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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 486 |
| Acc36I | ACCTGC | 1 cut(s) | 586 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 280 |
| AccII | CGCG | 1 cut(s) | 1196 |
| AccIII | TCCGGA | 1 cut(s) | 26 |
| AciI | CCGC | 6 cut(s) | 38, 540, 695, 778, 1101, 1196 |
| AclWI | GGATC | 3 cut(s) | 158, 244, 912 |
| AcoI | YGGCCR | 3 cut(s) | 54, 61, 1110 |
| AcsI | RAATTY | 1 cut(s) | 461 |
| AcuI | CTGAAG | 3 cut(s) | 489, 888, 1070 |
| AcvI | CACGTG | 1 cut(s) | 457 |
| AcyI | GRCGYC | 2 cut(s) | 483, 1199 |
| AfaI | GTAC | 1 cut(s) | 833 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 26, 59, 280, 784, 951, 1036 |
| AflII | CTTAAG | 1 cut(s) | 217 |
| AgsI | TTSAA | 3 cut(s) | 596, 731, 1079 |
| AjnI | CCWGG | 9 cut(s) | 63, 155, 198, 384, 783, 805, 945, 1112, 1185 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1011, 1043, 1242, 1274 |
| AluBI | AGCT | 6 cut(s) | 527, 692, 824, 895, 1180, 1236 |
| AluI | AGCT | 6 cut(s) | 527, 692, 824, 895, 1180, 1236 |
| Alw26I | GTCTC | 1 cut(s) | 1157 |
| AlwI | GGATC | 3 cut(s) | 158, 244, 912 |
| Ama87I | CYCGRG | 1 cut(s) | 656 |
| Aor13HI | TCCGGA | 1 cut(s) | 26 |
| ApeKI | GCWGC | 7 cut(s) | 4, 68, 245, 248, 1144, 1220, 1223 |
| ApoI | RAATTY | 1 cut(s) | 461 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 771 |
| AspLEI | GCGC | 1 cut(s) | 149 |
| AspS9I | GGNCC | 7 cut(s) | 213, 433, 787, 943, 1090, 1183, 1189 |
| AsuC2I | CCSGG | 3 cut(s) | 53, 431, 913 |
| AsuHPI | GGTGA | 3 cut(s) | 373, 767, 1028 |
| AvaI | CYCGRG | 1 cut(s) | 656 |
| AvaII | GGWCC | 2 cut(s) | 213, 433 |
| AxyI | CCTNAGG | 1 cut(s) | 321 |
| BaeGI | GKGCMC | 1 cut(s) | 967 |
| BalI | TGGCCA | 1 cut(s) | 63 |
| BauI | CACGAG | 1 cut(s) | 357 |
| BbrPI | CACGTG | 1 cut(s) | 457 |
| BbsI | GAAGAC | 3 cut(s) | 114, 183, 876 |
| BbvCI | CCTCAGC | 3 cut(s) | 327, 420, 684 |
| BbvI | GCAGC | 7 cut(s) | 16, 80, 232, 235, 1156, 1207, 1210 |
| BccI | CCATC | 3 cut(s) | 85, 934, 1034 |
| BceAI | ACGGC | 4 cut(s) | 920, 1088, 1125, 1139 |
| BciT130I | CCWGG | 9 cut(s) | 65, 157, 200, 386, 785, 807, 947, 1114, 1187 |
| BcnI | CCSGG | 3 cut(s) | 53, 431, 913 |
| BcoDI | GTCTC | 1 cut(s) | 1157 |
| BfaI | CTAG | 3 cut(s) | 287, 762, 1097 |
| BfrI | CTTAAG | 1 cut(s) | 217 |
| BfuAI | ACCTGC | 1 cut(s) | 586 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 786, 941, 1109, 1196 |
| BisI | GCNGC | 9 cut(s) | 5, 69, 246, 249, 1101, 1145, 1197, 1221, 1224 |
| BlsI | GCNGC | 9 cut(s) | 6, 70, 247, 250, 1102, 1146, 1198, 1222, 1225 |
| Bme18I | GGWCC | 2 cut(s) | 213, 433 |
| BmeT110I | CYCGRG | 1 cut(s) | 656 |
| BmgT120I | GGNCC | 7 cut(s) | 213, 433, 787, 943, 1090, 1183, 1189 |
| BmiI | GGNNCC | 4 cut(s) | 96, 408, 663, 1131 |
| BmsI | GCATC | 2 cut(s) | 748, 1219 |
| BpiI | GAAGAC | 3 cut(s) | 114, 183, 876 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1014, 1046 |
| BpmI | CTGGAG | 3 cut(s) | 273, 765, 1160 |
| Bpu10I | CCTNAGC | 3 cut(s) | 327, 420, 684 |
| BpuEI | CTTGAG | 1 cut(s) | 1063 |
| BpuMI | CCSGG | 3 cut(s) | 53, 431, 913 |
| BsaAI | YACGTR | 1 cut(s) | 457 |
| BsaHI | GRCGYC | 2 cut(s) | 483, 1199 |
| BsaWI | WCCGGW | 3 cut(s) | 26, 547, 628 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1242, 1272 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 26, 59, 280, 784, 951, 1036 |
| Bse1I | ACTGG | 4 cut(s) | 64, 293, 874, 1143 |
| Bse21I | CCTNAGG | 1 cut(s) | 321 |
| BseAI | TCCGGA | 1 cut(s) | 26 |
| BseBI | CCWGG | 9 cut(s) | 65, 157, 200, 386, 785, 807, 947, 1114, 1187 |
| BseGI | GGATG | 2 cut(s) | 1026, 1252 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 26, 59, 280, 784, 951, 1036 |
| BseMII | CTCAG | 5 cut(s) | 129, 312, 318, 411, 698 |
| BseNI | ACTGG | 4 cut(s) | 64, 293, 874, 1143 |
| BseRI | GAGGAG | 4 cut(s) | 103, 270, 533, 1142 |
| BseSI | GKGCMC | 1 cut(s) | 967 |
| BseXI | GCAGC | 7 cut(s) | 16, 80, 232, 235, 1156, 1207, 1210 |
| Bsh1236I | CGCG | 1 cut(s) | 1196 |
| BsiHKCI | CYCGRG | 1 cut(s) | 656 |
| BsiSI | CCGG | 6 cut(s) | 27, 53, 431, 548, 629, 913 |
| BslFI | GGGAC | 5 cut(s) | 388, 623, 1052, 1054, 1186 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 26, 59, 280, 784, 951, 1036 |
| BsmAI | GTCTC | 1 cut(s) | 1157 |
| BsmFI | GGGAC | 5 cut(s) | 388, 623, 1052, 1054, 1186 |
| BsoBI | CYCGRG | 1 cut(s) | 656 |
| Bsp1286I | GDGCHC | 1 cut(s) | 967 |
| Bsp13I | TCCGGA | 1 cut(s) | 26 |
| Bsp143I | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| BspACI | CCGC | 6 cut(s) | 38, 540, 695, 778, 1101, 1196 |
| BspCNI | CTCAG | 5 cut(s) | 128, 313, 319, 412, 697 |
| BspEI | TCCGGA | 1 cut(s) | 26 |
| BspFNI | CGCG | 1 cut(s) | 1196 |
| BspLI | GGNNCC | 4 cut(s) | 96, 408, 663, 1131 |
| BspMI | ACCTGC | 1 cut(s) | 586 |
| BspPI | GGATC | 3 cut(s) | 158, 244, 912 |
| BspTI | CTTAAG | 1 cut(s) | 217 |
| BsrI | ACTGG | 4 cut(s) | 64, 293, 874, 1143 |
| BssMI | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| BssNI | GRCGYC | 2 cut(s) | 483, 1199 |
| BssSI | CACGAG | 1 cut(s) | 357 |
| Bst2BI | CACGAG | 1 cut(s) | 357 |
| Bst2UI | CCWGG | 9 cut(s) | 65, 157, 200, 386, 785, 807, 947, 1114, 1187 |
| Bst4CI | ACNGT | 1 cut(s) | 969 |
| Bst6I | CTCTTC | 2 cut(s) | 271, 465 |
| BstACI | GRCGYC | 2 cut(s) | 483, 1199 |
| BstAFI | CTTAAG | 1 cut(s) | 217 |
| BstBAI | YACGTR | 1 cut(s) | 457 |
| BstDEI | CTNAG | 5 cut(s) | 115, 321, 327, 420, 684 |
| BstDSI | CCRYGG | 1 cut(s) | 167 |
| BstEII | GGTNACC | 1 cut(s) | 424 |
| BstF5I | GGATG | 2 cut(s) | 1026, 1252 |
| BstFNI | CGCG | 1 cut(s) | 1196 |
| BstHHI | GCGC | 1 cut(s) | 149 |
| BstKTI | GATC | 5 cut(s) | 130, 166, 196, 239, 907 |
| BstMAI | GTCTC | 1 cut(s) | 1157 |
| BstMBI | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| BstNI | CCWGG | 9 cut(s) | 65, 157, 200, 386, 785, 807, 947, 1114, 1187 |
| BstNSI | RCATGY | 2 cut(s) | 723, 860 |
| BstPI | GGTNACC | 1 cut(s) | 424 |
| BstSLI | GKGCMC | 1 cut(s) | 967 |
| BstUI | CGCG | 1 cut(s) | 1196 |
| BstV1I | GCAGC | 7 cut(s) | 16, 80, 232, 235, 1156, 1207, 1210 |
| BstV2I | GAAGAC | 3 cut(s) | 114, 183, 876 |
| BstX2I | RGATCY | 1 cut(s) | 904 |
| BstYI | RGATCY | 1 cut(s) | 904 |
| Bsu36I | CCTNAGG | 1 cut(s) | 321 |
| BtgI | CCRYGG | 1 cut(s) | 167 |
| BtsCI | GGATG | 2 cut(s) | 1026, 1252 |
| BtsI | GCAGTG | 2 cut(s) | 414, 612 |
| BtsIMutI | CAGTG | 4 cut(s) | 57, 300, 414, 612 |
| BveI | ACCTGC | 1 cut(s) | 586 |
| CfoI | GCGC | 1 cut(s) | 149 |
| Cfr13I | GGNCC | 7 cut(s) | 213, 433, 787, 943, 1090, 1183, 1189 |
| CseI | GACGC | 1 cut(s) | 1188 |
| Csp6I | GTAC | 1 cut(s) | 832 |
| CviAII | CATG | 5 cut(s) | 587, 720, 857, 923, 1124 |
| CviQI | GTAC | 1 cut(s) | 832 |
| DdeI | CTNAG | 5 cut(s) | 115, 321, 327, 420, 684 |
| DpnI | GATC | 5 cut(s) | 129, 165, 195, 238, 906 |
| DpnII | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| DraI | TTTAAA | 1 cut(s) | 828 |
| EaeI | YGGCCR | 3 cut(s) | 54, 61, 1110 |
| Eam1104I | CTCTTC | 2 cut(s) | 271, 465 |
| EarI | CTCTTC | 2 cut(s) | 271, 465 |
| Eco147I | AGGCCT | 3 cut(s) | 19, 771, 1284 |
| Eco47I | GGWCC | 2 cut(s) | 213, 433 |
| Eco57I | CTGAAG | 3 cut(s) | 489, 888, 1070 |
| Eco72I | CACGTG | 1 cut(s) | 457 |
| Eco81I | CCTNAGG | 1 cut(s) | 321 |
| Eco88I | CYCGRG | 1 cut(s) | 656 |
| Eco91I | GGTNACC | 1 cut(s) | 424 |
| EcoO109I | RGGNCCY | 1 cut(s) | 213 |
| EcoO65I | GGTNACC | 1 cut(s) | 424 |
| EcoRII | CCWGG | 9 cut(s) | 63, 155, 198, 384, 783, 805, 945, 1112, 1185 |
| FaeI | CATG | 5 cut(s) | 590, 723, 860, 926, 1127 |
| FaiI | YATR | 9 cut(s) | 563, 588, 721, 858, 887, 924, 1125, 1161, 1272 |
| FaqI | GGGAC | 5 cut(s) | 388, 623, 1052, 1054, 1186 |
| FatI | CATG | 5 cut(s) | 586, 719, 856, 922, 1123 |
| FauI | CCCGC | 1 cut(s) | 547 |
| Fnu4HI | GCNGC | 9 cut(s) | 5, 69, 246, 249, 1101, 1145, 1197, 1221, 1224 |
| FokI | GGATG | 2 cut(s) | 1013, 1259 |
| Fsp4HI | GCNGC | 9 cut(s) | 5, 69, 246, 249, 1101, 1145, 1197, 1221, 1224 |
| FspBI | CTAG | 3 cut(s) | 287, 762, 1097 |
| GlaI | GCGC | 1 cut(s) | 148 |
| GluI | GCNGC | 9 cut(s) | 5, 69, 246, 249, 1101, 1145, 1197, 1221, 1224 |
| GsuI | CTGGAG | 3 cut(s) | 273, 765, 1160 |
| HapII | CCGG | 6 cut(s) | 27, 53, 431, 548, 629, 913 |
| HgaI | GACGC | 1 cut(s) | 1188 |
| HhaI | GCGC | 1 cut(s) | 149 |
| Hin1I | GRCGYC | 2 cut(s) | 483, 1199 |
| Hin1II | CATG | 5 cut(s) | 590, 723, 860, 926, 1127 |
| Hin6I | GCGC | 1 cut(s) | 147 |
| HinP1I | GCGC | 1 cut(s) | 147 |
| HinfI | GANTC | 6 cut(s) | 110, 401, 451, 535, 736, 1057 |
| HpaII | CCGG | 6 cut(s) | 27, 53, 431, 548, 629, 913 |
| HphI | GGTGA | 3 cut(s) | 373, 767, 1028 |
| Hpy166II | GTNNAC | 2 cut(s) | 362, 1019 |
| Hpy188I | TCNGA | 5 cut(s) | 118, 271, 754, 801, 839 |
| Hpy8I | GTNNAC | 2 cut(s) | 362, 1019 |
| HpyAV | CCTTC | 6 cut(s) | 33, 227, 761, 782, 949, 1094 |
| HpyCH4III | ACNGT | 1 cut(s) | 969 |
| HpyCH4IV | ACGT | 2 cut(s) | 456, 483 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 590, 1274 |
| HpyF3I | CTNAG | 5 cut(s) | 115, 321, 327, 420, 684 |
| HpySE526I | ACGT | 2 cut(s) | 456, 483 |
| Hsp92I | GRCGYC | 2 cut(s) | 483, 1199 |
| Hsp92II | CATG | 5 cut(s) | 590, 723, 860, 926, 1127 |
| HspAI | GCGC | 1 cut(s) | 147 |
| Kpn2I | TCCGGA | 1 cut(s) | 26 |
| Kzo9I | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| LmnI | GCTCC | 5 cut(s) | 94, 667, 697, 1129, 1141 |
| Lsp1109I | GCAGC | 7 cut(s) | 16, 80, 232, 235, 1156, 1207, 1210 |
| LweI | GCATC | 2 cut(s) | 748, 1219 |
| MaeI | CTAG | 3 cut(s) | 287, 762, 1097 |
| MaeII | ACGT | 2 cut(s) | 456, 483 |
| MaeIII | GTNAC | 7 cut(s) | 206, 391, 424, 448, 484, 733, 1105 |
| MalI | GATC | 5 cut(s) | 129, 165, 195, 238, 906 |
| MboI | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| MfeI | CAATTG | 1 cut(s) | 278 |
| MflI | RGATCY | 1 cut(s) | 904 |
| MhlI | GDGCHC | 1 cut(s) | 967 |
| MlsI | TGGCCA | 1 cut(s) | 63 |
| MluCI | AATT | 2 cut(s) | 278, 461 |
| MluNI | TGGCCA | 1 cut(s) | 63 |
| MlyI | GAGTC | 3 cut(s) | 104, 445, 730 |
| Mox20I | TGGCCA | 1 cut(s) | 63 |
| MroI | TCCGGA | 1 cut(s) | 26 |
| MroXI | GAANNNNTTC | 1 cut(s) | 771 |
| MscI | TGGCCA | 1 cut(s) | 63 |
| MseI | TTAA | 2 cut(s) | 218, 827 |
| Msp20I | TGGCCA | 1 cut(s) | 63 |
| MspA1I | CMGCKG | 2 cut(s) | 542, 697 |
| MspCI | CTTAAG | 1 cut(s) | 217 |
| MspI | CCGG | 6 cut(s) | 27, 53, 431, 548, 629, 913 |
| MunI | CAATTG | 1 cut(s) | 278 |
| MvaI | CCWGG | 9 cut(s) | 65, 157, 200, 386, 785, 807, 947, 1114, 1187 |
| MvnI | CGCG | 1 cut(s) | 1196 |
| NciI | CCSGG | 3 cut(s) | 53, 431, 913 |
| NdeII | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| NlaIII | CATG | 5 cut(s) | 590, 723, 860, 926, 1127 |
| NlaIV | GGNNCC | 4 cut(s) | 96, 408, 663, 1131 |
| NmuCI | GTSAC | 4 cut(s) | 206, 448, 484, 733 |
| NspI | RCATGY | 2 cut(s) | 723, 860 |
| PaeI | GCATGC | 1 cut(s) | 860 |
| PaeR7I | CTCGAG | 1 cut(s) | 656 |
| PceI | AGGCCT | 3 cut(s) | 19, 771, 1284 |
| PdmI | GAANNNNTTC | 1 cut(s) | 771 |
| PfeI | GAWTC | 3 cut(s) | 401, 535, 1057 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 280 |
| PkrI | GCNGC | 9 cut(s) | 6, 70, 247, 250, 1102, 1146, 1198, 1222, 1225 |
| PleI | GAGTC | 3 cut(s) | 104, 445, 730 |
| PmaCI | CACGTG | 1 cut(s) | 457 |
| PmlI | CACGTG | 1 cut(s) | 457 |
| PpsI | GAGTC | 3 cut(s) | 104, 445, 730 |
| Ppu21I | YACGTR | 1 cut(s) | 457 |
| PpuMI | RGGWCCY | 1 cut(s) | 213 |
| Psp5II | RGGWCCY | 1 cut(s) | 213 |
| Psp6I | CCWGG | 9 cut(s) | 63, 155, 198, 384, 783, 805, 945, 1112, 1185 |
| PspCI | CACGTG | 1 cut(s) | 457 |
| PspEI | GGTNACC | 1 cut(s) | 424 |
| PspGI | CCWGG | 9 cut(s) | 63, 155, 198, 384, 783, 805, 945, 1112, 1185 |
| PspN4I | GGNNCC | 4 cut(s) | 96, 408, 663, 1131 |
| PspPI | GGNCC | 7 cut(s) | 213, 433, 787, 943, 1090, 1183, 1189 |
| PspPPI | RGGWCCY | 1 cut(s) | 213 |
| PsuI | RGATCY | 1 cut(s) | 904 |
| RsaI | GTAC | 1 cut(s) | 833 |
| RsaNI | GTAC | 1 cut(s) | 832 |
| SaqAI | TTAA | 2 cut(s) | 218, 827 |
| SatI | GCNGC | 9 cut(s) | 5, 69, 246, 249, 1101, 1145, 1197, 1221, 1224 |
| Sau3AI | GATC | 5 cut(s) | 127, 163, 193, 236, 904 |
| Sau96I | GGNCC | 7 cut(s) | 213, 433, 787, 943, 1090, 1183, 1189 |
| SchI | GAGTC | 3 cut(s) | 104, 445, 730 |
| SduI | GDGCHC | 1 cut(s) | 967 |
| SfaNI | GCATC | 2 cut(s) | 748, 1219 |
| Sfr274I | CTCGAG | 1 cut(s) | 656 |
| SinI | GGWCC | 2 cut(s) | 213, 433 |
| SlaI | CTCGAG | 1 cut(s) | 656 |
| SmlI | CTYRAG | 3 cut(s) | 217, 656, 1042 |
| SmoI | CTYRAG | 3 cut(s) | 217, 656, 1042 |
| SphI | GCATGC | 1 cut(s) | 860 |
| Sse9I | AATT | 2 cut(s) | 278, 461 |
| SseBI | AGGCCT | 3 cut(s) | 19, 771, 1284 |
| SsiI | CCGC | 6 cut(s) | 38, 540, 695, 778, 1101, 1196 |
| SspMI | CTAG | 3 cut(s) | 287, 762, 1097 |
| StuI | AGGCCT | 3 cut(s) | 19, 771, 1284 |
| TaaI | ACNGT | 1 cut(s) | 969 |
| TaiI | ACGT | 2 cut(s) | 459, 486 |
| TaqI | TCGA | 4 cut(s) | 105, 516, 531, 657 |
| TasI | AATT | 2 cut(s) | 278, 461 |
| TauI | GCSGC | 2 cut(s) | 1103, 1199 |
| TfiI | GAWTC | 3 cut(s) | 401, 535, 1057 |
| Tru1I | TTAA | 2 cut(s) | 218, 827 |
| Tru9I | TTAA | 2 cut(s) | 218, 827 |
| TscAI | CASTG | 4 cut(s) | 64, 300, 421, 612 |
| TseFI | GTSAC | 4 cut(s) | 206, 448, 484, 733 |
| TseI | GCWGC | 7 cut(s) | 4, 68, 245, 248, 1144, 1220, 1223 |
| Tsp45I | GTSAC | 4 cut(s) | 206, 448, 484, 733 |
| TspDTI | ATGAA | 2 cut(s) | 135, 1263 |
| TspGWI | ACGGA | 3 cut(s) | 127, 156, 1229 |
| TspRI | CASTG | 4 cut(s) | 64, 300, 421, 612 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 280 |
| Vha464I | CTTAAG | 1 cut(s) | 217 |
| VpaK11BI | GGWCC | 2 cut(s) | 213, 433 |
| XapI | RAATTY | 1 cut(s) | 461 |
| XceI | RCATGY | 2 cut(s) | 723, 860 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1240 |
| XhoI | CTCGAG | 1 cut(s) | 656 |
| XmnI | GAANNNNTTC | 1 cut(s) | 771 |
| XspI | CTAG | 3 cut(s) | 287, 762, 1097 |
| ZraI | GACGTC | 1 cut(s) | 484 |