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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 24 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 423 |
| AciI | CCGC | 4 cut(s) | 102, 263, 336, 521 |
| AclWI | GGATC | 1 cut(s) | 196 |
| AcoI | YGGCCR | 1 cut(s) | 123 |
| AcsI | RAATTY | 1 cut(s) | 118 |
| AcyI | GRCGYC | 1 cut(s) | 21 |
| AfaI | GTAC | 2 cut(s) | 14, 500 |
| AfeI | AGCGCT | 1 cut(s) | 229 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 346, 423 |
| AflIII | ACRYGT | 2 cut(s) | 107, 381 |
| AgsI | TTSAA | 1 cut(s) | 251 |
| AjnI | CCWGG | 1 cut(s) | 340 |
| Alw26I | GTCTC | 2 cut(s) | 12, 259 |
| AlwI | GGATC | 1 cut(s) | 196 |
| Aor51HI | AGCGCT | 1 cut(s) | 229 |
| AoxI | GGCC | 1 cut(s) | 123 |
| ApoI | RAATTY | 1 cut(s) | 118 |
| AseI | ATTAAT | 1 cut(s) | 453 |
| AspA2I | CCTAGG | 1 cut(s) | 472 |
| AspLEI | GCGC | 1 cut(s) | 230 |
| AsuHPI | GGTGA | 3 cut(s) | 92, 157, 424 |
| AvrII | CCTAGG | 1 cut(s) | 472 |
| BbsI | GAAGAC | 1 cut(s) | 188 |
| BccI | CCATC | 1 cut(s) | 313 |
| BciT130I | CCWGG | 1 cut(s) | 342 |
| BciVI | GTATCC | 2 cut(s) | 22, 50 |
| BcoDI | GTCTC | 2 cut(s) | 12, 259 |
| BfaI | CTAG | 3 cut(s) | 365, 473, 509 |
| BfoI | RGCGCY | 1 cut(s) | 231 |
| BfuI | GTATCC | 2 cut(s) | 22, 50 |
| BglII | AGATCT | 1 cut(s) | 367 |
| BisI | GCNGC | 1 cut(s) | 102 |
| BlnI | CCTAGG | 1 cut(s) | 472 |
| BlsI | GCNGC | 1 cut(s) | 103 |
| Bme1390I | CCNGG | 1 cut(s) | 342 |
| BmrFI | CCNGG | 1 cut(s) | 342 |
| BmsI | GCATC | 2 cut(s) | 452, 487 |
| BpiI | GAAGAC | 1 cut(s) | 188 |
| Bsa29I | ATCGAT | 1 cut(s) | 460 |
| BsaBI | GATNNNNATC | 1 cut(s) | 161 |
| BsaHI | GRCGYC | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 2 cut(s) | 340, 472 |
| BsaWI | WCCGGW | 1 cut(s) | 501 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 346, 423 |
| Bse1I | ACTGG | 2 cut(s) | 126, 308 |
| Bse8I | GATNNNNATC | 1 cut(s) | 161 |
| BseBI | CCWGG | 1 cut(s) | 342 |
| BseCI | ATCGAT | 1 cut(s) | 460 |
| BseDI | CCNNGG | 2 cut(s) | 340, 472 |
| BseGI | GGATG | 3 cut(s) | 219, 324, 398 |
| BseJI | GATNNNNATC | 1 cut(s) | 161 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 346, 423 |
| BseMII | CTCAG | 1 cut(s) | 261 |
| BseNI | ACTGG | 2 cut(s) | 126, 308 |
| BshFI | GGCC | 1 cut(s) | 125 |
| BshVI | ATCGAT | 1 cut(s) | 460 |
| BsiSI | CCGG | 1 cut(s) | 502 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 346, 423 |
| BsmAI | GTCTC | 2 cut(s) | 12, 259 |
| BsmBI | CGTCTC | 1 cut(s) | 12 |
| BsnI | GGCC | 1 cut(s) | 125 |
| Bsp143I | GATC | 3 cut(s) | 201, 367, 457 |
| BspACI | CCGC | 4 cut(s) | 102, 263, 336, 521 |
| BspANI | GGCC | 1 cut(s) | 125 |
| BspCNI | CTCAG | 1 cut(s) | 262 |
| BspDI | ATCGAT | 1 cut(s) | 460 |
| BspPI | GGATC | 1 cut(s) | 196 |
| BsrI | ACTGG | 2 cut(s) | 126, 308 |
| BssECI | CCNNGG | 2 cut(s) | 340, 472 |
| BssMI | GATC | 3 cut(s) | 201, 367, 457 |
| BssNI | GRCGYC | 1 cut(s) | 21 |
| BssT1I | CCWWGG | 1 cut(s) | 472 |
| Bst2UI | CCWGG | 1 cut(s) | 342 |
| BstACI | GRCGYC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 2 cut(s) | 97, 270 |
| BstEII | GGTNACC | 1 cut(s) | 412 |
| BstF5I | GGATG | 3 cut(s) | 219, 324, 398 |
| BstH2I | RGCGCY | 1 cut(s) | 231 |
| BstHHI | GCGC | 1 cut(s) | 230 |
| BstKTI | GATC | 3 cut(s) | 204, 370, 460 |
| BstMAI | GTCTC | 2 cut(s) | 12, 259 |
| BstMBI | GATC | 3 cut(s) | 201, 367, 457 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 518 |
| BstNI | CCWGG | 1 cut(s) | 342 |
| BstNSI | RCATGY | 2 cut(s) | 111, 385 |
| BstPI | GGTNACC | 1 cut(s) | 412 |
| BstSCI | CCNGG | 1 cut(s) | 340 |
| BstV2I | GAAGAC | 1 cut(s) | 188 |
| BstX2I | RGATCY | 1 cut(s) | 367 |
| BstYI | RGATCY | 1 cut(s) | 367 |
| Bsu15I | ATCGAT | 1 cut(s) | 460 |
| BsuI | GTATCC | 2 cut(s) | 22, 50 |
| BsuRI | GGCC | 1 cut(s) | 125 |
| BsuTUI | ATCGAT | 1 cut(s) | 460 |
| BtsCI | GGATG | 3 cut(s) | 219, 324, 398 |
| BtsI | GCAGTG | 1 cut(s) | 438 |
| BtsIMutI | CAGTG | 1 cut(s) | 438 |
| CfoI | GCGC | 1 cut(s) | 230 |
| ClaI | ATCGAT | 1 cut(s) | 460 |
| Csp6I | GTAC | 2 cut(s) | 13, 499 |
| CviAII | CATG | 2 cut(s) | 108, 382 |
| CviJI | RGCY | 4 cut(s) | 101, 125, 376, 471 |
| CviKI_1 | RGCY | 4 cut(s) | 101, 125, 376, 471 |
| CviQI | GTAC | 2 cut(s) | 13, 499 |
| DdeI | CTNAG | 2 cut(s) | 97, 270 |
| DpnI | GATC | 3 cut(s) | 203, 369, 459 |
| DpnII | GATC | 3 cut(s) | 201, 367, 457 |
| EaeI | YGGCCR | 1 cut(s) | 123 |
| Eco130I | CCWWGG | 1 cut(s) | 472 |
| Eco47III | AGCGCT | 1 cut(s) | 229 |
| Eco91I | GGTNACC | 1 cut(s) | 412 |
| EcoO65I | GGTNACC | 1 cut(s) | 412 |
| EcoRI | GAATTC | 1 cut(s) | 118 |
| EcoRII | CCWGG | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 1 cut(s) | 472 |
| EcoT22I | ATGCAT | 1 cut(s) | 467 |
| ErhI | CCWWGG | 1 cut(s) | 472 |
| Esp3I | CGTCTC | 1 cut(s) | 12 |
| FaeI | CATG | 2 cut(s) | 111, 385 |
| FaiI | YATR | 7 cut(s) | 61, 109, 179, 347, 354, 383, 450 |
| FatI | CATG | 2 cut(s) | 107, 381 |
| Fnu4HI | GCNGC | 1 cut(s) | 102 |
| FokI | GGATG | 3 cut(s) | 206, 331, 385 |
| Fsp4HI | GCNGC | 1 cut(s) | 102 |
| FspBI | CTAG | 3 cut(s) | 365, 473, 509 |
| GlaI | GCGC | 1 cut(s) | 229 |
| GluI | GCNGC | 1 cut(s) | 102 |
| HaeII | RGCGCY | 1 cut(s) | 231 |
| HaeIII | GGCC | 1 cut(s) | 125 |
| HapII | CCGG | 1 cut(s) | 502 |
| HhaI | GCGC | 1 cut(s) | 230 |
| Hin1I | GRCGYC | 1 cut(s) | 21 |
| Hin1II | CATG | 2 cut(s) | 111, 385 |
| Hin6I | GCGC | 1 cut(s) | 228 |
| HinP1I | GCGC | 1 cut(s) | 228 |
| HinfI | GANTC | 2 cut(s) | 47, 505 |
| HpaII | CCGG | 1 cut(s) | 502 |
| HphI | GGTGA | 3 cut(s) | 92, 157, 424 |
| Hpy188I | TCNGA | 3 cut(s) | 201, 271, 310 |
| Hpy188III | TCNNGA | 3 cut(s) | 115, 173, 365 |
| HpyAV | CCTTC | 1 cut(s) | 179 |
| HpyCH4IV | ACGT | 2 cut(s) | 21, 289 |
| HpyCH4V | TGCA | 2 cut(s) | 408, 465 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 518 |
| HpyF3I | CTNAG | 2 cut(s) | 97, 270 |
| HpySE526I | ACGT | 2 cut(s) | 21, 289 |
| Hsp92I | GRCGYC | 1 cut(s) | 21 |
| Hsp92II | CATG | 2 cut(s) | 111, 385 |
| HspAI | GCGC | 1 cut(s) | 228 |
| Kzo9I | GATC | 3 cut(s) | 201, 367, 457 |
| LweI | GCATC | 2 cut(s) | 452, 487 |
| MaeI | CTAG | 3 cut(s) | 365, 473, 509 |
| MaeII | ACGT | 2 cut(s) | 21, 289 |
| MaeIII | GTNAC | 3 cut(s) | 80, 128, 412 |
| MalI | GATC | 3 cut(s) | 203, 369, 459 |
| MboI | GATC | 3 cut(s) | 201, 367, 457 |
| MboII | GAAGA | 2 cut(s) | 188, 293 |
| MflI | RGATCY | 1 cut(s) | 367 |
| MluCI | AATT | 2 cut(s) | 118, 258 |
| MlyI | GAGTC | 1 cut(s) | 514 |
| MnlI | CCTC | 4 cut(s) | 62, 71, 412, 502 |
| Mph1103I | ATGCAT | 1 cut(s) | 467 |
| MseI | TTAA | 4 cut(s) | 234, 378, 434, 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 453 |
| MspI | CCGG | 1 cut(s) | 502 |
| MspR9I | CCNGG | 1 cut(s) | 342 |
| MvaI | CCWGG | 1 cut(s) | 342 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 518 |
| NdeII | GATC | 3 cut(s) | 201, 367, 457 |
| NlaIII | CATG | 2 cut(s) | 111, 385 |
| NmuCI | GTSAC | 2 cut(s) | 80, 412 |
| NsiI | ATGCAT | 1 cut(s) | 467 |
| NspI | RCATGY | 2 cut(s) | 111, 385 |
| PciI | ACATGT | 2 cut(s) | 107, 381 |
| PfeI | GAWTC | 1 cut(s) | 47 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 423 |
| PkrI | GCNGC | 1 cut(s) | 103 |
| PleI | GAGTC | 1 cut(s) | 513 |
| PpsI | GAGTC | 1 cut(s) | 513 |
| PscI | ACATGT | 2 cut(s) | 107, 381 |
| PshBI | ATTAAT | 1 cut(s) | 453 |
| Psp6I | CCWGG | 1 cut(s) | 340 |
| PspEI | GGTNACC | 1 cut(s) | 412 |
| PspGI | CCWGG | 1 cut(s) | 340 |
| PsuI | RGATCY | 1 cut(s) | 367 |
| RsaI | GTAC | 2 cut(s) | 14, 500 |
| RsaNI | GTAC | 2 cut(s) | 13, 499 |
| RseI | CAYNNNNRTG | 1 cut(s) | 453 |
| SaqAI | TTAA | 4 cut(s) | 234, 378, 434, 453 |
| SatI | GCNGC | 1 cut(s) | 102 |
| Sau3AI | GATC | 3 cut(s) | 201, 367, 457 |
| SchI | GAGTC | 1 cut(s) | 514 |
| ScrFI | CCNGG | 1 cut(s) | 342 |
| SetI | ASST | 8 cut(s) | 24, 73, 82, 213, 292, 346, 414, 434 |
| SfaNI | GCATC | 2 cut(s) | 452, 487 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 453 |
| Sse9I | AATT | 2 cut(s) | 118, 258 |
| SsiI | CCGC | 4 cut(s) | 102, 263, 336, 521 |
| SspMI | CTAG | 3 cut(s) | 365, 473, 509 |
| StyD4I | CCNGG | 1 cut(s) | 340 |
| StyI | CCWWGG | 1 cut(s) | 472 |
| TaiI | ACGT | 2 cut(s) | 24, 292 |
| TaqI | TCGA | 4 cut(s) | 76, 174, 239, 460 |
| TaqII | GACCGA | 1 cut(s) | 182 |
| TasI | AATT | 2 cut(s) | 118, 258 |
| TauI | GCSGC | 1 cut(s) | 104 |
| TfiI | GAWTC | 1 cut(s) | 47 |
| Tru1I | TTAA | 4 cut(s) | 234, 378, 434, 453 |
| Tru9I | TTAA | 4 cut(s) | 234, 378, 434, 453 |
| TscAI | CASTG | 1 cut(s) | 445 |
| TseFI | GTSAC | 2 cut(s) | 80, 412 |
| Tsp45I | GTSAC | 2 cut(s) | 80, 412 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 445 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 423 |
| VspI | ATTAAT | 1 cut(s) | 453 |
| XapI | RAATTY | 1 cut(s) | 118 |
| XbaI | TCTAGA | 1 cut(s) | 364 |
| XceI | RCATGY | 2 cut(s) | 111, 385 |
| XmaJI | CCTAGG | 1 cut(s) | 472 |
| XspI | CTAG | 3 cut(s) | 365, 473, 509 |
| ZraI | GACGTC | 1 cut(s) | 22 |
| Zsp2I | ATGCAT | 1 cut(s) | 467 |