Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 880 |
| AccB1I | GGYRCC | 1 cut(s) | 269 |
| AccBSI | CCGCTC | 1 cut(s) | 435 |
| AccII | CGCG | 6 cut(s) | 342, 349, 377, 423, 942, 999 |
| AclWI | GGATC | 4 cut(s) | 111, 366, 907, 920 |
| AcoI | YGGCCR | 2 cut(s) | 302, 966 |
| AcuI | CTGAAG | 1 cut(s) | 475 |
| AfaI | GTAC | 3 cut(s) | 321, 822, 1010 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 219, 425, 554, 824 |
| AflIII | ACRYGT | 1 cut(s) | 879 |
| AgsI | TTSAA | 2 cut(s) | 101, 707 |
| AjnI | CCWGG | 1 cut(s) | 332 |
| AluBI | AGCT | 1 cut(s) | 369 |
| AluI | AGCT | 1 cut(s) | 369 |
| Alw26I | GTCTC | 3 cut(s) | 320, 338, 866 |
| AlwI | GGATC | 4 cut(s) | 111, 366, 907, 920 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| AoxI | GGCC | 9 cut(s) | 157, 205, 221, 302, 541, 609, 780, 886, 966 |
| ApaI | GGGCCC | 1 cut(s) | 161 |
| ApeKI | GCWGC | 2 cut(s) | 56, 446 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 479, 511 |
| AspLEI | GCGC | 2 cut(s) | 166, 629 |
| AspS9I | GGNCC | 6 cut(s) | 157, 158, 222, 610, 781, 887 |
| AsuC2I | CCSGG | 2 cut(s) | 249, 671 |
| AsuHPI | GGTGA | 1 cut(s) | 589 |
| AsuNHI | GCTAGC | 1 cut(s) | 365 |
| BaeGI | GKGCMC | 3 cut(s) | 161, 274, 355 |
| BamHI | GGATCC | 1 cut(s) | 912 |
| BanI | GGYRCC | 1 cut(s) | 269 |
| BanII | GRGCYC | 2 cut(s) | 161, 832 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| BbvI | GCAGC | 2 cut(s) | 43, 433 |
| BccI | CCATC | 8 cut(s) | 150, 288, 420, 542, 548, 557, 645, 981 |
| BceAI | ACGGC | 3 cut(s) | 220, 289, 795 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 38, 61, 72, 95 |
| BciT130I | CCWGG | 1 cut(s) | 334 |
| BcnI | CCSGG | 2 cut(s) | 249, 671 |
| BcoDI | GTCTC | 3 cut(s) | 320, 338, 866 |
| BfaI | CTAG | 2 cut(s) | 366, 824 |
| BfoI | RGCGCY | 2 cut(s) | 167, 630 |
| BisI | GCNGC | 7 cut(s) | 57, 167, 447, 637, 796, 940, 997 |
| BlsI | GCNGC | 7 cut(s) | 58, 168, 448, 638, 797, 941, 998 |
| BmcAI | AGTACT | 2 cut(s) | 822, 1010 |
| Bme1390I | CCNGG | 3 cut(s) | 249, 334, 671 |
| BmgT120I | GGNCC | 6 cut(s) | 157, 158, 222, 610, 781, 887 |
| BmiI | GGNNCC | 7 cut(s) | 6, 159, 271, 640, 829, 889, 914 |
| BmrFI | CCNGG | 3 cut(s) | 249, 334, 671 |
| BmrI | ACTGGG | 1 cut(s) | 164 |
| BmsI | GCATC | 4 cut(s) | 81, 519, 849, 871 |
| BmtI | GCTAGC | 1 cut(s) | 369 |
| BmuI | ACTGGG | 1 cut(s) | 164 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 499, 531 |
| BpuMI | CCSGG | 2 cut(s) | 249, 671 |
| Bsa29I | ATCGAT | 2 cut(s) | 115, 552 |
| BsaI | GGTCTC | 1 cut(s) | 866 |
| BsaJI | CCNNGG | 1 cut(s) | 606 |
| BsaWI | WCCGGW | 2 cut(s) | 149, 322 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 623, 653 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 219, 425, 554, 824 |
| Bse118I | RCCGGY | 1 cut(s) | 964 |
| Bse1I | ACTGG | 5 cut(s) | 159, 230, 544, 760, 818 |
| Bse3DI | GCAATG | 1 cut(s) | 528 |
| BseBI | CCWGG | 1 cut(s) | 334 |
| BseCI | ATCGAT | 2 cut(s) | 115, 552 |
| BseDI | CCNNGG | 1 cut(s) | 606 |
| BseGI | GGATG | 3 cut(s) | 862, 948, 1013 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 219, 425, 554, 824 |
| BseMI | GCAATG | 1 cut(s) | 528 |
| BseNI | ACTGG | 5 cut(s) | 159, 230, 544, 760, 818 |
| BseSI | GKGCMC | 3 cut(s) | 161, 274, 355 |
| BseX3I | CGGCCG | 1 cut(s) | 966 |
| BseXI | GCAGC | 2 cut(s) | 43, 433 |
| BseYI | CCCAGC | 3 cut(s) | 160, 264, 612 |
| BsgI | GTGCAG | 1 cut(s) | 718 |
| Bsh1236I | CGCG | 6 cut(s) | 342, 349, 377, 423, 942, 999 |
| Bsh1285I | CGRYCG | 2 cut(s) | 622, 969 |
| BshFI | GGCC | 9 cut(s) | 159, 207, 223, 304, 543, 611, 782, 888, 968 |
| BshNI | GGYRCC | 1 cut(s) | 269 |
| BshVI | ATCGAT | 2 cut(s) | 115, 552 |
| BsiEI | CGRYCG | 2 cut(s) | 622, 969 |
| BsiSI | CCGG | 5 cut(s) | 150, 249, 323, 670, 965 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 219, 425, 554, 824 |
| BsmAI | GTCTC | 3 cut(s) | 320, 338, 866 |
| BsmBI | CGTCTC | 1 cut(s) | 338 |
| BsmI | GAATGC | 1 cut(s) | 90 |
| BsnI | GGCC | 9 cut(s) | 159, 207, 223, 304, 543, 611, 782, 888, 968 |
| Bso31I | GGTCTC | 1 cut(s) | 866 |
| Bsp120I | GGGCCC | 1 cut(s) | 157 |
| Bsp1286I | GDGCHC | 4 cut(s) | 161, 274, 355, 832 |
| Bsp143I | GATC | 4 cut(s) | 116, 358, 912, 970 |
| Bsp19I | CCATGG | 1 cut(s) | 606 |
| Bsp68I | TCGCGA | 1 cut(s) | 342 |
| BspANI | GGCC | 9 cut(s) | 159, 207, 223, 304, 543, 611, 782, 888, 968 |
| BspDI | ATCGAT | 2 cut(s) | 115, 552 |
| BspFNI | CGCG | 6 cut(s) | 342, 349, 377, 423, 942, 999 |
| BspLI | GGNNCC | 7 cut(s) | 6, 159, 271, 640, 829, 889, 914 |
| BspOI | GCTAGC | 1 cut(s) | 369 |
| BspPI | GGATC | 4 cut(s) | 111, 366, 907, 920 |
| BspT107I | GGYRCC | 1 cut(s) | 269 |
| BspTNI | GGTCTC | 1 cut(s) | 866 |
| BsrBI | CCGCTC | 1 cut(s) | 435 |
| BsrDI | GCAATG | 1 cut(s) | 528 |
| BsrFI | RCCGGY | 1 cut(s) | 964 |
| BsrI | ACTGG | 5 cut(s) | 159, 230, 544, 760, 818 |
| BssAI | RCCGGY | 1 cut(s) | 964 |
| BssECI | CCNNGG | 1 cut(s) | 606 |
| BssMI | GATC | 4 cut(s) | 116, 358, 912, 970 |
| BssT1I | CCWWGG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 1 cut(s) | 334 |
| Bst4CI | ACNGT | 1 cut(s) | 620 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 745 |
| BstC8I | GCNNGC | 4 cut(s) | 351, 367, 437, 545 |
| BstDEI | CTNAG | 2 cut(s) | 772, 979 |
| BstDSI | CCRYGG | 1 cut(s) | 606 |
| BstF5I | GGATG | 3 cut(s) | 862, 948, 1013 |
| BstFNI | CGCG | 6 cut(s) | 342, 349, 377, 423, 942, 999 |
| BstH2I | RGCGCY | 2 cut(s) | 167, 630 |
| BstHHI | GCGC | 2 cut(s) | 166, 629 |
| BstKTI | GATC | 4 cut(s) | 119, 361, 915, 973 |
| BstMAI | GTCTC | 3 cut(s) | 320, 338, 866 |
| BstMBI | GATC | 4 cut(s) | 116, 358, 912, 970 |
| BstMCI | CGRYCG | 2 cut(s) | 622, 969 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 633 |
| BstNI | CCWGG | 1 cut(s) | 334 |
| BstNSI | RCATGY | 2 cut(s) | 844, 883 |
| BstSCI | CCNGG | 3 cut(s) | 247, 332, 669 |
| BstSLI | GKGCMC | 3 cut(s) | 161, 274, 355 |
| BstUI | CGCG | 6 cut(s) | 342, 349, 377, 423, 942, 999 |
| BstV1I | GCAGC | 2 cut(s) | 43, 433 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BstX2I | RGATCY | 2 cut(s) | 358, 912 |
| BstYI | RGATCY | 2 cut(s) | 358, 912 |
| BstZI | CGGCCG | 1 cut(s) | 966 |
| Bsu15I | ATCGAT | 2 cut(s) | 115, 552 |
| BsuRI | GGCC | 9 cut(s) | 159, 207, 223, 304, 543, 611, 782, 888, 968 |
| BsuTUI | ATCGAT | 2 cut(s) | 115, 552 |
| BtgI | CCRYGG | 1 cut(s) | 606 |
| BtgZI | GCGATG | 2 cut(s) | 664, 957 |
| BtsCI | GGATG | 3 cut(s) | 862, 948, 1013 |
| BtsIMutI | CAGTG | 1 cut(s) | 537 |
| BtuMI | TCGCGA | 1 cut(s) | 342 |
| Cac8I | GCNNGC | 4 cut(s) | 351, 367, 437, 545 |
| CfoI | GCGC | 2 cut(s) | 166, 629 |
| Cfr10I | RCCGGY | 1 cut(s) | 964 |
| Cfr13I | GGNCC | 6 cut(s) | 157, 158, 222, 610, 781, 887 |
| ClaI | ATCGAT | 2 cut(s) | 115, 552 |
| CseI | GACGC | 2 cut(s) | 197, 355 |
| Csp6I | GTAC | 3 cut(s) | 320, 821, 1009 |
| CviAII | CATG | 4 cut(s) | 572, 607, 841, 880 |
| CviQI | GTAC | 3 cut(s) | 320, 821, 1009 |
| DdeI | CTNAG | 2 cut(s) | 772, 979 |
| DpnI | GATC | 4 cut(s) | 118, 360, 914, 972 |
| DpnII | GATC | 4 cut(s) | 116, 358, 912, 970 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 880 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 880 |
| EaeI | YGGCCR | 2 cut(s) | 302, 966 |
| EagI | CGGCCG | 1 cut(s) | 966 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 745 |
| EarI | CTCTTC | 2 cut(s) | 33, 745 |
| EciI | GGCGGA | 1 cut(s) | 926 |
| EclXI | CGGCCG | 1 cut(s) | 966 |
| Eco130I | CCWWGG | 1 cut(s) | 606 |
| Eco24I | GRGCYC | 2 cut(s) | 161, 832 |
| Eco31I | GGTCTC | 1 cut(s) | 866 |
| Eco32I | GATATC | 1 cut(s) | 526 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco52I | CGGCCG | 1 cut(s) | 966 |
| Eco57I | CTGAAG | 1 cut(s) | 475 |
| EcoRII | CCWGG | 1 cut(s) | 332 |
| EcoRV | GATATC | 1 cut(s) | 526 |
| EcoT14I | CCWWGG | 1 cut(s) | 606 |
| EcoT22I | ATGCAT | 1 cut(s) | 864 |
| EcoT38I | GRGCYC | 2 cut(s) | 161, 832 |
| ErhI | CCWWGG | 1 cut(s) | 606 |
| Esp3I | CGTCTC | 1 cut(s) | 338 |
| FaeI | CATG | 4 cut(s) | 575, 610, 844, 883 |
| FaiI | YATR | 8 cut(s) | 202, 393, 567, 573, 608, 728, 842, 881 |
| FatI | CATG | 4 cut(s) | 571, 606, 840, 879 |
| FauI | CCCGC | 2 cut(s) | 342, 960 |
| Fnu4HI | GCNGC | 7 cut(s) | 57, 167, 447, 637, 796, 940, 997 |
| FokI | GGATG | 3 cut(s) | 849, 935, 1000 |
| FriOI | GRGCYC | 2 cut(s) | 161, 832 |
| Fsp4HI | GCNGC | 7 cut(s) | 57, 167, 447, 637, 796, 940, 997 |
| FspBI | CTAG | 2 cut(s) | 366, 824 |
| GlaI | GCGC | 2 cut(s) | 165, 628 |
| GluI | GCNGC | 7 cut(s) | 57, 167, 447, 637, 796, 940, 997 |
| GsaI | CCCAGC | 3 cut(s) | 164, 268, 616 |
| HaeII | RGCGCY | 2 cut(s) | 167, 630 |
| HaeIII | GGCC | 9 cut(s) | 159, 207, 223, 304, 543, 611, 782, 888, 968 |
| HapII | CCGG | 5 cut(s) | 150, 249, 323, 670, 965 |
| HgaI | GACGC | 2 cut(s) | 197, 355 |
| HhaI | GCGC | 2 cut(s) | 166, 629 |
| Hin1II | CATG | 4 cut(s) | 575, 610, 844, 883 |
| Hin6I | GCGC | 2 cut(s) | 164, 627 |
| HinP1I | GCGC | 2 cut(s) | 164, 627 |
| HincII | GTYRAC | 1 cut(s) | 592 |
| HindII | GTYRAC | 1 cut(s) | 592 |
| HinfI | GANTC | 3 cut(s) | 244, 384, 584 |
| HpaII | CCGG | 5 cut(s) | 150, 249, 323, 670, 965 |
| HphI | GGTGA | 1 cut(s) | 589 |
| Hpy166II | GTNNAC | 2 cut(s) | 320, 592 |
| Hpy188I | TCNGA | 4 cut(s) | 139, 239, 494, 1028 |
| Hpy188III | TCNNGA | 6 cut(s) | 341, 463, 704, 895, 910, 916 |
| Hpy8I | GTNNAC | 2 cut(s) | 320, 592 |
| Hpy99I | CGWCG | 2 cut(s) | 222, 859 |
| HpyAV | CCTTC | 4 cut(s) | 137, 234, 374, 901 |
| HpyCH4III | ACNGT | 1 cut(s) | 620 |
| HpyCH4V | TGCA | 3 cut(s) | 571, 735, 862 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 633 |
| HpyF3I | CTNAG | 2 cut(s) | 772, 979 |
| Hsp92II | CATG | 4 cut(s) | 575, 610, 844, 883 |
| HspAI | GCGC | 2 cut(s) | 164, 627 |
| Kzo9I | GATC | 4 cut(s) | 116, 358, 912, 970 |
| LmnI | GCTCC | 4 cut(s) | 10, 129, 644, 827 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 433 |
| LweI | GCATC | 4 cut(s) | 81, 519, 849, 871 |
| MaeI | CTAG | 2 cut(s) | 366, 824 |
| MaeIII | GTNAC | 3 cut(s) | 775, 843, 920 |
| MalI | GATC | 4 cut(s) | 118, 360, 914, 972 |
| MbiI | CCGCTC | 1 cut(s) | 435 |
| MboI | GATC | 4 cut(s) | 116, 358, 912, 970 |
| MboII | GAAGA | 5 cut(s) | 50, 89, 407, 732, 925 |
| MfeI | CAATTG | 1 cut(s) | 298 |
| MflI | RGATCY | 2 cut(s) | 358, 912 |
| MhlI | GDGCHC | 4 cut(s) | 161, 274, 355, 832 |
| MluCI | AATT | 2 cut(s) | 298, 693 |
| MlyI | GAGTC | 1 cut(s) | 238 |
| MmeI | TCCRAC | 2 cut(s) | 162, 501 |
| Mph1103I | ATGCAT | 1 cut(s) | 864 |
| MseI | TTAA | 1 cut(s) | 44 |
| MspA1I | CMGCKG | 2 cut(s) | 636, 690 |
| MspI | CCGG | 5 cut(s) | 150, 249, 323, 670, 965 |
| MspR9I | CCNGG | 3 cut(s) | 249, 334, 671 |
| MunI | CAATTG | 1 cut(s) | 298 |
| Mva1269I | GAATGC | 1 cut(s) | 90 |
| MvaI | CCWGG | 1 cut(s) | 334 |
| MvnI | CGCG | 6 cut(s) | 342, 349, 377, 423, 942, 999 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 633 |
| NciI | CCSGG | 2 cut(s) | 249, 671 |
| NcoI | CCATGG | 1 cut(s) | 606 |
| NdeII | GATC | 4 cut(s) | 116, 358, 912, 970 |
| NheI | GCTAGC | 1 cut(s) | 365 |
| NlaIII | CATG | 4 cut(s) | 575, 610, 844, 883 |
| NlaIV | GGNNCC | 7 cut(s) | 6, 159, 271, 640, 829, 889, 914 |
| NmuCI | GTSAC | 1 cut(s) | 775 |
| NruI | TCGCGA | 1 cut(s) | 342 |
| NsiI | ATGCAT | 1 cut(s) | 864 |
| NspI | RCATGY | 2 cut(s) | 844, 883 |
| PciI | ACATGT | 1 cut(s) | 879 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PctI | GAATGC | 1 cut(s) | 90 |
| PfeI | GAWTC | 2 cut(s) | 384, 584 |
| PfoI | TCCNGGA | 1 cut(s) | 247 |
| PkrI | GCNGC | 7 cut(s) | 58, 168, 448, 638, 797, 941, 998 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| PscI | ACATGT | 1 cut(s) | 879 |
| Psp6I | CCWGG | 1 cut(s) | 332 |
| PspFI | CCCAGC | 3 cut(s) | 160, 264, 612 |
| PspGI | CCWGG | 1 cut(s) | 332 |
| PspN4I | GGNNCC | 7 cut(s) | 6, 159, 271, 640, 829, 889, 914 |
| PspOMI | GGGCCC | 1 cut(s) | 157 |
| PspPI | GGNCC | 6 cut(s) | 157, 158, 222, 610, 781, 887 |
| PsuI | RGATCY | 2 cut(s) | 358, 912 |
| RruI | TCGCGA | 1 cut(s) | 342 |
| RsaI | GTAC | 3 cut(s) | 321, 822, 1010 |
| RsaNI | GTAC | 3 cut(s) | 320, 821, 1009 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 7 cut(s) | 57, 167, 447, 637, 796, 940, 997 |
| Sau3AI | GATC | 4 cut(s) | 116, 358, 912, 970 |
| Sau96I | GGNCC | 6 cut(s) | 157, 158, 222, 610, 781, 887 |
| ScaI | AGTACT | 2 cut(s) | 822, 1010 |
| SchI | GAGTC | 1 cut(s) | 238 |
| ScrFI | CCNGG | 3 cut(s) | 249, 334, 671 |
| SduI | GDGCHC | 4 cut(s) | 161, 274, 355, 832 |
| SetI | ASST | 7 cut(s) | 107, 371, 405, 565, 602, 740, 985 |
| SfaNI | GCATC | 4 cut(s) | 81, 519, 849, 871 |
| Sse9I | AATT | 2 cut(s) | 298, 693 |
| SspI | AATATT | 1 cut(s) | 710 |
| SspMI | CTAG | 2 cut(s) | 366, 824 |
| StyD4I | CCNGG | 3 cut(s) | 247, 332, 669 |
| StyI | CCWWGG | 1 cut(s) | 606 |
| TaaI | ACNGT | 1 cut(s) | 620 |
| TaqI | TCGA | 7 cut(s) | 27, 115, 283, 464, 552, 602, 985 |
| TasI | AATT | 2 cut(s) | 298, 693 |
| TatI | WGTACW | 2 cut(s) | 820, 1008 |
| TauI | GCSGC | 5 cut(s) | 169, 639, 798, 942, 999 |
| TfiI | GAWTC | 2 cut(s) | 384, 584 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 1 cut(s) | 544 |
| TseFI | GTSAC | 1 cut(s) | 775 |
| TseI | GCWGC | 2 cut(s) | 56, 446 |
| Tsp45I | GTSAC | 1 cut(s) | 775 |
| TspDTI | ATGAA | 2 cut(s) | 101, 715 |
| TspGWI | ACGGA | 2 cut(s) | 206, 577 |
| TspRI | CASTG | 1 cut(s) | 544 |
| XceI | RCATGY | 2 cut(s) | 844, 883 |
| XspI | CTAG | 2 cut(s) | 366, 824 |
| ZrmI | AGTACT | 2 cut(s) | 822, 1010 |
| Zsp2I | ATGCAT | 1 cut(s) | 864 |