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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 55, 331 |
| AccII | CGCG | 5 cut(s) | 24, 165, 377, 379, 398 |
| AciI | CCGC | 8 cut(s) | 22, 53, 61, 163, 179, 219, 329, 393 |
| AclWI | GGATC | 4 cut(s) | 115, 128, 350, 363 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AcuI | CTGAAG | 1 cut(s) | 142 |
| AfaI | GTAC | 5 cut(s) | 71, 146, 233, 272, 306 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 47, 352 |
| AgsI | TTSAA | 1 cut(s) | 95 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 41 |
| AjnI | CCWGG | 1 cut(s) | 381 |
| AluBI | AGCT | 1 cut(s) | 199 |
| AluI | AGCT | 1 cut(s) | 199 |
| AlwI | GGATC | 4 cut(s) | 115, 128, 350, 363 |
| Ama87I | CYCGRG | 2 cut(s) | 308, 332 |
| AoxI | GGCC | 3 cut(s) | 3, 49, 205 |
| ApaI | GGGCCC | 1 cut(s) | 53 |
| AspLEI | GCGC | 3 cut(s) | 379, 381, 398 |
| AspS9I | GGNCC | 4 cut(s) | 4, 49, 50, 110 |
| AsuHPI | GGTGA | 1 cut(s) | 233 |
| AvaI | CYCGRG | 2 cut(s) | 308, 332 |
| AvaII | GGWCC | 1 cut(s) | 110 |
| BaeGI | GKGCMC | 1 cut(s) | 53 |
| BamHI | GGATCC | 2 cut(s) | 120, 355 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 1 cut(s) | 383 |
| BclI | TGATCA | 1 cut(s) | 370 |
| BfmI | CTRYAG | 1 cut(s) | 364 |
| BisI | GCNGC | 3 cut(s) | 22, 163, 394 |
| BlsI | GCNGC | 3 cut(s) | 23, 164, 395 |
| Bme1390I | CCNGG | 1 cut(s) | 383 |
| Bme18I | GGWCC | 1 cut(s) | 110 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 41 |
| BmeT110I | CYCGRG | 2 cut(s) | 308, 332 |
| BmgT120I | GGNCC | 4 cut(s) | 4, 49, 50, 110 |
| BmiI | GGNNCC | 4 cut(s) | 51, 112, 122, 357 |
| BmrFI | CCNGG | 1 cut(s) | 383 |
| BmsI | GCATC | 2 cut(s) | 94, 276 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 47, 352 |
| Bse1I | ACTGG | 1 cut(s) | 103 |
| BseBI | CCWGG | 1 cut(s) | 383 |
| BseGI | GGATG | 2 cut(s) | 85, 236 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 47, 352 |
| BseNI | ACTGG | 1 cut(s) | 103 |
| BsePI | GCGCGC | 1 cut(s) | 377 |
| BseSI | GKGCMC | 1 cut(s) | 53 |
| Bsh1236I | CGCG | 5 cut(s) | 24, 165, 377, 379, 398 |
| BshFI | GGCC | 3 cut(s) | 5, 51, 207 |
| BsiHKCI | CYCGRG | 2 cut(s) | 308, 332 |
| BslFI | GGGAC | 1 cut(s) | 96 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 47, 352 |
| BsmFI | GGGAC | 1 cut(s) | 96 |
| BsnI | GGCC | 3 cut(s) | 5, 51, 207 |
| BsoBI | CYCGRG | 2 cut(s) | 308, 332 |
| Bsp120I | GGGCCC | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 1 cut(s) | 53 |
| Bsp143I | GATC | 3 cut(s) | 120, 355, 370 |
| BspACI | CCGC | 8 cut(s) | 22, 53, 61, 163, 179, 219, 329, 393 |
| BspANI | GGCC | 3 cut(s) | 5, 51, 207 |
| BspFNI | CGCG | 5 cut(s) | 24, 165, 377, 379, 398 |
| BspHI | TCATGA | 1 cut(s) | 349 |
| BspLI | GGNNCC | 4 cut(s) | 51, 112, 122, 357 |
| BspPI | GGATC | 4 cut(s) | 115, 128, 350, 363 |
| BsrBI | CCGCTC | 2 cut(s) | 55, 331 |
| BsrI | ACTGG | 1 cut(s) | 103 |
| BssHII | GCGCGC | 1 cut(s) | 377 |
| BssMI | GATC | 3 cut(s) | 120, 355, 370 |
| Bst2UI | CCWGG | 1 cut(s) | 383 |
| Bst4CI | ACNGT | 2 cut(s) | 17, 368 |
| BstC8I | GCNNGC | 2 cut(s) | 53, 379 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 350 |
| BstF5I | GGATG | 2 cut(s) | 85, 236 |
| BstFNI | CGCG | 5 cut(s) | 24, 165, 377, 379, 398 |
| BstHHI | GCGC | 3 cut(s) | 379, 381, 398 |
| BstKTI | GATC | 3 cut(s) | 123, 358, 373 |
| BstMBI | GATC | 3 cut(s) | 120, 355, 370 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 383 |
| BstNI | CCWGG | 1 cut(s) | 383 |
| BstSCI | CCNGG | 1 cut(s) | 381 |
| BstSFI | CTRYAG | 1 cut(s) | 364 |
| BstSLI | GKGCMC | 1 cut(s) | 53 |
| BstUI | CGCG | 5 cut(s) | 24, 165, 377, 379, 398 |
| BstX2I | RGATCY | 2 cut(s) | 120, 355 |
| BstYI | RGATCY | 2 cut(s) | 120, 355 |
| BsuRI | GGCC | 3 cut(s) | 5, 51, 207 |
| BtsCI | GGATG | 2 cut(s) | 85, 236 |
| BtsIMutI | CAGTG | 1 cut(s) | 373 |
| Cac8I | GCNNGC | 2 cut(s) | 53, 379 |
| CciI | TCATGA | 1 cut(s) | 349 |
| CfoI | GCGC | 3 cut(s) | 379, 381, 398 |
| Cfr13I | GGNCC | 4 cut(s) | 4, 49, 50, 110 |
| CseI | GACGC | 1 cut(s) | 13 |
| Csp6I | GTAC | 5 cut(s) | 70, 145, 232, 271, 305 |
| CviAII | CATG | 3 cut(s) | 74, 82, 350 |
| CviJI | RGCY | 9 cut(s) | 5, 51, 136, 162, 191, 199, 207, 214, 386 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 51, 136, 162, 191, 199, 207, 214, 386 |
| CviQI | GTAC | 5 cut(s) | 70, 145, 232, 271, 305 |
| DpnI | GATC | 3 cut(s) | 122, 357, 372 |
| DpnII | GATC | 3 cut(s) | 120, 355, 370 |
| DriI | GACNNNNNGTC | 1 cut(s) | 41 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 41 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco47I | GGWCC | 1 cut(s) | 110 |
| Eco57I | CTGAAG | 1 cut(s) | 142 |
| Eco88I | CYCGRG | 2 cut(s) | 308, 332 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 350 |
| EcoRII | CCWGG | 1 cut(s) | 381 |
| EcoT22I | ATGCAT | 1 cut(s) | 87 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| FaeI | CATG | 3 cut(s) | 77, 85, 353 |
| FaiI | YATR | 5 cut(s) | 12, 75, 83, 265, 351 |
| FaqI | GGGAC | 1 cut(s) | 96 |
| FatI | CATG | 3 cut(s) | 73, 81, 349 |
| FauI | CCCGC | 1 cut(s) | 60 |
| FbaI | TGATCA | 1 cut(s) | 370 |
| Fnu4HI | GCNGC | 3 cut(s) | 22, 163, 394 |
| FokI | GGATG | 2 cut(s) | 72, 223 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| Fsp4HI | GCNGC | 3 cut(s) | 22, 163, 394 |
| GlaI | GCGC | 3 cut(s) | 378, 380, 397 |
| GluI | GCNGC | 3 cut(s) | 22, 163, 394 |
| HaeIII | GGCC | 3 cut(s) | 5, 51, 207 |
| HgaI | GACGC | 1 cut(s) | 13 |
| HhaI | GCGC | 3 cut(s) | 379, 381, 398 |
| Hin1II | CATG | 3 cut(s) | 77, 85, 353 |
| Hin6I | GCGC | 3 cut(s) | 377, 379, 396 |
| HinP1I | GCGC | 3 cut(s) | 377, 379, 396 |
| HinfI | GANTC | 2 cut(s) | 318, 342 |
| HphI | GGTGA | 1 cut(s) | 233 |
| Hpy166II | GTNNAC | 1 cut(s) | 234 |
| Hpy188I | TCNGA | 2 cut(s) | 35, 253 |
| Hpy188III | TCNNGA | 4 cut(s) | 118, 278, 310, 350 |
| Hpy8I | GTNNAC | 1 cut(s) | 234 |
| Hpy99I | CGWCG | 2 cut(s) | 29, 190 |
| HpyAV | CCTTC | 4 cut(s) | 124, 222, 284, 356 |
| HpyCH4III | ACNGT | 2 cut(s) | 17, 368 |
| HpyCH4V | TGCA | 1 cut(s) | 85 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 383 |
| Hsp92II | CATG | 3 cut(s) | 77, 85, 353 |
| HspAI | GCGC | 3 cut(s) | 377, 379, 396 |
| Ksp22I | TGATCA | 1 cut(s) | 370 |
| Kzo9I | GATC | 3 cut(s) | 120, 355, 370 |
| LpnPI | CCDG | 8 cut(s) | 54, 84, 93, 103, 118, 263, 368, 395 |
| LweI | GCATC | 2 cut(s) | 94, 276 |
| MalI | GATC | 3 cut(s) | 122, 357, 372 |
| MbiI | CCGCTC | 2 cut(s) | 55, 331 |
| MboI | GATC | 3 cut(s) | 120, 355, 370 |
| MboII | GAAGA | 1 cut(s) | 327 |
| MflI | RGATCY | 2 cut(s) | 120, 355 |
| MhlI | GDGCHC | 1 cut(s) | 53 |
| MluCI | AATT | 1 cut(s) | 127 |
| MnlI | CCTC | 6 cut(s) | 17, 134, 160, 217, 336, 346 |
| Mph1103I | ATGCAT | 1 cut(s) | 87 |
| MspR9I | CCNGG | 1 cut(s) | 383 |
| MvaI | CCWGG | 1 cut(s) | 383 |
| MvnI | CGCG | 5 cut(s) | 24, 165, 377, 379, 398 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 383 |
| NdeII | GATC | 3 cut(s) | 120, 355, 370 |
| NlaIII | CATG | 3 cut(s) | 77, 85, 353 |
| NlaIV | GGNNCC | 4 cut(s) | 51, 112, 122, 357 |
| NmeAIII | GCCGAG | 1 cut(s) | 183 |
| NsiI | ATGCAT | 1 cut(s) | 87 |
| PaeR7I | CTCGAG | 2 cut(s) | 308, 332 |
| PagI | TCATGA | 1 cut(s) | 349 |
| PauI | GCGCGC | 1 cut(s) | 377 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 21 |
| PfeI | GAWTC | 2 cut(s) | 318, 342 |
| PkrI | GCNGC | 3 cut(s) | 23, 164, 395 |
| Psp6I | CCWGG | 1 cut(s) | 381 |
| PspGI | CCWGG | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 4 cut(s) | 51, 112, 122, 357 |
| PspOMI | GGGCCC | 1 cut(s) | 49 |
| PspPI | GGNCC | 4 cut(s) | 4, 49, 50, 110 |
| PspXI | VCTCGAGB | 1 cut(s) | 332 |
| PsuI | RGATCY | 2 cut(s) | 120, 355 |
| PteI | GCGCGC | 1 cut(s) | 377 |
| RsaI | GTAC | 5 cut(s) | 71, 146, 233, 272, 306 |
| RsaNI | GTAC | 5 cut(s) | 70, 145, 232, 271, 305 |
| SatI | GCNGC | 3 cut(s) | 22, 163, 394 |
| Sau3AI | GATC | 3 cut(s) | 120, 355, 370 |
| Sau96I | GGNCC | 4 cut(s) | 4, 49, 50, 110 |
| ScrFI | CCNGG | 1 cut(s) | 383 |
| SduI | GDGCHC | 1 cut(s) | 53 |
| SetI | ASST | 6 cut(s) | 43, 201, 233, 247, 276, 328 |
| SfaNI | GCATC | 2 cut(s) | 94, 276 |
| SfcI | CTRYAG | 1 cut(s) | 364 |
| Sfr274I | CTCGAG | 2 cut(s) | 308, 332 |
| SinI | GGWCC | 1 cut(s) | 110 |
| SlaI | CTCGAG | 2 cut(s) | 308, 332 |
| SmlI | CTYRAG | 2 cut(s) | 308, 332 |
| SmoI | CTYRAG | 2 cut(s) | 308, 332 |
| Sse9I | AATT | 1 cut(s) | 127 |
| SsiI | CCGC | 8 cut(s) | 22, 53, 61, 163, 179, 219, 329, 393 |
| StyD4I | CCNGG | 1 cut(s) | 381 |
| TaaI | ACNGT | 2 cut(s) | 17, 368 |
| TaqI | TCGA | 4 cut(s) | 27, 297, 309, 333 |
| TasI | AATT | 1 cut(s) | 127 |
| TatI | WGTACW | 1 cut(s) | 144 |
| TauI | GCSGC | 3 cut(s) | 24, 165, 396 |
| TfiI | GAWTC | 2 cut(s) | 318, 342 |
| TscAI | CASTG | 1 cut(s) | 373 |
| TspDTI | ATGAA | 1 cut(s) | 338 |
| TspGWI | ACGGA | 1 cut(s) | 174 |
| TspRI | CASTG | 1 cut(s) | 373 |
| VpaK11BI | GGWCC | 1 cut(s) | 110 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 350 |
| XhoI | CTCGAG | 2 cut(s) | 308, 332 |
| Zsp2I | ATGCAT | 1 cut(s) | 87 |