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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 273 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 412 |
| AccI | GTMKAC | 1 cut(s) | 208 |
| AciI | CCGC | 6 cut(s) | 53, 238, 320, 368, 371, 458 |
| AdeI | CACNNNGTG | 1 cut(s) | 412 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 412 |
| AgsI | TTSAA | 2 cut(s) | 113, 259 |
| AjnI | CCWGG | 3 cut(s) | 65, 247, 329 |
| AluBI | AGCT | 4 cut(s) | 90, 315, 384, 429 |
| AluI | AGCT | 4 cut(s) | 90, 315, 384, 429 |
| Alw26I | GTCTC | 1 cut(s) | 331 |
| Ama87I | CYCGRG | 1 cut(s) | 168 |
| AoxI | GGCC | 2 cut(s) | 3, 302 |
| ApeKI | GCWGC | 3 cut(s) | 56, 90, 433 |
| AspLEI | GCGC | 1 cut(s) | 274 |
| AspS9I | GGNCC | 3 cut(s) | 4, 243, 303 |
| AvaI | CYCGRG | 1 cut(s) | 168 |
| AvaII | GGWCC | 1 cut(s) | 243 |
| BbsI | GAAGAC | 2 cut(s) | 192, 226 |
| BbvI | GCAGC | 3 cut(s) | 43, 77, 420 |
| BccI | CCATC | 3 cut(s) | 221, 225, 317 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 453, 487 |
| BciT130I | CCWGG | 3 cut(s) | 67, 249, 331 |
| BcoDI | GTCTC | 1 cut(s) | 331 |
| BfaI | CTAG | 4 cut(s) | 75, 87, 381, 489 |
| BglII | AGATCT | 1 cut(s) | 349 |
| BisI | GCNGC | 5 cut(s) | 54, 57, 91, 369, 434 |
| BlsI | GCNGC | 5 cut(s) | 55, 58, 92, 370, 435 |
| Bme1390I | CCNGG | 3 cut(s) | 67, 249, 331 |
| Bme18I | GGWCC | 1 cut(s) | 243 |
| BmeT110I | CYCGRG | 1 cut(s) | 168 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 243, 303 |
| BmiI | GGNNCC | 2 cut(s) | 6, 245 |
| BmrFI | CCNGG | 3 cut(s) | 67, 249, 331 |
| BmsI | GCATC | 2 cut(s) | 136, 283 |
| BpiI | GAAGAC | 2 cut(s) | 192, 226 |
| BpmI | CTGGAG | 1 cut(s) | 270 |
| BsaI | GGTCTC | 1 cut(s) | 331 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 247 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 412 |
| Bse1I | ACTGG | 1 cut(s) | 230 |
| BseBI | CCWGG | 3 cut(s) | 67, 249, 331 |
| BseDI | CCNNGG | 2 cut(s) | 66, 247 |
| BseGI | GGATG | 1 cut(s) | 213 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 412 |
| BseMII | CTCAG | 1 cut(s) | 142 |
| BseNI | ACTGG | 1 cut(s) | 230 |
| BseXI | GCAGC | 3 cut(s) | 43, 77, 420 |
| BshFI | GGCC | 2 cut(s) | 5, 304 |
| BsiHKCI | CYCGRG | 1 cut(s) | 168 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 67, 294, 412 |
| BsmAI | GTCTC | 1 cut(s) | 331 |
| BsmI | GAATGC | 1 cut(s) | 370 |
| BsnI | GGCC | 2 cut(s) | 5, 304 |
| Bso31I | GGTCTC | 1 cut(s) | 331 |
| BsoBI | CYCGRG | 1 cut(s) | 168 |
| Bsp143I | GATC | 2 cut(s) | 349, 387 |
| BspACI | CCGC | 6 cut(s) | 53, 238, 320, 368, 371, 458 |
| BspANI | GGCC | 2 cut(s) | 5, 304 |
| BspCNI | CTCAG | 1 cut(s) | 141 |
| BspLI | GGNNCC | 2 cut(s) | 6, 245 |
| BspTNI | GGTCTC | 1 cut(s) | 331 |
| BsrI | ACTGG | 1 cut(s) | 230 |
| BssECI | CCNNGG | 2 cut(s) | 66, 247 |
| BssMI | GATC | 2 cut(s) | 349, 387 |
| Bst2UI | CCWGG | 3 cut(s) | 67, 249, 331 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 90 |
| BstC8I | GCNNGC | 3 cut(s) | 358, 431, 462 |
| BstDEI | CTNAG | 1 cut(s) | 128 |
| BstF5I | GGATG | 1 cut(s) | 213 |
| BstHHI | GCGC | 1 cut(s) | 274 |
| BstKTI | GATC | 2 cut(s) | 352, 390 |
| BstMAI | GTCTC | 1 cut(s) | 331 |
| BstMBI | GATC | 2 cut(s) | 349, 387 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 90, 407 |
| BstNI | CCWGG | 3 cut(s) | 67, 249, 331 |
| BstSCI | CCNGG | 3 cut(s) | 65, 247, 329 |
| BstV1I | GCAGC | 3 cut(s) | 43, 77, 420 |
| BstV2I | GAAGAC | 2 cut(s) | 192, 226 |
| BstX2I | RGATCY | 1 cut(s) | 349 |
| BstYI | RGATCY | 1 cut(s) | 349 |
| BsuRI | GGCC | 2 cut(s) | 5, 304 |
| BtsCI | GGATG | 1 cut(s) | 213 |
| BtsI | GCAGTG | 1 cut(s) | 417 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| Cac8I | GCNNGC | 3 cut(s) | 358, 431, 462 |
| CfoI | GCGC | 1 cut(s) | 274 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 243, 303 |
| CseI | GACGC | 1 cut(s) | 197 |
| DdeI | CTNAG | 1 cut(s) | 128 |
| DpnI | GATC | 2 cut(s) | 351, 389 |
| DpnII | GATC | 2 cut(s) | 349, 387 |
| DraIII | CACNNNGTG | 1 cut(s) | 412 |
| EciI | GGCGGA | 2 cut(s) | 335, 386 |
| Eco31I | GGTCTC | 1 cut(s) | 331 |
| Eco47I | GGWCC | 1 cut(s) | 243 |
| Eco88I | CYCGRG | 1 cut(s) | 168 |
| EcoO109I | RGGNCCY | 1 cut(s) | 243 |
| EcoRII | CCWGG | 3 cut(s) | 65, 247, 329 |
| FaiI | YATR | 4 cut(s) | 63, 102, 204, 377 |
| FblI | GTMKAC | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 5 cut(s) | 54, 57, 91, 369, 434 |
| FokI | GGATG | 1 cut(s) | 200 |
| Fsp4HI | GCNGC | 5 cut(s) | 54, 57, 91, 369, 434 |
| FspAI | RTGCGCAY | 1 cut(s) | 273 |
| FspBI | CTAG | 4 cut(s) | 75, 87, 381, 489 |
| FspI | TGCGCA | 1 cut(s) | 273 |
| GlaI | GCGC | 1 cut(s) | 273 |
| GluI | GCNGC | 5 cut(s) | 54, 57, 91, 369, 434 |
| GsuI | CTGGAG | 1 cut(s) | 270 |
| HaeIII | GGCC | 2 cut(s) | 5, 304 |
| HgaI | GACGC | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 274 |
| Hin6I | GCGC | 1 cut(s) | 272 |
| HinP1I | GCGC | 1 cut(s) | 272 |
| HinfI | GANTC | 2 cut(s) | 173, 482 |
| Hpy166II | GTNNAC | 1 cut(s) | 209 |
| Hpy188I | TCNGA | 4 cut(s) | 131, 145, 279, 481 |
| Hpy188III | TCNNGA | 3 cut(s) | 170, 182, 450 |
| Hpy8I | GTNNAC | 1 cut(s) | 209 |
| HpyAV | CCTTC | 2 cut(s) | 412, 480 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 90, 407 |
| HpyF3I | CTNAG | 1 cut(s) | 128 |
| HspAI | GCGC | 1 cut(s) | 272 |
| Kzo9I | GATC | 2 cut(s) | 349, 387 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 77, 420 |
| LweI | GCATC | 2 cut(s) | 136, 283 |
| MaeI | CTAG | 4 cut(s) | 75, 87, 381, 489 |
| MalI | GATC | 2 cut(s) | 351, 389 |
| MboI | GATC | 2 cut(s) | 349, 387 |
| MboII | GAAGA | 4 cut(s) | 50, 153, 197, 226 |
| MflI | RGATCY | 1 cut(s) | 349 |
| MluCI | AATT | 1 cut(s) | 139 |
| MnlI | CCTC | 6 cut(s) | 18, 28, 129, 177, 209, 316 |
| MseI | TTAA | 1 cut(s) | 45 |
| MspA1I | CMGCKG | 1 cut(s) | 429 |
| MspR9I | CCNGG | 3 cut(s) | 67, 249, 331 |
| Mva1269I | GAATGC | 1 cut(s) | 370 |
| MvaI | CCWGG | 3 cut(s) | 67, 249, 331 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 90, 407 |
| NdeII | GATC | 2 cut(s) | 349, 387 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 245 |
| NmeAIII | GCCGAG | 1 cut(s) | 296 |
| NsbI | TGCGCA | 1 cut(s) | 273 |
| PaeR7I | CTCGAG | 1 cut(s) | 168 |
| PctI | GAATGC | 1 cut(s) | 370 |
| PfeI | GAWTC | 2 cut(s) | 173, 482 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 412 |
| PkrI | GCNGC | 5 cut(s) | 55, 58, 92, 370, 435 |
| PpuMI | RGGWCCY | 1 cut(s) | 243 |
| Psp5II | RGGWCCY | 1 cut(s) | 243 |
| Psp6I | CCWGG | 3 cut(s) | 65, 247, 329 |
| PspGI | CCWGG | 3 cut(s) | 65, 247, 329 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 245 |
| PspPI | GGNCC | 3 cut(s) | 4, 243, 303 |
| PspPPI | RGGWCCY | 1 cut(s) | 243 |
| PsuI | RGATCY | 1 cut(s) | 349 |
| PvuII | CAGCTG | 1 cut(s) | 429 |
| SaqAI | TTAA | 1 cut(s) | 45 |
| SatI | GCNGC | 5 cut(s) | 54, 57, 91, 369, 434 |
| Sau3AI | GATC | 2 cut(s) | 349, 387 |
| Sau96I | GGNCC | 3 cut(s) | 4, 243, 303 |
| ScrFI | CCNGG | 3 cut(s) | 67, 249, 331 |
| SetI | ASST | 8 cut(s) | 68, 92, 121, 317, 327, 386, 431, 472 |
| SfaNI | GCATC | 2 cut(s) | 136, 283 |
| Sfr274I | CTCGAG | 1 cut(s) | 168 |
| SinI | GGWCC | 1 cut(s) | 243 |
| SlaI | CTCGAG | 1 cut(s) | 168 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| Sse9I | AATT | 1 cut(s) | 139 |
| SsiI | CCGC | 6 cut(s) | 53, 238, 320, 368, 371, 458 |
| SspMI | CTAG | 4 cut(s) | 75, 87, 381, 489 |
| StyD4I | CCNGG | 3 cut(s) | 65, 247, 329 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaqI | TCGA | 4 cut(s) | 169, 220, 386, 473 |
| TasI | AATT | 1 cut(s) | 139 |
| TauI | GCSGC | 2 cut(s) | 56, 371 |
| TfiI | GAWTC | 2 cut(s) | 173, 482 |
| Tru1I | TTAA | 1 cut(s) | 45 |
| Tru9I | TTAA | 1 cut(s) | 45 |
| TscAI | CASTG | 1 cut(s) | 417 |
| TseI | GCWGC | 3 cut(s) | 56, 90, 433 |
| TspDTI | ATGAA | 2 cut(s) | 85, 89 |
| TspRI | CASTG | 1 cut(s) | 417 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 412 |
| VpaK11BI | GGWCC | 1 cut(s) | 243 |
| XhoI | CTCGAG | 1 cut(s) | 168 |
| XmiI | GTMKAC | 1 cut(s) | 208 |
| XspI | CTAG | 4 cut(s) | 75, 87, 381, 489 |