Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 398 |
| AccII | CGCG | 4 cut(s) | 577, 597, 776, 778 |
| AciI | CCGC | 6 cut(s) | 196, 350, 420, 595, 790, 793 |
| AclWI | GGATC | 1 cut(s) | 345 |
| AcuI | CTGAAG | 3 cut(s) | 77, 217, 267 |
| AcyI | GRCGYC | 1 cut(s) | 32 |
| AfaI | GTAC | 1 cut(s) | 683 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 86, 150, 151, 270 |
| AgsI | TTSAA | 3 cut(s) | 386, 460, 734 |
| AjnI | CCWGG | 1 cut(s) | 699 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 257, 289 |
| AluBI | AGCT | 1 cut(s) | 847 |
| AluI | AGCT | 1 cut(s) | 847 |
| Alw21I | GWGCWC | 1 cut(s) | 849 |
| AlwI | GGATC | 1 cut(s) | 345 |
| AoxI | GGCC | 5 cut(s) | 88, 244, 278, 547, 592 |
| ApeKI | GCWGC | 3 cut(s) | 422, 490, 517 |
| AspLEI | GCGC | 4 cut(s) | 252, 599, 778, 780 |
| AspS9I | GGNCC | 2 cut(s) | 219, 244 |
| AsuHPI | GGTGA | 1 cut(s) | 402 |
| AvaII | GGWCC | 1 cut(s) | 219 |
| BanI | GGYRCC | 1 cut(s) | 398 |
| BanII | GRGCYC | 1 cut(s) | 849 |
| BbsI | GAAGAC | 2 cut(s) | 176, 300 |
| Bbv12I | GWGCWC | 1 cut(s) | 849 |
| BbvI | GCAGC | 3 cut(s) | 409, 477, 504 |
| BccI | CCATC | 1 cut(s) | 806 |
| BceAI | ACGGC | 1 cut(s) | 840 |
| BciT130I | CCWGG | 1 cut(s) | 701 |
| BclI | TGATCA | 1 cut(s) | 112 |
| BfaI | CTAG | 3 cut(s) | 201, 416, 507 |
| BfoI | RGCGCY | 1 cut(s) | 253 |
| BglII | AGATCT | 2 cut(s) | 331, 611 |
| BisI | GCNGC | 7 cut(s) | 196, 420, 423, 491, 518, 595, 793 |
| BlsI | GCNGC | 7 cut(s) | 197, 421, 424, 492, 519, 596, 794 |
| BmcAI | AGTACT | 1 cut(s) | 683 |
| Bme1390I | CCNGG | 1 cut(s) | 701 |
| Bme18I | GGWCC | 1 cut(s) | 219 |
| BmgT120I | GGNCC | 2 cut(s) | 219, 244 |
| BmiI | GGNNCC | 5 cut(s) | 157, 221, 245, 400, 743 |
| BmrFI | CCNGG | 1 cut(s) | 701 |
| BmrI | ACTGGG | 1 cut(s) | 744 |
| BmsI | GCATC | 3 cut(s) | 154, 366, 547 |
| BmuI | ACTGGG | 1 cut(s) | 744 |
| BpiI | GAAGAC | 2 cut(s) | 176, 300 |
| BpmI | CTGGAG | 1 cut(s) | 698 |
| BsaBI | GATNNNNATC | 1 cut(s) | 336 |
| BsaHI | GRCGYC | 1 cut(s) | 32 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 86, 150, 151, 270 |
| Bse118I | RCCGGY | 1 cut(s) | 659 |
| Bse1I | ACTGG | 3 cut(s) | 206, 689, 750 |
| Bse3DI | GCAATG | 1 cut(s) | 666 |
| Bse8I | GATNNNNATC | 1 cut(s) | 336 |
| BseBI | CCWGG | 1 cut(s) | 701 |
| BseGI | GGATG | 1 cut(s) | 357 |
| BseJI | GATNNNNATC | 1 cut(s) | 336 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 86, 150, 151, 270 |
| BseMI | GCAATG | 1 cut(s) | 666 |
| BseMII | CTCAG | 1 cut(s) | 708 |
| BseNI | ACTGG | 3 cut(s) | 206, 689, 750 |
| BsePI | GCGCGC | 1 cut(s) | 776 |
| BseXI | GCAGC | 3 cut(s) | 409, 477, 504 |
| Bsh1236I | CGCG | 4 cut(s) | 577, 597, 776, 778 |
| BshFI | GGCC | 5 cut(s) | 90, 246, 280, 549, 594 |
| BshNI | GGYRCC | 1 cut(s) | 398 |
| BsiHKAI | GWGCWC | 1 cut(s) | 849 |
| BsiSI | CCGG | 1 cut(s) | 660 |
| BslFI | GGGAC | 2 cut(s) | 19, 597 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 86, 150, 151, 270 |
| BsmFI | GGGAC | 2 cut(s) | 19, 597 |
| BsmI | GAATGC | 1 cut(s) | 352 |
| BsnI | GGCC | 5 cut(s) | 90, 246, 280, 549, 594 |
| Bsp1286I | GDGCHC | 1 cut(s) | 849 |
| Bsp143I | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| Bsp68I | TCGCGA | 1 cut(s) | 577 |
| BspACI | CCGC | 6 cut(s) | 196, 350, 420, 595, 790, 793 |
| BspANI | GGCC | 5 cut(s) | 90, 246, 280, 549, 594 |
| BspCNI | CTCAG | 1 cut(s) | 707 |
| BspFNI | CGCG | 4 cut(s) | 577, 597, 776, 778 |
| BspLI | GGNNCC | 5 cut(s) | 157, 221, 245, 400, 743 |
| BspPI | GGATC | 1 cut(s) | 345 |
| BspT107I | GGYRCC | 1 cut(s) | 398 |
| BsrDI | GCAATG | 1 cut(s) | 666 |
| BsrFI | RCCGGY | 1 cut(s) | 659 |
| BsrI | ACTGG | 3 cut(s) | 206, 689, 750 |
| BssAI | RCCGGY | 1 cut(s) | 659 |
| BssHII | GCGCGC | 1 cut(s) | 776 |
| BssMI | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| BssNI | GRCGYC | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 1 cut(s) | 701 |
| Bst4CI | ACNGT | 2 cut(s) | 182, 398 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 114 |
| BstACI | GRCGYC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 5 cut(s) | 248, 254, 592, 778, 871 |
| BstDEI | CTNAG | 1 cut(s) | 694 |
| BstF5I | GGATG | 1 cut(s) | 357 |
| BstFNI | CGCG | 4 cut(s) | 577, 597, 776, 778 |
| BstH2I | RGCGCY | 1 cut(s) | 253 |
| BstHHI | GCGC | 4 cut(s) | 252, 599, 778, 780 |
| BstKTI | GATC | 5 cut(s) | 115, 334, 340, 376, 614 |
| BstMBI | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 243, 541, 596, 782, 879 |
| BstNI | CCWGG | 1 cut(s) | 701 |
| BstSCI | CCNGG | 1 cut(s) | 699 |
| BstUI | CGCG | 4 cut(s) | 577, 597, 776, 778 |
| BstV1I | GCAGC | 3 cut(s) | 409, 477, 504 |
| BstV2I | GAAGAC | 2 cut(s) | 176, 300 |
| BstX2I | RGATCY | 2 cut(s) | 331, 611 |
| BstYI | RGATCY | 2 cut(s) | 331, 611 |
| BsuRI | GGCC | 5 cut(s) | 90, 246, 280, 549, 594 |
| BtsCI | GGATG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 2 cut(s) | 291, 757 |
| BtuMI | TCGCGA | 1 cut(s) | 577 |
| Cac8I | GCNNGC | 5 cut(s) | 248, 254, 592, 778, 871 |
| CfoI | GCGC | 4 cut(s) | 252, 599, 778, 780 |
| Cfr10I | RCCGGY | 1 cut(s) | 659 |
| Cfr13I | GGNCC | 2 cut(s) | 219, 244 |
| CseI | GACGC | 1 cut(s) | 21 |
| CsiI | ACCWGGT | 1 cut(s) | 699 |
| Csp6I | GTAC | 1 cut(s) | 682 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 44, 79 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviQI | GTAC | 1 cut(s) | 682 |
| DdeI | CTNAG | 1 cut(s) | 694 |
| DpnI | GATC | 5 cut(s) | 114, 333, 339, 375, 613 |
| DpnII | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 114 |
| EarI | CTCTTC | 2 cut(s) | 65, 114 |
| EciI | GGCGGA | 1 cut(s) | 779 |
| Ecl136II | GAGCTC | 1 cut(s) | 847 |
| Eco24I | GRGCYC | 1 cut(s) | 849 |
| Eco47I | GGWCC | 1 cut(s) | 219 |
| Eco53kI | GAGCTC | 1 cut(s) | 847 |
| Eco57I | CTGAAG | 3 cut(s) | 77, 217, 267 |
| EcoICRI | GAGCTC | 1 cut(s) | 847 |
| EcoO109I | RGGNCCY | 1 cut(s) | 219 |
| EcoRII | CCWGG | 1 cut(s) | 699 |
| EcoT38I | GRGCYC | 1 cut(s) | 849 |
| FaeI | CATG | 1 cut(s) | 149 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 285, 317 |
| FaqI | GGGAC | 2 cut(s) | 19, 597 |
| FatI | CATG | 1 cut(s) | 145 |
| FbaI | TGATCA | 1 cut(s) | 112 |
| Fnu4HI | GCNGC | 7 cut(s) | 196, 420, 423, 491, 518, 595, 793 |
| FokI | GGATG | 1 cut(s) | 344 |
| FriOI | GRGCYC | 1 cut(s) | 849 |
| Fsp4HI | GCNGC | 7 cut(s) | 196, 420, 423, 491, 518, 595, 793 |
| FspBI | CTAG | 3 cut(s) | 201, 416, 507 |
| GlaI | GCGC | 4 cut(s) | 251, 598, 777, 779 |
| GluI | GCNGC | 7 cut(s) | 196, 420, 423, 491, 518, 595, 793 |
| GsuI | CTGGAG | 1 cut(s) | 698 |
| HaeII | RGCGCY | 1 cut(s) | 253 |
| HaeIII | GGCC | 5 cut(s) | 90, 246, 280, 549, 594 |
| HapII | CCGG | 1 cut(s) | 660 |
| HgaI | GACGC | 1 cut(s) | 21 |
| HhaI | GCGC | 4 cut(s) | 252, 599, 778, 780 |
| Hin1I | GRCGYC | 1 cut(s) | 32 |
| Hin1II | CATG | 1 cut(s) | 149 |
| Hin6I | GCGC | 4 cut(s) | 250, 597, 776, 778 |
| HinP1I | GCGC | 4 cut(s) | 250, 597, 776, 778 |
| HpaII | CCGG | 1 cut(s) | 660 |
| HphI | GGTGA | 1 cut(s) | 402 |
| Hpy166II | GTNNAC | 1 cut(s) | 66 |
| Hpy188I | TCNGA | 7 cut(s) | 96, 215, 323, 467, 621, 697, 811 |
| Hpy188III | TCNNGA | 6 cut(s) | 116, 314, 335, 436, 576, 677 |
| Hpy8I | GTNNAC | 1 cut(s) | 66 |
| Hpy99I | CGWCG | 1 cut(s) | 29 |
| HpyAV | CCTTC | 5 cut(s) | 101, 210, 291, 466, 582 |
| HpyCH4III | ACNGT | 2 cut(s) | 182, 398 |
| HpyCH4IV | ACGT | 1 cut(s) | 498 |
| HpyCH4V | TGCA | 2 cut(s) | 544, 560 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 243, 541, 596, 782, 879 |
| HpyF3I | CTNAG | 1 cut(s) | 694 |
| HpySE526I | ACGT | 1 cut(s) | 498 |
| Hsp92I | GRCGYC | 1 cut(s) | 32 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| HspAI | GCGC | 4 cut(s) | 250, 597, 776, 778 |
| Ksp22I | TGATCA | 1 cut(s) | 112 |
| Kzo9I | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| Lsp1109I | GCAGC | 3 cut(s) | 409, 477, 504 |
| LweI | GCATC | 3 cut(s) | 154, 366, 547 |
| MabI | ACCWGGT | 1 cut(s) | 699 |
| MaeI | CTAG | 3 cut(s) | 201, 416, 507 |
| MaeII | ACGT | 1 cut(s) | 498 |
| MaeIII | GTNAC | 1 cut(s) | 876 |
| MalI | GATC | 5 cut(s) | 114, 333, 339, 375, 613 |
| MboI | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| MboII | GAAGA | 8 cut(s) | 42, 82, 109, 131, 146, 173, 176, 305 |
| MfeI | CAATTG | 1 cut(s) | 403 |
| MflI | RGATCY | 2 cut(s) | 331, 611 |
| MhlI | GDGCHC | 1 cut(s) | 849 |
| MluCI | AATT | 4 cut(s) | 403, 460, 551, 760 |
| MmeI | TCCRAC | 1 cut(s) | 323 |
| MnlI | CCTC | 7 cut(s) | 115, 151, 221, 423, 443, 708, 735 |
| MspA1I | CMGCKG | 1 cut(s) | 422 |
| MspI | CCGG | 1 cut(s) | 660 |
| MspR9I | CCNGG | 1 cut(s) | 701 |
| MunI | CAATTG | 1 cut(s) | 403 |
| Mva1269I | GAATGC | 1 cut(s) | 352 |
| MvaI | CCWGG | 1 cut(s) | 701 |
| MvnI | CGCG | 4 cut(s) | 577, 597, 776, 778 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 243, 541, 596, 782, 879 |
| NdeII | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| NlaIII | CATG | 1 cut(s) | 149 |
| NlaIV | GGNNCC | 5 cut(s) | 157, 221, 245, 400, 743 |
| NmuCI | GTSAC | 1 cut(s) | 876 |
| NruI | TCGCGA | 1 cut(s) | 577 |
| PauI | GCGCGC | 1 cut(s) | 776 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 21, 65 |
| PctI | GAATGC | 1 cut(s) | 352 |
| PkrI | GCNGC | 7 cut(s) | 197, 421, 424, 492, 519, 596, 794 |
| PpuMI | RGGWCCY | 1 cut(s) | 219 |
| Psp124BI | GAGCTC | 1 cut(s) | 849 |
| Psp5II | RGGWCCY | 1 cut(s) | 219 |
| Psp6I | CCWGG | 1 cut(s) | 699 |
| PspGI | CCWGG | 1 cut(s) | 699 |
| PspN4I | GGNNCC | 5 cut(s) | 157, 221, 245, 400, 743 |
| PspPI | GGNCC | 2 cut(s) | 219, 244 |
| PspPPI | RGGWCCY | 1 cut(s) | 219 |
| PsuI | RGATCY | 2 cut(s) | 331, 611 |
| PteI | GCGCGC | 1 cut(s) | 776 |
| RruI | TCGCGA | 1 cut(s) | 577 |
| RsaI | GTAC | 1 cut(s) | 683 |
| RsaNI | GTAC | 1 cut(s) | 682 |
| SacI | GAGCTC | 1 cut(s) | 849 |
| SatI | GCNGC | 7 cut(s) | 196, 420, 423, 491, 518, 595, 793 |
| Sau3AI | GATC | 5 cut(s) | 112, 331, 337, 373, 611 |
| Sau96I | GGNCC | 2 cut(s) | 219, 244 |
| ScaI | AGTACT | 1 cut(s) | 683 |
| ScrFI | CCNGG | 1 cut(s) | 701 |
| SduI | GDGCHC | 1 cut(s) | 849 |
| SetI | ASST | 8 cut(s) | 45, 415, 435, 458, 501, 702, 719, 849 |
| SexAI | ACCWGGT | 1 cut(s) | 699 |
| SfaNI | GCATC | 3 cut(s) | 154, 366, 547 |
| SinI | GGWCC | 1 cut(s) | 219 |
| Sse9I | AATT | 4 cut(s) | 403, 460, 551, 760 |
| SsiI | CCGC | 6 cut(s) | 196, 350, 420, 595, 790, 793 |
| SspI | AATATT | 1 cut(s) | 109 |
| SspMI | CTAG | 3 cut(s) | 201, 416, 507 |
| SstI | GAGCTC | 1 cut(s) | 849 |
| StyD4I | CCNGG | 1 cut(s) | 699 |
| TaaI | ACNGT | 2 cut(s) | 182, 398 |
| TaiI | ACGT | 1 cut(s) | 501 |
| TaqI | TCGA | 2 cut(s) | 15, 758 |
| TasI | AATT | 4 cut(s) | 403, 460, 551, 760 |
| TatI | WGTACW | 1 cut(s) | 681 |
| TauI | GCSGC | 4 cut(s) | 198, 422, 597, 795 |
| TscAI | CASTG | 2 cut(s) | 291, 757 |
| TseFI | GTSAC | 1 cut(s) | 876 |
| TseI | GCWGC | 3 cut(s) | 422, 490, 517 |
| Tsp45I | GTSAC | 1 cut(s) | 876 |
| TspDTI | ATGAA | 2 cut(s) | 147, 306 |
| TspRI | CASTG | 2 cut(s) | 291, 757 |
| VpaK11BI | GGWCC | 1 cut(s) | 219 |
| XspI | CTAG | 3 cut(s) | 201, 416, 507 |
| ZrmI | AGTACT | 1 cut(s) | 683 |