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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 198 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 547 |
| AccBSI | CCGCTC | 2 cut(s) | 89, 487 |
| AccII | CGCG | 5 cut(s) | 282, 336, 493, 499, 561 |
| AclWI | GGATC | 3 cut(s) | 201, 214, 374 |
| AcoI | YGGCCR | 2 cut(s) | 193, 488 |
| AcsI | RAATTY | 1 cut(s) | 387 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 363, 547, 591 |
| AgsI | TTSAA | 1 cut(s) | 436 |
| AleI | CACNNNNGTG | 2 cut(s) | 24, 528 |
| AluBI | AGCT | 3 cut(s) | 451, 505, 580 |
| AluI | AGCT | 3 cut(s) | 451, 505, 580 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| AlwI | GGATC | 3 cut(s) | 201, 214, 374 |
| Ama87I | CYCGRG | 2 cut(s) | 287, 568 |
| AoxI | GGCC | 4 cut(s) | 193, 318, 379, 488 |
| ApeKI | GCWGC | 1 cut(s) | 227 |
| ApoI | RAATTY | 1 cut(s) | 387 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 431 |
| AspLEI | GCGC | 5 cut(s) | 41, 83, 284, 338, 501 |
| AspS9I | GGNCC | 2 cut(s) | 345, 380 |
| AsuC2I | CCSGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| AsuHPI | GGTGA | 1 cut(s) | 234 |
| AvaI | CYCGRG | 2 cut(s) | 287, 568 |
| AvaII | GGWCC | 1 cut(s) | 345 |
| BamHI | GGATCC | 1 cut(s) | 206 |
| BanI | GGYRCC | 1 cut(s) | 198 |
| BanII | GRGCYC | 2 cut(s) | 221, 517 |
| BauI | CACGAG | 1 cut(s) | 407 |
| BbvI | GCAGC | 1 cut(s) | 214 |
| BccI | CCATC | 1 cut(s) | 320 |
| BceAI | ACGGC | 1 cut(s) | 186 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 117, 151 |
| BcnI | CCSGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BfaI | CTAG | 2 cut(s) | 275, 536 |
| BfoI | RGCGCY | 2 cut(s) | 42, 84 |
| Bme1390I | CCNGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| Bme18I | GGWCC | 1 cut(s) | 345 |
| BmeT110I | CYCGRG | 2 cut(s) | 287, 568 |
| BmgT120I | GGNCC | 2 cut(s) | 345, 380 |
| BmiI | GGNNCC | 7 cut(s) | 200, 208, 220, 346, 347, 382, 514 |
| BmrFI | CCNGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| BoxI | GACNNNNGTC | 1 cut(s) | 171 |
| BpuMI | CCSGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| BsaJI | CCNNGG | 6 cut(s) | 202, 321, 382, 466, 568, 569 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 363, 547, 591 |
| Bse118I | RCCGGY | 2 cut(s) | 195, 394 |
| BseDI | CCNNGG | 6 cut(s) | 202, 321, 382, 466, 568, 569 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 363, 547, 591 |
| BseRI | GAGGAG | 1 cut(s) | 544 |
| BseX3I | CGGCCG | 2 cut(s) | 193, 488 |
| BseXI | GCAGC | 1 cut(s) | 214 |
| Bsh1236I | CGCG | 5 cut(s) | 282, 336, 493, 499, 561 |
| Bsh1285I | CGRYCG | 5 cut(s) | 127, 172, 196, 491, 497 |
| BshFI | GGCC | 4 cut(s) | 195, 320, 381, 490 |
| BshNI | GGYRCC | 1 cut(s) | 198 |
| BsiEI | CGRYCG | 5 cut(s) | 127, 172, 196, 491, 497 |
| BsiHKCI | CYCGRG | 2 cut(s) | 287, 568 |
| BsiSI | CCGG | 8 cut(s) | 186, 196, 303, 321, 384, 395, 468, 569 |
| BslFI | GGGAC | 2 cut(s) | 179, 331 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 363, 547, 591 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| BsmFI | GGGAC | 2 cut(s) | 179, 331 |
| BsnI | GGCC | 4 cut(s) | 195, 320, 381, 490 |
| BsoBI | CYCGRG | 2 cut(s) | 287, 568 |
| Bsp1286I | GDGCHC | 2 cut(s) | 221, 517 |
| Bsp143I | GATC | 4 cut(s) | 169, 206, 366, 562 |
| Bsp68I | TCGCGA | 1 cut(s) | 561 |
| BspANI | GGCC | 4 cut(s) | 195, 320, 381, 490 |
| BspFNI | CGCG | 5 cut(s) | 282, 336, 493, 499, 561 |
| BspHI | TCATGA | 1 cut(s) | 52 |
| BspLI | GGNNCC | 7 cut(s) | 200, 208, 220, 346, 347, 382, 514 |
| BspPI | GGATC | 3 cut(s) | 201, 214, 374 |
| BspT107I | GGYRCC | 1 cut(s) | 198 |
| BsrBI | CCGCTC | 2 cut(s) | 89, 487 |
| BsrFI | RCCGGY | 2 cut(s) | 195, 394 |
| BssAI | RCCGGY | 2 cut(s) | 195, 394 |
| BssECI | CCNNGG | 6 cut(s) | 202, 321, 382, 466, 568, 569 |
| BssMI | GATC | 4 cut(s) | 169, 206, 366, 562 |
| BssSI | CACGAG | 1 cut(s) | 407 |
| Bst2BI | CACGAG | 1 cut(s) | 407 |
| Bst4CI | ACNGT | 1 cut(s) | 23 |
| Bst6I | CTCTTC | 2 cut(s) | 124, 217 |
| BstC8I | GCNNGC | 3 cut(s) | 109, 280, 503 |
| BstDSI | CCRYGG | 1 cut(s) | 202 |
| BstEII | GGTNACC | 1 cut(s) | 292 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstFNI | CGCG | 5 cut(s) | 282, 336, 493, 499, 561 |
| BstH2I | RGCGCY | 2 cut(s) | 42, 84 |
| BstHHI | GCGC | 5 cut(s) | 41, 83, 284, 338, 501 |
| BstKTI | GATC | 4 cut(s) | 172, 209, 369, 565 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMBI | GATC | 4 cut(s) | 169, 206, 366, 562 |
| BstMCI | CGRYCG | 5 cut(s) | 127, 172, 196, 491, 497 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 36, 198, 230, 368, 496 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 171 |
| BstPI | GGTNACC | 1 cut(s) | 292 |
| BstSCI | CCNGG | 6 cut(s) | 301, 320, 382, 466, 567, 568 |
| BstUI | CGCG | 5 cut(s) | 282, 336, 493, 499, 561 |
| BstV1I | GCAGC | 1 cut(s) | 214 |
| BstX2I | RGATCY | 1 cut(s) | 206 |
| BstYI | RGATCY | 1 cut(s) | 206 |
| BstZI | CGGCCG | 2 cut(s) | 193, 488 |
| BsuRI | GGCC | 4 cut(s) | 195, 320, 381, 490 |
| BtgI | CCRYGG | 1 cut(s) | 202 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| BtsIMutI | CAGTG | 1 cut(s) | 19 |
| BtuMI | TCGCGA | 1 cut(s) | 561 |
| Cac8I | GCNNGC | 3 cut(s) | 109, 280, 503 |
| CciI | TCATGA | 1 cut(s) | 52 |
| CciNI | GCGGCCGC | 1 cut(s) | 488 |
| CfoI | GCGC | 5 cut(s) | 41, 83, 284, 338, 501 |
| Cfr10I | RCCGGY | 2 cut(s) | 195, 394 |
| Cfr13I | GGNCC | 2 cut(s) | 345, 380 |
| Cfr9I | CCCGGG | 1 cut(s) | 568 |
| CviAII | CATG | 1 cut(s) | 53 |
| DpnI | GATC | 4 cut(s) | 171, 208, 368, 564 |
| DpnII | GATC | 4 cut(s) | 169, 206, 366, 562 |
| EaeI | YGGCCR | 2 cut(s) | 193, 488 |
| EagI | CGGCCG | 2 cut(s) | 193, 488 |
| Eam1104I | CTCTTC | 2 cut(s) | 124, 217 |
| EarI | CTCTTC | 2 cut(s) | 124, 217 |
| EciI | GGCGGA | 1 cut(s) | 211 |
| EclXI | CGGCCG | 2 cut(s) | 193, 488 |
| Eco24I | GRGCYC | 2 cut(s) | 221, 517 |
| Eco32I | GATATC | 1 cut(s) | 353 |
| Eco47I | GGWCC | 1 cut(s) | 345 |
| Eco52I | CGGCCG | 2 cut(s) | 193, 488 |
| Eco88I | CYCGRG | 2 cut(s) | 287, 568 |
| Eco91I | GGTNACC | 1 cut(s) | 292 |
| EcoO109I | RGGNCCY | 1 cut(s) | 345 |
| EcoO65I | GGTNACC | 1 cut(s) | 292 |
| EcoRI | GAATTC | 1 cut(s) | 387 |
| EcoRV | GATATC | 1 cut(s) | 353 |
| EcoT38I | GRGCYC | 2 cut(s) | 221, 517 |
| FaeI | CATG | 1 cut(s) | 56 |
| FaiI | YATR | 1 cut(s) | 54 |
| FaqI | GGGAC | 2 cut(s) | 179, 331 |
| FatI | CATG | 1 cut(s) | 52 |
| FauI | CCCGC | 2 cut(s) | 100, 287 |
| FokI | GGATG | 1 cut(s) | 338 |
| FriOI | GRGCYC | 2 cut(s) | 221, 517 |
| FspBI | CTAG | 2 cut(s) | 275, 536 |
| GlaI | GCGC | 5 cut(s) | 40, 82, 283, 337, 500 |
| HaeII | RGCGCY | 2 cut(s) | 42, 84 |
| HaeIII | GGCC | 4 cut(s) | 195, 320, 381, 490 |
| HapII | CCGG | 8 cut(s) | 186, 196, 303, 321, 384, 395, 468, 569 |
| HhaI | GCGC | 5 cut(s) | 41, 83, 284, 338, 501 |
| Hin1II | CATG | 1 cut(s) | 56 |
| Hin6I | GCGC | 5 cut(s) | 39, 81, 282, 336, 499 |
| HinP1I | GCGC | 5 cut(s) | 39, 81, 282, 336, 499 |
| HinfI | GANTC | 3 cut(s) | 56, 459, 551 |
| HpaII | CCGG | 8 cut(s) | 186, 196, 303, 321, 384, 395, 468, 569 |
| HphI | GGTGA | 1 cut(s) | 234 |
| Hpy166II | GTNNAC | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 1 cut(s) | 366 |
| Hpy188III | TCNNGA | 4 cut(s) | 53, 348, 407, 560 |
| Hpy8I | GTNNAC | 1 cut(s) | 550 |
| Hpy99I | CGWCG | 3 cut(s) | 177, 378, 512 |
| HpyAV | CCTTC | 3 cut(s) | 156, 267, 349 |
| HpyCH4III | ACNGT | 1 cut(s) | 23 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 36, 198, 230, 368, 496 |
| Hsp92II | CATG | 1 cut(s) | 56 |
| HspAI | GCGC | 5 cut(s) | 39, 81, 282, 336, 499 |
| KflI | GGGWCCC | 1 cut(s) | 345 |
| Kzo9I | GATC | 4 cut(s) | 169, 206, 366, 562 |
| LmnI | GCTCC | 2 cut(s) | 224, 512 |
| LpnPI | CCDG | 9 cut(s) | 142, 199, 209, 316, 334, 397, 408, 481, 582 |
| Lsp1109I | GCAGC | 1 cut(s) | 214 |
| MaeI | CTAG | 2 cut(s) | 275, 536 |
| MaeIII | GTNAC | 2 cut(s) | 292, 404 |
| MalI | GATC | 4 cut(s) | 171, 208, 368, 564 |
| MbiI | CCGCTC | 2 cut(s) | 89, 487 |
| MboI | GATC | 4 cut(s) | 169, 206, 366, 562 |
| MboII | GAAGA | 6 cut(s) | 16, 87, 125, 141, 204, 392 |
| MflI | RGATCY | 1 cut(s) | 206 |
| MhlI | GDGCHC | 2 cut(s) | 221, 517 |
| MluCI | AATT | 2 cut(s) | 100, 387 |
| MlyI | GAGTC | 1 cut(s) | 545 |
| MnlI | CCTC | 7 cut(s) | 220, 250, 264, 283, 309, 310, 565 |
| MroXI | GAANNNNTTC | 1 cut(s) | 431 |
| MseI | TTAA | 2 cut(s) | 476, 598 |
| MslI | CAYNNNNRTG | 2 cut(s) | 24, 528 |
| MspA1I | CMGCKG | 1 cut(s) | 227 |
| MspI | CCGG | 8 cut(s) | 186, 196, 303, 321, 384, 395, 468, 569 |
| MspR9I | CCNGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| MvnI | CGCG | 5 cut(s) | 282, 336, 493, 499, 561 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 36, 198, 230, 368, 496 |
| NciI | CCSGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| NdeII | GATC | 4 cut(s) | 169, 206, 366, 562 |
| NlaIII | CATG | 1 cut(s) | 56 |
| NlaIV | GGNNCC | 7 cut(s) | 200, 208, 220, 346, 347, 382, 514 |
| NmuCI | GTSAC | 1 cut(s) | 404 |
| NotI | GCGGCCGC | 1 cut(s) | 488 |
| NruI | TCGCGA | 1 cut(s) | 561 |
| OliI | CACNNNNGTG | 2 cut(s) | 24, 528 |
| PaeR7I | CTCGAG | 1 cut(s) | 287 |
| PagI | TCATGA | 1 cut(s) | 52 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 370 |
| PdmI | GAANNNNTTC | 1 cut(s) | 431 |
| PfeI | GAWTC | 2 cut(s) | 56, 459 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 547 |
| PfoI | TCCNGGA | 1 cut(s) | 301 |
| Ple19I | CGATCG | 1 cut(s) | 172 |
| PleI | GAGTC | 1 cut(s) | 545 |
| PpsI | GAGTC | 1 cut(s) | 545 |
| PpuMI | RGGWCCY | 1 cut(s) | 345 |
| PshAI | GACNNNNGTC | 1 cut(s) | 171 |
| Psp5II | RGGWCCY | 1 cut(s) | 345 |
| PspEI | GGTNACC | 1 cut(s) | 292 |
| PspN4I | GGNNCC | 7 cut(s) | 200, 208, 220, 346, 347, 382, 514 |
| PspPI | GGNCC | 2 cut(s) | 345, 380 |
| PspPPI | RGGWCCY | 1 cut(s) | 345 |
| PspXI | VCTCGAGB | 1 cut(s) | 287 |
| PsuI | RGATCY | 1 cut(s) | 206 |
| PvuI | CGATCG | 1 cut(s) | 172 |
| RruI | TCGCGA | 1 cut(s) | 561 |
| RseI | CAYNNNNRTG | 2 cut(s) | 24, 528 |
| SaqAI | TTAA | 2 cut(s) | 476, 598 |
| Sau3AI | GATC | 4 cut(s) | 169, 206, 366, 562 |
| Sau96I | GGNCC | 2 cut(s) | 345, 380 |
| SchI | GAGTC | 1 cut(s) | 545 |
| ScrFI | CCNGG | 6 cut(s) | 303, 322, 384, 468, 569, 570 |
| SduI | GDGCHC | 2 cut(s) | 221, 517 |
| SetI | ASST | 4 cut(s) | 294, 453, 507, 582 |
| Sfr274I | CTCGAG | 1 cut(s) | 287 |
| SinI | GGWCC | 1 cut(s) | 345 |
| SlaI | CTCGAG | 1 cut(s) | 287 |
| SmaI | CCCGGG | 1 cut(s) | 570 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 24, 528 |
| SmlI | CTYRAG | 1 cut(s) | 287 |
| SmoI | CTYRAG | 1 cut(s) | 287 |
| Sse9I | AATT | 2 cut(s) | 100, 387 |
| SspMI | CTAG | 2 cut(s) | 275, 536 |
| StyD4I | CCNGG | 6 cut(s) | 301, 320, 382, 466, 567, 568 |
| TaaI | ACNGT | 1 cut(s) | 23 |
| TaqI | TCGA | 4 cut(s) | 127, 175, 288, 507 |
| TaqII | GACCGA | 1 cut(s) | 113 |
| TasI | AATT | 2 cut(s) | 100, 387 |
| TfiI | GAWTC | 2 cut(s) | 56, 459 |
| Tru1I | TTAA | 2 cut(s) | 476, 598 |
| Tru9I | TTAA | 2 cut(s) | 476, 598 |
| TscAI | CASTG | 1 cut(s) | 26 |
| TseFI | GTSAC | 1 cut(s) | 404 |
| TseI | GCWGC | 1 cut(s) | 227 |
| Tsp45I | GTSAC | 1 cut(s) | 404 |
| TspDTI | ATGAA | 3 cut(s) | 17, 69, 494 |
| TspGWI | ACGGA | 2 cut(s) | 285, 525 |
| TspMI | CCCGGG | 1 cut(s) | 568 |
| TspRI | CASTG | 1 cut(s) | 26 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 547 |
| VpaK11BI | GGWCC | 1 cut(s) | 345 |
| XapI | RAATTY | 1 cut(s) | 387 |
| XhoI | CTCGAG | 1 cut(s) | 287 |
| XmaI | CCCGGG | 1 cut(s) | 568 |
| XmnI | GAANNNNTTC | 1 cut(s) | 431 |
| XspI | CTAG | 2 cut(s) | 275, 536 |