut(s) | 1047 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 711 |
| XapI | RAATTY | 1 cut(s) | 1303 |
| XceI | RCATGY | 1 cut(s) | 293 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 83, 1511 |
| XspI | CTAG | 5 cut(s) | 360, 530, 1277, 1359, 1448 |
| ZrmI | AGTACT | 1 cut(s) | 1492 |