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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 571 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 411 |
| Acc16I | TGCGCA | 1 cut(s) | 570 |
| Acc36I | ACCTGC | 1 cut(s) | 571 |
| AccB1I | GGYRCC | 1 cut(s) | 238 |
| AccIII | TCCGGA | 1 cut(s) | 1028 |
| AclWI | GGATC | 2 cut(s) | 26, 680 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AfaI | GTAC | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 200, 271, 993, 994 |
| AgsI | TTSAA | 4 cut(s) | 56, 356, 704, 809 |
| AjnI | CCWGG | 1 cut(s) | 367 |
| AluBI | AGCT | 8 cut(s) | 11, 88, 206, 449, 520, 575, 721, 830 |
| AluI | AGCT | 8 cut(s) | 11, 88, 206, 449, 520, 575, 721, 830 |
| Alw21I | GWGCWC | 2 cut(s) | 13, 451 |
| Alw26I | GTCTC | 2 cut(s) | 170, 822 |
| AlwI | GGATC | 2 cut(s) | 26, 680 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 566 |
| Ama87I | CYCGRG | 1 cut(s) | 314 |
| Aor13HI | TCCGGA | 1 cut(s) | 1028 |
| AoxI | GGCC | 5 cut(s) | 168, 273, 601, 756, 984 |
| ApeKI | GCWGC | 2 cut(s) | 400, 869 |
| AseI | ATTAAT | 1 cut(s) | 546 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 846 |
| AspLEI | GCGC | 9 cut(s) | 437, 439, 541, 571, 864, 866, 944, 950, 956 |
| AspS9I | GGNCC | 6 cut(s) | 169, 413, 693, 757, 959, 985 |
| AsuC2I | CCSGG | 2 cut(s) | 891, 975 |
| AsuHPI | GGTGA | 3 cut(s) | 124, 167, 763 |
| AvaI | CYCGRG | 1 cut(s) | 314 |
| AvaII | GGWCC | 3 cut(s) | 413, 693, 959 |
| AxyI | CCTNAGG | 1 cut(s) | 689 |
| BanI | GGYRCC | 1 cut(s) | 238 |
| BanII | GRGCYC | 4 cut(s) | 13, 150, 451, 718 |
| BbsI | GAAGAC | 1 cut(s) | 165 |
| Bbv12I | GWGCWC | 2 cut(s) | 13, 451 |
| BbvCI | CCTCAGC | 1 cut(s) | 117 |
| BbvI | GCAGC | 2 cut(s) | 412, 856 |
| BccI | CCATC | 5 cut(s) | 137, 251, 318, 386, 997 |
| BceAI | ACGGC | 1 cut(s) | 771 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 6, 40 |
| BciT130I | CCWGG | 1 cut(s) | 369 |
| BclI | TGATCA | 1 cut(s) | 723 |
| BcnI | CCSGG | 2 cut(s) | 891, 975 |
| BcoDI | GTCTC | 2 cut(s) | 170, 822 |
| BfaI | CTAG | 3 cut(s) | 324, 576, 879 |
| BfmI | CTRYAG | 2 cut(s) | 398, 870 |
| BfuAI | ACCTGC | 1 cut(s) | 571 |
| BisI | GCNGC | 9 cut(s) | 237, 273, 276, 401, 475, 601, 867, 870, 1048 |
| BlpI | GCTNAGC | 2 cut(s) | 144, 717 |
| BlsI | GCNGC | 9 cut(s) | 238, 274, 277, 402, 476, 602, 868, 871, 1049 |
| Bme1390I | CCNGG | 3 cut(s) | 369, 891, 975 |
| Bme18I | GGWCC | 3 cut(s) | 413, 693, 959 |
| BmeT110I | CYCGRG | 1 cut(s) | 314 |
| BmgT120I | GGNCC | 6 cut(s) | 169, 413, 693, 757, 959, 985 |
| BmiI | GGNNCC | 7 cut(s) | 222, 228, 240, 363, 695, 777, 961 |
| BmrFI | CCNGG | 3 cut(s) | 369, 891, 975 |
| BmrI | ACTGGG | 1 cut(s) | 733 |
| BmsI | GCATC | 2 cut(s) | 456, 632 |
| BmuI | ACTGGG | 1 cut(s) | 733 |
| BpiI | GAAGAC | 1 cut(s) | 165 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 928, 960 |
| BpmI | CTGGAG | 1 cut(s) | 390 |
| Bpu10I | CCTNAGC | 2 cut(s) | 117, 450 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 144, 717 |
| BpuEI | CTTGAG | 3 cut(s) | 240, 785, 816 |
| BpuMI | CCSGG | 2 cut(s) | 891, 975 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 1 cut(s) | 988 |
| BsaWI | WCCGGW | 2 cut(s) | 223, 1028 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 951, 981 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 200, 271, 993, 994 |
| Bse1I | ACTGG | 2 cut(s) | 92, 739 |
| Bse21I | CCTNAGG | 1 cut(s) | 689 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseAI | TCCGGA | 1 cut(s) | 1028 |
| BseBI | CCWGG | 1 cut(s) | 369 |
| BseDI | CCNNGG | 1 cut(s) | 988 |
| BseGI | GGATG | 2 cut(s) | 397, 623 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 200, 271, 993, 994 |
| BseMII | CTCAG | 7 cut(s) | 108, 135, 464, 483, 489, 731, 833 |
| BseNI | ACTGG | 2 cut(s) | 92, 739 |
| BsePI | GCGCGC | 2 cut(s) | 435, 862 |
| BseRI | GAGGAG | 1 cut(s) | 354 |
| BseX3I | CGGCCG | 1 cut(s) | 273 |
| BseXI | GCAGC | 2 cut(s) | 412, 856 |
| BseYI | CCCAGC | 1 cut(s) | 206 |
| BsgI | GTGCAG | 1 cut(s) | 605 |
| Bsh1285I | CGRYCG | 1 cut(s) | 276 |
| BshFI | GGCC | 5 cut(s) | 170, 275, 603, 758, 986 |
| BshNI | GGYRCC | 1 cut(s) | 238 |
| BsiEI | CGRYCG | 1 cut(s) | 276 |
| BsiHKAI | GWGCWC | 2 cut(s) | 13, 451 |
| BsiHKCI | CYCGRG | 1 cut(s) | 314 |
| BsiSI | CCGG | 5 cut(s) | 113, 224, 891, 975, 1029 |
| BslFI | GGGAC | 2 cut(s) | 248, 677 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 200, 271, 993, 994 |
| BsmAI | GTCTC | 2 cut(s) | 170, 822 |
| BsmFI | GGGAC | 2 cut(s) | 248, 677 |
| BsnI | GGCC | 5 cut(s) | 170, 275, 603, 758, 986 |
| BsoBI | CYCGRG | 1 cut(s) | 314 |
| Bsp1286I | GDGCHC | 4 cut(s) | 13, 150, 451, 718 |
| Bsp13I | TCCGGA | 1 cut(s) | 1028 |
| Bsp143I | GATC | 3 cut(s) | 31, 672, 723 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 144, 717 |
| BspANI | GGCC | 5 cut(s) | 170, 275, 603, 758, 986 |
| BspCNI | CTCAG | 7 cut(s) | 109, 136, 463, 484, 490, 730, 832 |
| BspEI | TCCGGA | 1 cut(s) | 1028 |
| BspLI | GGNNCC | 7 cut(s) | 222, 228, 240, 363, 695, 777, 961 |
| BspMAI | CTGCAG | 2 cut(s) | 402, 874 |
| BspMI | ACCTGC | 1 cut(s) | 571 |
| BspPI | GGATC | 2 cut(s) | 26, 680 |
| BspT107I | GGYRCC | 1 cut(s) | 238 |
| BsrI | ACTGG | 2 cut(s) | 92, 739 |
| BssECI | CCNNGG | 1 cut(s) | 988 |
| BssHII | GCGCGC | 2 cut(s) | 435, 862 |
| BssMI | GATC | 3 cut(s) | 31, 672, 723 |
| BssT1I | CCWWGG | 1 cut(s) | 988 |
| Bst2UI | CCWGG | 1 cut(s) | 369 |
| Bst4CI | ACNGT | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 1 cut(s) | 1027 |
| BstC8I | GCNNGC | 9 cut(s) | 9, 329, 437, 441, 573, 838, 864, 946, 952 |
| BstDEI | CTNAG | 9 cut(s) | 117, 144, 450, 492, 498, 689, 717, 819, 826 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 198 |
| BstF5I | GGATG | 2 cut(s) | 397, 623 |
| BstHHI | GCGC | 9 cut(s) | 437, 439, 541, 571, 864, 866, 944, 950, 956 |
| BstKTI | GATC | 3 cut(s) | 34, 675, 726 |
| BstMAI | GTCTC | 2 cut(s) | 170, 822 |
| BstMBI | GATC | 3 cut(s) | 31, 672, 723 |
| BstMCI | CGRYCG | 1 cut(s) | 276 |
| BstNI | CCWGG | 1 cut(s) | 369 |
| BstNSI | RCATGY | 1 cut(s) | 670 |
| BstSCI | CCNGG | 3 cut(s) | 367, 889, 973 |
| BstSFI | CTRYAG | 2 cut(s) | 398, 870 |
| BstV1I | GCAGC | 2 cut(s) | 412, 856 |
| BstV2I | GAAGAC | 1 cut(s) | 165 |
| BstX2I | RGATCY | 1 cut(s) | 672 |
| BstYI | RGATCY | 1 cut(s) | 672 |
| BstZI | CGGCCG | 1 cut(s) | 273 |
| Bsu36I | CCTNAGG | 1 cut(s) | 689 |
| BsuRI | GGCC | 5 cut(s) | 170, 275, 603, 758, 986 |
| BtgZI | GCGATG | 1 cut(s) | 827 |
| BtsCI | GGATG | 2 cut(s) | 397, 623 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| BveI | ACCTGC | 1 cut(s) | 571 |
| Cac8I | GCNNGC | 9 cut(s) | 9, 329, 437, 441, 573, 838, 864, 946, 952 |
| CaiI | CAGNNNCTG | 1 cut(s) | 566 |
| CciNI | GCGGCCGC | 1 cut(s) | 273 |
| CfoI | GCGC | 9 cut(s) | 437, 439, 541, 571, 864, 866, 944, 950, 956 |
| Cfr13I | GGNCC | 6 cut(s) | 169, 413, 693, 757, 959, 985 |
| CseI | GACGC | 3 cut(s) | 242, 293, 884 |
| Csp6I | GTAC | 1 cut(s) | 350 |
| CviAII | CATG | 2 cut(s) | 163, 667 |
| CviQI | GTAC | 1 cut(s) | 350 |
| DdeI | CTNAG | 9 cut(s) | 117, 144, 450, 492, 498, 689, 717, 819, 826 |
| DpnI | GATC | 3 cut(s) | 33, 674, 725 |
| DpnII | GATC | 3 cut(s) | 31, 672, 723 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 411 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 411 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| EagI | CGGCCG | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 1 cut(s) | 1027 |
| EarI | CTCTTC | 1 cut(s) | 1027 |
| Ecl136II | GAGCTC | 2 cut(s) | 11, 449 |
| EclXI | CGGCCG | 1 cut(s) | 273 |
| Eco130I | CCWWGG | 1 cut(s) | 988 |
| Eco24I | GRGCYC | 4 cut(s) | 13, 150, 451, 718 |
| Eco47I | GGWCC | 3 cut(s) | 413, 693, 959 |
| Eco52I | CGGCCG | 1 cut(s) | 273 |
| Eco53kI | GAGCTC | 2 cut(s) | 11, 449 |
| Eco81I | CCTNAGG | 1 cut(s) | 689 |
| Eco88I | CYCGRG | 1 cut(s) | 314 |
| EcoICRI | GAGCTC | 2 cut(s) | 11, 449 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 198 |
| EcoO109I | RGGNCCY | 1 cut(s) | 693 |
| EcoRII | CCWGG | 1 cut(s) | 367 |
| EcoT14I | CCWWGG | 1 cut(s) | 988 |
| EcoT38I | GRGCYC | 4 cut(s) | 13, 150, 451, 718 |
| ErhI | CCWWGG | 1 cut(s) | 988 |
| FaeI | CATG | 2 cut(s) | 166, 670 |
| FaiI | YATR | 5 cut(s) | 164, 514, 516, 668, 1001 |
| FaqI | GGGAC | 2 cut(s) | 248, 677 |
| FatI | CATG | 2 cut(s) | 162, 666 |
| FauI | CCCGC | 3 cut(s) | 148, 448, 635 |
| FbaI | TGATCA | 1 cut(s) | 723 |
| Fnu4HI | GCNGC | 9 cut(s) | 237, 273, 276, 401, 475, 601, 867, 870, 1048 |
| FokI | GGATG | 2 cut(s) | 404, 610 |
| FriOI | GRGCYC | 4 cut(s) | 13, 150, 451, 718 |
| Fsp4HI | GCNGC | 9 cut(s) | 237, 273, 276, 401, 475, 601, 867, 870, 1048 |
| FspBI | CTAG | 3 cut(s) | 324, 576, 879 |
| FspI | TGCGCA | 1 cut(s) | 570 |
| GlaI | GCGC | 9 cut(s) | 436, 438, 540, 570, 863, 865, 943, 949, 955 |
| GluI | GCNGC | 9 cut(s) | 237, 273, 276, 401, 475, 601, 867, 870, 1048 |
| GsaI | CCCAGC | 1 cut(s) | 210 |
| GsuI | CTGGAG | 1 cut(s) | 390 |
| HaeIII | GGCC | 5 cut(s) | 170, 275, 603, 758, 986 |
| HapII | CCGG | 5 cut(s) | 113, 224, 891, 975, 1029 |
| HgaI | GACGC | 3 cut(s) | 242, 293, 884 |
| HhaI | GCGC | 9 cut(s) | 437, 439, 541, 571, 864, 866, 944, 950, 956 |
| Hin1II | CATG | 2 cut(s) | 166, 670 |
| Hin6I | GCGC | 9 cut(s) | 435, 437, 539, 569, 862, 864, 942, 948, 954 |
| HinP1I | GCGC | 9 cut(s) | 435, 437, 539, 569, 862, 864, 942, 948, 954 |
| HincII | GTYRAC | 1 cut(s) | 283 |
| HindII | GTYRAC | 1 cut(s) | 283 |
| HinfI | GANTC | 6 cut(s) | 59, 372, 589, 632, 937, 1032 |
| HpaII | CCGG | 5 cut(s) | 113, 224, 891, 975, 1029 |
| HphI | GGTGA | 3 cut(s) | 124, 167, 763 |
| Hpy166II | GTNNAC | 1 cut(s) | 283 |
| Hpy188I | TCNGA | 1 cut(s) | 822 |
| Hpy8I | GTNNAC | 1 cut(s) | 283 |
| HpyAV | CCTTC | 1 cut(s) | 1025 |
| HpyCH4III | ACNGT | 1 cut(s) | 52 |
| HpyCH4IV | ACGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 5 cut(s) | 98, 400, 586, 608, 872 |
| HpyF3I | CTNAG | 9 cut(s) | 117, 144, 450, 492, 498, 689, 717, 819, 826 |
| HpySE526I | ACGT | 1 cut(s) | 189 |
| Hsp92II | CATG | 2 cut(s) | 166, 670 |
| HspAI | GCGC | 9 cut(s) | 435, 437, 539, 569, 862, 864, 942, 948, 954 |
| Kpn2I | TCCGGA | 1 cut(s) | 1028 |
| Ksp22I | TGATCA | 1 cut(s) | 723 |
| Kzo9I | GATC | 3 cut(s) | 31, 672, 723 |
| LmnI | GCTCC | 4 cut(s) | 16, 203, 367, 859 |
| Lsp1109I | GCAGC | 2 cut(s) | 412, 856 |
| LweI | GCATC | 2 cut(s) | 456, 632 |
| MaeI | CTAG | 3 cut(s) | 324, 576, 879 |
| MaeII | ACGT | 1 cut(s) | 189 |
| MaeIII | GTNAC | 4 cut(s) | 373, 522, 751, 893 |
| MalI | GATC | 3 cut(s) | 33, 674, 725 |
| MboI | GATC | 3 cut(s) | 31, 672, 723 |
| MboII | GAAGA | 3 cut(s) | 170, 1014, 1017 |
| MflI | RGATCY | 1 cut(s) | 672 |
| MhlI | GDGCHC | 4 cut(s) | 13, 150, 451, 718 |
| MluCI | AATT | 3 cut(s) | 75, 123, 651 |
| MlyI | GAGTC | 6 cut(s) | 68, 381, 583, 626, 946, 1041 |
| MroI | TCCGGA | 1 cut(s) | 1028 |
| MroXI | GAANNNNTTC | 1 cut(s) | 846 |
| MseI | TTAA | 1 cut(s) | 546 |
| MspA1I | CMGCKG | 5 cut(s) | 143, 278, 721, 869, 1047 |
| MspI | CCGG | 5 cut(s) | 113, 224, 891, 975, 1029 |
| MspR9I | CCNGG | 3 cut(s) | 369, 891, 975 |
| MvaI | CCWGG | 1 cut(s) | 369 |
| NciI | CCSGG | 2 cut(s) | 891, 975 |
| NdeII | GATC | 3 cut(s) | 31, 672, 723 |
| NlaIII | CATG | 2 cut(s) | 166, 670 |
| NlaIV | GGNNCC | 7 cut(s) | 222, 228, 240, 363, 695, 777, 961 |
| NmuCI | GTSAC | 2 cut(s) | 373, 751 |
| NotI | GCGGCCGC | 1 cut(s) | 273 |
| NsbI | TGCGCA | 1 cut(s) | 570 |
| NspI | RCATGY | 1 cut(s) | 670 |
| PaeR7I | CTCGAG | 1 cut(s) | 314 |
| PaqCI | CACCTGC | 1 cut(s) | 571 |
| PauI | GCGCGC | 2 cut(s) | 435, 862 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 478 |
| PdmI | GAANNNNTTC | 1 cut(s) | 846 |
| PfoI | TCCNGGA | 1 cut(s) | 367 |
| PkrI | GCNGC | 9 cut(s) | 238, 274, 277, 402, 476, 602, 868, 871, 1049 |
| PleI | GAGTC | 6 cut(s) | 67, 380, 583, 626, 945, 1040 |
| PpsI | GAGTC | 6 cut(s) | 67, 380, 583, 626, 945, 1040 |
| PpuMI | RGGWCCY | 1 cut(s) | 693 |
| PshBI | ATTAAT | 1 cut(s) | 546 |
| Psp124BI | GAGCTC | 2 cut(s) | 13, 451 |
| Psp5II | RGGWCCY | 1 cut(s) | 693 |
| Psp6I | CCWGG | 1 cut(s) | 367 |
| PspFI | CCCAGC | 1 cut(s) | 206 |
| PspGI | CCWGG | 1 cut(s) | 367 |
| PspN4I | GGNNCC | 7 cut(s) | 222, 228, 240, 363, 695, 777, 961 |
| PspPI | GGNCC | 6 cut(s) | 169, 413, 693, 757, 959, 985 |
| PspPPI | RGGWCCY | 1 cut(s) | 693 |
| PstI | CTGCAG | 2 cut(s) | 402, 874 |
| PstNI | CAGNNNCTG | 1 cut(s) | 566 |
| PsuI | RGATCY | 1 cut(s) | 672 |
| PteI | GCGCGC | 2 cut(s) | 435, 862 |
| PvuII | CAGCTG | 1 cut(s) | 721 |
| RsaI | GTAC | 1 cut(s) | 351 |
| RsaNI | GTAC | 1 cut(s) | 350 |
| SacI | GAGCTC | 2 cut(s) | 13, 451 |
| SaqAI | TTAA | 1 cut(s) | 546 |
| SatI | GCNGC | 9 cut(s) | 237, 273, 276, 401, 475, 601, 867, 870, 1048 |
| Sau3AI | GATC | 3 cut(s) | 31, 672, 723 |
| Sau96I | GGNCC | 6 cut(s) | 169, 413, 693, 757, 959, 985 |
| SchI | GAGTC | 6 cut(s) | 68, 381, 583, 626, 946, 1041 |
| ScrFI | CCNGG | 3 cut(s) | 369, 891, 975 |
| SduI | GDGCHC | 4 cut(s) | 13, 150, 451, 718 |
| SfaNI | GCATC | 2 cut(s) | 456, 632 |
| SfcI | CTRYAG | 2 cut(s) | 398, 870 |
| Sfr274I | CTCGAG | 1 cut(s) | 314 |
| SinI | GGWCC | 3 cut(s) | 413, 693, 959 |
| SlaI | CTCGAG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 4 cut(s) | 255, 314, 764, 831 |
| SmoI | CTYRAG | 4 cut(s) | 255, 314, 764, 831 |
| Sse9I | AATT | 3 cut(s) | 75, 123, 651 |
| SspI | AATATT | 1 cut(s) | 458 |
| SspMI | CTAG | 3 cut(s) | 324, 576, 879 |
| SstI | GAGCTC | 2 cut(s) | 13, 451 |
| StyD4I | CCNGG | 3 cut(s) | 367, 889, 973 |
| StyI | CCWWGG | 1 cut(s) | 988 |
| TaaI | ACNGT | 1 cut(s) | 52 |
| TaiI | ACGT | 1 cut(s) | 192 |
| TaqI | TCGA | 4 cut(s) | 315, 507, 850, 886 |
| TasI | AATT | 3 cut(s) | 75, 123, 651 |
| TauI | GCSGC | 7 cut(s) | 239, 275, 278, 477, 603, 869, 1050 |
| Tru1I | TTAA | 1 cut(s) | 546 |
| Tru9I | TTAA | 1 cut(s) | 546 |
| TscAI | CASTG | 1 cut(s) | 496 |
| TseFI | GTSAC | 2 cut(s) | 373, 751 |
| TseI | GCWGC | 2 cut(s) | 400, 869 |
| Tsp45I | GTSAC | 2 cut(s) | 373, 751 |
| TspDTI | ATGAA | 1 cut(s) | 396 |
| TspRI | CASTG | 1 cut(s) | 496 |
| VpaK11BI | GGWCC | 3 cut(s) | 413, 693, 959 |
| VspI | ATTAAT | 1 cut(s) | 546 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 198 |
| XceI | RCATGY | 1 cut(s) | 670 |
| XhoI | CTCGAG | 1 cut(s) | 314 |
| XmnI | GAANNNNTTC | 1 cut(s) | 846 |
| XspI | CTAG | 3 cut(s) | 324, 576, 879 |