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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 78 |
| Acc36I | ACCTGC | 1 cut(s) | 70 |
| AccBSI | CCGCTC | 1 cut(s) | 141 |
| AccII | CGCG | 7 cut(s) | 18, 20, 49, 357, 440, 457, 459 |
| AcoI | YGGCCR | 2 cut(s) | 3, 199 |
| AfaI | GTAC | 1 cut(s) | 572 |
| AfeI | AGCGCT | 1 cut(s) | 326 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 124, 253, 620, 621 |
| AgeI | ACCGGT | 1 cut(s) | 652 |
| AgsI | TTSAA | 2 cut(s) | 301, 395 |
| AluBI | AGCT | 3 cut(s) | 28, 65, 508 |
| AluI | AGCT | 3 cut(s) | 28, 65, 508 |
| Alw21I | GWGCWC | 1 cut(s) | 30 |
| Alw26I | GTCTC | 1 cut(s) | 630 |
| Ama87I | CYCGRG | 1 cut(s) | 620 |
| Aor51HI | AGCGCT | 1 cut(s) | 326 |
| AoxI | GGCC | 4 cut(s) | 3, 199, 541, 611 |
| ApaI | GGGCCC | 1 cut(s) | 615 |
| ApeKI | GCWGC | 2 cut(s) | 322, 426 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 179, 211 |
| AsiGI | ACCGGT | 1 cut(s) | 652 |
| AspLEI | GCGC | 7 cut(s) | 20, 49, 79, 327, 416, 442, 459 |
| AspS9I | GGNCC | 2 cut(s) | 611, 612 |
| AsuC2I | CCSGG | 2 cut(s) | 34, 580 |
| AsuHPI | GGTGA | 4 cut(s) | 78, 128, 229, 268 |
| AvaI | CYCGRG | 1 cut(s) | 620 |
| BaeGI | GKGCMC | 1 cut(s) | 615 |
| BalI | TGGCCA | 2 cut(s) | 5, 201 |
| BanII | GRGCYC | 3 cut(s) | 30, 337, 615 |
| BbsI | GAAGAC | 1 cut(s) | 106 |
| Bbv12I | GWGCWC | 1 cut(s) | 30 |
| BbvI | GCAGC | 2 cut(s) | 334, 438 |
| BccI | CCATC | 3 cut(s) | 14, 242, 247 |
| BceAI | ACGGC | 2 cut(s) | 301, 553 |
| BcnI | CCSGG | 2 cut(s) | 34, 580 |
| BcoDI | GTCTC | 1 cut(s) | 630 |
| BfaI | CTAG | 2 cut(s) | 62, 221 |
| BfoI | RGCGCY | 2 cut(s) | 328, 417 |
| BfuAI | ACCTGC | 1 cut(s) | 70 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 207, 491, 540 |
| BglII | AGATCT | 1 cut(s) | 58 |
| BisI | GCNGC | 5 cut(s) | 21, 323, 424, 427, 486 |
| BlsI | GCNGC | 5 cut(s) | 22, 324, 425, 428, 487 |
| Bme1390I | CCNGG | 2 cut(s) | 34, 580 |
| BmeT110I | CYCGRG | 1 cut(s) | 620 |
| BmgT120I | GGNCC | 2 cut(s) | 611, 612 |
| BmiI | GGNNCC | 3 cut(s) | 336, 613, 614 |
| BmrFI | CCNGG | 2 cut(s) | 34, 580 |
| BmsI | GCATC | 3 cut(s) | 219, 337, 565 |
| BpiI | GAAGAC | 1 cut(s) | 106 |
| BpuMI | CCSGG | 2 cut(s) | 34, 580 |
| Bsa29I | ATCGAT | 1 cut(s) | 98 |
| BsaI | GGTCTC | 1 cut(s) | 630 |
| BsaJI | CCNNGG | 3 cut(s) | 304, 409, 489 |
| BsaWI | WCCGGW | 1 cut(s) | 652 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 124, 253, 620, 621 |
| Bse118I | RCCGGY | 1 cut(s) | 652 |
| BseCI | ATCGAT | 1 cut(s) | 98 |
| BseDI | CCNNGG | 3 cut(s) | 304, 409, 489 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 124, 253, 620, 621 |
| BseRI | GAGGAG | 2 cut(s) | 398, 408 |
| BseSI | GKGCMC | 1 cut(s) | 615 |
| BseXI | GCAGC | 2 cut(s) | 334, 438 |
| BsgI | GTGCAG | 1 cut(s) | 253 |
| Bsh1236I | CGCG | 7 cut(s) | 18, 20, 49, 357, 440, 457, 459 |
| Bsh1285I | CGRYCG | 1 cut(s) | 434 |
| BshFI | GGCC | 4 cut(s) | 5, 201, 543, 613 |
| BshTI | ACCGGT | 1 cut(s) | 652 |
| BshVI | ATCGAT | 1 cut(s) | 98 |
| BsiEI | CGRYCG | 1 cut(s) | 434 |
| BsiHKAI | GWGCWC | 1 cut(s) | 30 |
| BsiHKCI | CYCGRG | 1 cut(s) | 620 |
| BsiSI | CCGG | 4 cut(s) | 34, 70, 580, 653 |
| BsiWI | CGTACG | 1 cut(s) | 570 |
| BslFI | GGGAC | 1 cut(s) | 533 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 124, 253, 620, 621 |
| BsmAI | GTCTC | 1 cut(s) | 630 |
| BsmFI | GGGAC | 1 cut(s) | 533 |
| BsmI | GAATGC | 1 cut(s) | 79 |
| BsnI | GGCC | 4 cut(s) | 5, 201, 543, 613 |
| Bso31I | GGTCTC | 1 cut(s) | 630 |
| BsoBI | CYCGRG | 1 cut(s) | 620 |
| Bsp120I | GGGCCC | 1 cut(s) | 611 |
| Bsp1286I | GDGCHC | 3 cut(s) | 30, 337, 615 |
| Bsp143I | GATC | 4 cut(s) | 58, 99, 431, 460 |
| Bsp19I | CCATGG | 1 cut(s) | 304 |
| BspANI | GGCC | 4 cut(s) | 5, 201, 543, 613 |
| BspDI | ATCGAT | 1 cut(s) | 98 |
| BspFNI | CGCG | 7 cut(s) | 18, 20, 49, 357, 440, 457, 459 |
| BspLI | GGNNCC | 3 cut(s) | 336, 613, 614 |
| BspMI | ACCTGC | 1 cut(s) | 70 |
| BspTNI | GGTCTC | 1 cut(s) | 630 |
| BsrBI | CCGCTC | 1 cut(s) | 141 |
| BsrFI | RCCGGY | 1 cut(s) | 652 |
| BssAI | RCCGGY | 1 cut(s) | 652 |
| BssECI | CCNNGG | 3 cut(s) | 304, 409, 489 |
| BssMI | GATC | 4 cut(s) | 58, 99, 431, 460 |
| BssT1I | CCWWGG | 1 cut(s) | 304 |
| BstC8I | GCNNGC | 6 cut(s) | 51, 67, 438, 532, 644, 648 |
| BstDEI | CTNAG | 2 cut(s) | 361, 497 |
| BstDSI | CCRYGG | 1 cut(s) | 304 |
| BstFNI | CGCG | 7 cut(s) | 18, 20, 49, 357, 440, 457, 459 |
| BstH2I | RGCGCY | 2 cut(s) | 328, 417 |
| BstHHI | GCGC | 7 cut(s) | 20, 49, 79, 327, 416, 442, 459 |
| BstKTI | GATC | 4 cut(s) | 61, 102, 434, 463 |
| BstMAI | GTCTC | 1 cut(s) | 630 |
| BstMBI | GATC | 4 cut(s) | 58, 99, 431, 460 |
| BstMCI | CGRYCG | 1 cut(s) | 434 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 207, 267, 322, 420, 491, 540, 565 |
| BstNSI | RCATGY | 1 cut(s) | 646 |
| BstSCI | CCNGG | 2 cut(s) | 32, 578 |
| BstSLI | GKGCMC | 1 cut(s) | 615 |
| BstUI | CGCG | 7 cut(s) | 18, 20, 49, 357, 440, 457, 459 |
| BstV1I | GCAGC | 2 cut(s) | 334, 438 |
| BstV2I | GAAGAC | 1 cut(s) | 106 |
| BstX2I | RGATCY | 1 cut(s) | 58 |
| BstYI | RGATCY | 1 cut(s) | 58 |
| Bsu15I | ATCGAT | 1 cut(s) | 98 |
| BsuRI | GGCC | 4 cut(s) | 5, 201, 543, 613 |
| BsuTUI | ATCGAT | 1 cut(s) | 98 |
| BtgI | CCRYGG | 1 cut(s) | 304 |
| BveI | ACCTGC | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 6 cut(s) | 51, 67, 438, 532, 644, 648 |
| CfoI | GCGC | 7 cut(s) | 20, 49, 79, 327, 416, 442, 459 |
| Cfr10I | RCCGGY | 1 cut(s) | 652 |
| Cfr13I | GGNCC | 2 cut(s) | 611, 612 |
| ClaI | ATCGAT | 1 cut(s) | 98 |
| Csp6I | GTAC | 1 cut(s) | 571 |
| CspAI | ACCGGT | 1 cut(s) | 652 |
| CviAII | CATG | 2 cut(s) | 305, 643 |
| CviQI | GTAC | 1 cut(s) | 571 |
| DdeI | CTNAG | 2 cut(s) | 361, 497 |
| DpnI | GATC | 4 cut(s) | 60, 101, 433, 462 |
| DpnII | GATC | 4 cut(s) | 58, 99, 431, 460 |
| EaeI | YGGCCR | 2 cut(s) | 3, 199 |
| EciI | GGCGGA | 2 cut(s) | 38, 618 |
| Ecl136II | GAGCTC | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 1 cut(s) | 304 |
| Eco24I | GRGCYC | 3 cut(s) | 30, 337, 615 |
| Eco31I | GGTCTC | 1 cut(s) | 630 |
| Eco32I | GATATC | 2 cut(s) | 226, 476 |
| Eco47III | AGCGCT | 1 cut(s) | 326 |
| Eco53kI | GAGCTC | 1 cut(s) | 28 |
| Eco88I | CYCGRG | 1 cut(s) | 620 |
| EcoICRI | GAGCTC | 1 cut(s) | 28 |
| EcoO109I | RGGNCCY | 1 cut(s) | 612 |
| EcoRV | GATATC | 2 cut(s) | 226, 476 |
| EcoT14I | CCWWGG | 1 cut(s) | 304 |
| EcoT38I | GRGCYC | 3 cut(s) | 30, 337, 615 |
| ErhI | CCWWGG | 1 cut(s) | 304 |
| FaeI | CATG | 2 cut(s) | 308, 646 |
| FaiI | YATR | 4 cut(s) | 306, 504, 513, 644 |
| FaqI | GGGAC | 1 cut(s) | 533 |
| FatI | CATG | 2 cut(s) | 304, 642 |
| FauI | CCCGC | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 5 cut(s) | 21, 323, 424, 427, 486 |
| FriOI | GRGCYC | 3 cut(s) | 30, 337, 615 |
| Fsp4HI | GCNGC | 5 cut(s) | 21, 323, 424, 427, 486 |
| FspBI | CTAG | 2 cut(s) | 62, 221 |
| FspI | TGCGCA | 1 cut(s) | 78 |
| GlaI | GCGC | 7 cut(s) | 19, 48, 78, 326, 415, 441, 458 |
| GluI | GCNGC | 5 cut(s) | 21, 323, 424, 427, 486 |
| HaeII | RGCGCY | 2 cut(s) | 328, 417 |
| HaeIII | GGCC | 4 cut(s) | 5, 201, 543, 613 |
| HapII | CCGG | 4 cut(s) | 34, 70, 580, 653 |
| HhaI | GCGC | 7 cut(s) | 20, 49, 79, 327, 416, 442, 459 |
| Hin1II | CATG | 2 cut(s) | 308, 646 |
| Hin6I | GCGC | 7 cut(s) | 18, 47, 77, 325, 414, 440, 457 |
| HinP1I | GCGC | 7 cut(s) | 18, 47, 77, 325, 414, 440, 457 |
| HincII | GTYRAC | 1 cut(s) | 658 |
| HindII | GTYRAC | 1 cut(s) | 658 |
| HinfI | GANTC | 3 cut(s) | 283, 378, 402 |
| HpaII | CCGG | 4 cut(s) | 34, 70, 580, 653 |
| HphI | GGTGA | 4 cut(s) | 78, 128, 229, 268 |
| Hpy166II | GTNNAC | 1 cut(s) | 658 |
| Hpy188I | TCNGA | 1 cut(s) | 473 |
| Hpy188III | TCNNGA | 1 cut(s) | 41 |
| Hpy8I | GTNNAC | 1 cut(s) | 658 |
| Hpy99I | CGWCG | 2 cut(s) | 322, 457 |
| HpyAV | CCTTC | 1 cut(s) | 626 |
| HpyCH4V | TGCA | 2 cut(s) | 270, 650 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 207, 267, 322, 420, 491, 540, 565 |
| HpyF3I | CTNAG | 2 cut(s) | 361, 497 |
| Hsp92II | CATG | 2 cut(s) | 308, 646 |
| HspAI | GCGC | 7 cut(s) | 18, 47, 77, 325, 414, 440, 457 |
| Kzo9I | GATC | 4 cut(s) | 58, 99, 431, 460 |
| LmnI | GCTCC | 5 cut(s) | 25, 340, 391, 421, 520 |
| LpnPI | CCDG | 7 cut(s) | 47, 65, 83, 396, 479, 593, 666 |
| Lsp1109I | GCAGC | 2 cut(s) | 334, 438 |
| LweI | GCATC | 3 cut(s) | 219, 337, 565 |
| MaeI | CTAG | 2 cut(s) | 62, 221 |
| MaeIII | GTNAC | 1 cut(s) | 287 |
| MalI | GATC | 4 cut(s) | 60, 101, 433, 462 |
| MbiI | CCGCTC | 1 cut(s) | 141 |
| MboI | GATC | 4 cut(s) | 58, 99, 431, 460 |
| MboII | GAAGA | 1 cut(s) | 106 |
| MfeI | CAATTG | 1 cut(s) | 129 |
| MflI | RGATCY | 1 cut(s) | 58 |
| MhlI | GDGCHC | 3 cut(s) | 30, 337, 615 |
| MlsI | TGGCCA | 2 cut(s) | 5, 201 |
| MluCI | AATT | 4 cut(s) | 129, 277, 480, 536 |
| MluNI | TGGCCA | 2 cut(s) | 5, 201 |
| MlyI | GAGTC | 1 cut(s) | 277 |
| MnlI | CCTC | 8 cut(s) | 128, 416, 419, 429, 484, 554, 604, 671 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 201 |
| MscI | TGGCCA | 2 cut(s) | 5, 201 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 201 |
| MspI | CCGG | 4 cut(s) | 34, 70, 580, 653 |
| MspR9I | CCNGG | 2 cut(s) | 34, 580 |
| MunI | CAATTG | 1 cut(s) | 129 |
| Mva1269I | GAATGC | 1 cut(s) | 79 |
| MvnI | CGCG | 7 cut(s) | 18, 20, 49, 357, 440, 457, 459 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 207, 267, 322, 420, 491, 540, 565 |
| NciI | CCSGG | 2 cut(s) | 34, 580 |
| NcoI | CCATGG | 1 cut(s) | 304 |
| NdeII | GATC | 4 cut(s) | 58, 99, 431, 460 |
| NlaIII | CATG | 2 cut(s) | 308, 646 |
| NlaIV | GGNNCC | 3 cut(s) | 336, 613, 614 |
| NmeAIII | GCCGAG | 2 cut(s) | 390, 514 |
| NmuCI | GTSAC | 1 cut(s) | 287 |
| NsbI | TGCGCA | 1 cut(s) | 78 |
| NspI | RCATGY | 1 cut(s) | 646 |
| PaeI | GCATGC | 1 cut(s) | 646 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 46, 427 |
| PctI | GAATGC | 1 cut(s) | 79 |
| PfeI | GAWTC | 2 cut(s) | 378, 402 |
| Pfl23II | CGTACG | 1 cut(s) | 570 |
| PinAI | ACCGGT | 1 cut(s) | 652 |
| PkrI | GCNGC | 5 cut(s) | 22, 324, 425, 428, 487 |
| Ple19I | CGATCG | 1 cut(s) | 434 |
| PleI | GAGTC | 1 cut(s) | 277 |
| PpsI | GAGTC | 1 cut(s) | 277 |
| Psp124BI | GAGCTC | 1 cut(s) | 30 |
| PspLI | CGTACG | 1 cut(s) | 570 |
| PspN4I | GGNNCC | 3 cut(s) | 336, 613, 614 |
| PspOMI | GGGCCC | 1 cut(s) | 611 |
| PspPI | GGNCC | 2 cut(s) | 611, 612 |
| PsuI | RGATCY | 1 cut(s) | 58 |
| PvuI | CGATCG | 1 cut(s) | 434 |
| RsaI | GTAC | 1 cut(s) | 572 |
| RsaNI | GTAC | 1 cut(s) | 571 |
| SacI | GAGCTC | 1 cut(s) | 30 |
| SatI | GCNGC | 5 cut(s) | 21, 323, 424, 427, 486 |
| Sau3AI | GATC | 4 cut(s) | 58, 99, 431, 460 |
| Sau96I | GGNCC | 2 cut(s) | 611, 612 |
| SchI | GAGTC | 1 cut(s) | 277 |
| ScrFI | CCNGG | 2 cut(s) | 34, 580 |
| SduI | GDGCHC | 3 cut(s) | 30, 337, 615 |
| SetI | ASST | 7 cut(s) | 30, 67, 84, 185, 510, 596, 663 |
| SfaNI | GCATC | 3 cut(s) | 219, 337, 565 |
| SphI | GCATGC | 1 cut(s) | 646 |
| Sse9I | AATT | 4 cut(s) | 129, 277, 480, 536 |
| SspMI | CTAG | 2 cut(s) | 62, 221 |
| SstI | GAGCTC | 1 cut(s) | 30 |
| StyD4I | CCNGG | 2 cut(s) | 32, 578 |
| StyI | CCWWGG | 1 cut(s) | 304 |
| TaqI | TCGA | 3 cut(s) | 98, 193, 478 |
| TasI | AATT | 4 cut(s) | 129, 277, 480, 536 |
| TauI | GCSGC | 3 cut(s) | 23, 426, 488 |
| TfiI | GAWTC | 2 cut(s) | 378, 402 |
| TseFI | GTSAC | 1 cut(s) | 287 |
| TseI | GCWGC | 2 cut(s) | 322, 426 |
| Tsp45I | GTSAC | 1 cut(s) | 287 |
| TspGWI | ACGGA | 2 cut(s) | 414, 441 |
| XceI | RCATGY | 1 cut(s) | 646 |
| XspI | CTAG | 2 cut(s) | 62, 221 |