Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1365 |
| Acc65I | GGTACC | 1 cut(s) | 83 |
| AccB1I | GGYRCC | 3 cut(s) | 83, 224, 1021 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 728 |
| AccBSI | CCGCTC | 2 cut(s) | 397, 1549 |
| AccIII | TCCGGA | 1 cut(s) | 1691 |
| AclWI | GGATC | 5 cut(s) | 875, 953, 1236, 1389, 1632 |
| AcoI | YGGCCR | 2 cut(s) | 183, 257 |
| AcsI | RAATTY | 1 cut(s) | 629 |
| AfaI | GTAC | 6 cut(s) | 85, 617, 667, 758, 797, 1037 |
| AfeI | AGCGCT | 1 cut(s) | 905 |
| AgsI | TTSAA | 2 cut(s) | 860, 1208 |
| AhlI | ACTAGT | 1 cut(s) | 662 |
| AjnI | CCWGG | 6 cut(s) | 287, 668, 874, 1043, 1513, 1616 |
| AluBI | AGCT | 7 cut(s) | 867, 966, 973, 1289, 1327, 1346, 1429 |
| AluI | AGCT | 7 cut(s) | 867, 966, 973, 1289, 1327, 1346, 1429 |
| Alw21I | GWGCWC | 2 cut(s) | 585, 1329 |
| Alw26I | GTCTC | 1 cut(s) | 1553 |
| AlwI | GGATC | 5 cut(s) | 875, 953, 1236, 1389, 1632 |
| Aor13HI | TCCGGA | 1 cut(s) | 1691 |
| Aor51HI | AGCGCT | 1 cut(s) | 905 |
| AoxI | GGCC | 9 cut(s) | 116, 158, 183, 205, 257, 1006, 1076, 1088, 1464 |
| ApaI | GGGCCC | 1 cut(s) | 1080 |
| ApeKI | GCWGC | 8 cut(s) | 332, 401, 702, 950, 1346, 1349, 1352, 1499 |
| ApoI | RAATTY | 1 cut(s) | 629 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 434, 466 |
| Asp718I | GGTACC | 1 cut(s) | 83 |
| AspLEI | GCGC | 6 cut(s) | 310, 906, 923, 1117, 1273, 1504 |
| AspS9I | GGNCC | 8 cut(s) | 117, 158, 719, 1076, 1077, 1088, 1465, 1470 |
| AsuC2I | CCSGG | 3 cut(s) | 578, 1087, 1468 |
| AsuHPI | GGTGA | 5 cut(s) | 484, 544, 694, 1500, 1672 |
| AvaII | GGWCC | 2 cut(s) | 719, 1470 |
| BaeGI | GKGCMC | 2 cut(s) | 229, 1080 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 67, 100 |
| BanI | GGYRCC | 3 cut(s) | 83, 224, 1021 |
| BanII | GRGCYC | 4 cut(s) | 717, 1080, 1141, 1329 |
| BauI | CACGAG | 1 cut(s) | 746 |
| Bbv12I | GWGCWC | 2 cut(s) | 585, 1329 |
| BbvI | GCAGC | 8 cut(s) | 344, 388, 689, 937, 1333, 1336, 1339, 1486 |
| BccI | CCATC | 5 cut(s) | 243, 375, 497, 503, 1175 |
| BceAI | ACGGC | 6 cut(s) | 220, 244, 715, 1426, 1489, 1569 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 72, 959, 993, 1262, 1296 |
| BciT130I | CCWGG | 6 cut(s) | 289, 670, 876, 1045, 1515, 1618 |
| BcnI | CCSGG | 3 cut(s) | 578, 1087, 1468 |
| BcoDI | GTCTC | 1 cut(s) | 1553 |
| BcuI | ACTAGT | 1 cut(s) | 662 |
| BfaI | CTAG | 5 cut(s) | 155, 611, 663, 1118, 1527 |
| BfmI | CTRYAG | 2 cut(s) | 889, 1386 |
| BfoI | RGCGCY | 1 cut(s) | 907 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1005 |
| BglII | AGATCT | 1 cut(s) | 313 |
| BlpI | GCTNAGC | 1 cut(s) | 1140 |
| BmcAI | AGTACT | 1 cut(s) | 617 |
| Bme1390I | CCNGG | 9 cut(s) | 289, 578, 670, 876, 1045, 1087, 1468, 1515, 1618 |
| Bme18I | GGWCC | 2 cut(s) | 719, 1470 |
| BmgT120I | GGNCC | 8 cut(s) | 117, 158, 719, 1076, 1077, 1088, 1465, 1470 |
| BmiI | GGNNCC | 8 cut(s) | 6, 73, 85, 226, 1023, 1078, 1079, 1406 |
| BmrFI | CCNGG | 9 cut(s) | 289, 578, 670, 876, 1045, 1087, 1468, 1515, 1618 |
| BmrI | ACTGGG | 2 cut(s) | 1144, 1639 |
| BmsI | GCATC | 2 cut(s) | 801, 1222 |
| BmuI | ACTGGG | 2 cut(s) | 1144, 1639 |
| BpmI | CTGGAG | 1 cut(s) | 1305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1140 |
| BpuMI | CCSGG | 3 cut(s) | 578, 1087, 1468 |
| Bsa29I | ATCGAT | 3 cut(s) | 27, 354, 1393 |
| BsaWI | WCCGGW | 1 cut(s) | 1691 |
| Bse118I | RCCGGY | 4 cut(s) | 494, 593, 1096, 1267 |
| Bse1I | ACTGG | 4 cut(s) | 329, 623, 1139, 1634 |
| BseAI | TCCGGA | 1 cut(s) | 1691 |
| BseBI | CCWGG | 6 cut(s) | 289, 670, 876, 1045, 1515, 1618 |
| BseCI | ATCGAT | 3 cut(s) | 27, 354, 1393 |
| BseGI | GGATG | 4 cut(s) | 761, 811, 1153, 1237 |
| BseMII | CTCAG | 3 cut(s) | 1154, 1218, 1304 |
| BseNI | ACTGG | 4 cut(s) | 329, 623, 1139, 1634 |
| BseRI | GAGGAG | 2 cut(s) | 1559, 1678 |
| BseSI | GKGCMC | 2 cut(s) | 229, 1080 |
| BseX3I | CGGCCG | 1 cut(s) | 183 |
| BseXI | GCAGC | 8 cut(s) | 344, 388, 689, 937, 1333, 1336, 1339, 1486 |
| BseYI | CCCAGC | 2 cut(s) | 219, 1245 |
| BsgI | GTGCAG | 1 cut(s) | 625 |
| Bsh1285I | CGRYCG | 2 cut(s) | 186, 594 |
| BshFI | GGCC | 9 cut(s) | 118, 160, 185, 207, 259, 1008, 1078, 1090, 1466 |
| BshNI | GGYRCC | 3 cut(s) | 83, 224, 1021 |
| BshVI | ATCGAT | 3 cut(s) | 27, 354, 1393 |
| BsiEI | CGRYCG | 2 cut(s) | 186, 594 |
| BsiHKAI | GWGCWC | 2 cut(s) | 585, 1329 |
| BsmAI | GTCTC | 1 cut(s) | 1553 |
| BsmBI | CGTCTC | 1 cut(s) | 1553 |
| BsmI | GAATGC | 2 cut(s) | 90, 334 |
| BsnI | GGCC | 9 cut(s) | 118, 160, 185, 207, 259, 1008, 1078, 1090, 1466 |
| Bsp120I | GGGCCC | 1 cut(s) | 1076 |
| Bsp1286I | GDGCHC | 6 cut(s) | 229, 585, 717, 1080, 1141, 1329 |
| Bsp13I | TCCGGA | 1 cut(s) | 1691 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1140 |
| Bsp68I | TCGCGA | 2 cut(s) | 297, 900 |
| BspANI | GGCC | 9 cut(s) | 118, 160, 185, 207, 259, 1008, 1078, 1090, 1466 |
| BspCNI | CTCAG | 3 cut(s) | 1153, 1219, 1303 |
| BspDI | ATCGAT | 3 cut(s) | 27, 354, 1393 |
| BspEI | TCCGGA | 1 cut(s) | 1691 |
| BspLI | GGNNCC | 8 cut(s) | 6, 73, 85, 226, 1023, 1078, 1079, 1406 |
| BspPI | GGATC | 5 cut(s) | 875, 953, 1236, 1389, 1632 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 224, 1021 |
| BsrBI | CCGCTC | 2 cut(s) | 397, 1549 |
| BsrFI | RCCGGY | 4 cut(s) | 494, 593, 1096, 1267 |
| BsrI | ACTGG | 4 cut(s) | 329, 623, 1139, 1634 |
| BssAI | RCCGGY | 4 cut(s) | 494, 593, 1096, 1267 |
| BssSI | CACGAG | 1 cut(s) | 746 |
| Bst2BI | CACGAG | 1 cut(s) | 746 |
| Bst2UI | CCWGG | 6 cut(s) | 289, 670, 876, 1045, 1515, 1618 |
| Bst4CI | ACNGT | 3 cut(s) | 893, 1387, 1455 |
| Bst6I | CTCTTC | 1 cut(s) | 1257 |
| BstDEI | CTNAG | 4 cut(s) | 962, 1140, 1227, 1290 |
| BstF5I | GGATG | 4 cut(s) | 761, 811, 1153, 1237 |
| BstH2I | RGCGCY | 1 cut(s) | 907 |
| BstHHI | GCGC | 6 cut(s) | 310, 906, 923, 1117, 1273, 1504 |
| BstMAI | GTCTC | 1 cut(s) | 1553 |
| BstMCI | CGRYCG | 2 cut(s) | 186, 594 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 182, 885, 1005, 1246, 1352, 1510 |
| BstNI | CCWGG | 6 cut(s) | 289, 670, 876, 1045, 1515, 1618 |
| BstSCI | CCNGG | 9 cut(s) | 287, 576, 668, 874, 1043, 1085, 1466, 1513, 1616 |
| BstSFI | CTRYAG | 2 cut(s) | 889, 1386 |
| BstSLI | GKGCMC | 2 cut(s) | 229, 1080 |
| BstV1I | GCAGC | 8 cut(s) | 344, 388, 689, 937, 1333, 1336, 1339, 1486 |
| BstX2I | RGATCY | 1 cut(s) | 313 |
| BstYI | RGATCY | 1 cut(s) | 313 |
| BstZI | CGGCCG | 1 cut(s) | 183 |
| Bsu15I | ATCGAT | 3 cut(s) | 27, 354, 1393 |
| BsuRI | GGCC | 9 cut(s) | 118, 160, 185, 207, 259, 1008, 1078, 1090, 1466 |
| BsuTUI | ATCGAT | 3 cut(s) | 27, 354, 1393 |
| BtsCI | GGATG | 4 cut(s) | 761, 811, 1153, 1237 |
| BtsIMutI | CAGTG | 3 cut(s) | 322, 898, 1627 |
| BtuMI | TCGCGA | 2 cut(s) | 297, 900 |
| CfoI | GCGC | 6 cut(s) | 310, 906, 923, 1117, 1273, 1504 |
| Cfr10I | RCCGGY | 4 cut(s) | 494, 593, 1096, 1267 |
| Cfr13I | GGNCC | 8 cut(s) | 117, 158, 719, 1076, 1077, 1088, 1465, 1470 |
| ClaI | ATCGAT | 3 cut(s) | 27, 354, 1393 |
| CpoI | CGGWCCG | 1 cut(s) | 1470 |
| CseI | GACGC | 2 cut(s) | 182, 197 |
| Csp6I | GTAC | 6 cut(s) | 84, 616, 666, 757, 796, 1036 |
| CspI | CGGWCCG | 1 cut(s) | 1470 |
| CviAII | CATG | 1 cut(s) | 527 |
| CviQI | GTAC | 6 cut(s) | 84, 616, 666, 757, 796, 1036 |
| DdeI | CTNAG | 4 cut(s) | 962, 1140, 1227, 1290 |
| EaeI | YGGCCR | 2 cut(s) | 183, 257 |
| EagI | CGGCCG | 1 cut(s) | 183 |
| Eam1104I | CTCTTC | 1 cut(s) | 1257 |
| EarI | CTCTTC | 1 cut(s) | 1257 |
| Ecl136II | GAGCTC | 1 cut(s) | 1327 |
| EclXI | CGGCCG | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 4 cut(s) | 717, 1080, 1141, 1329 |
| Eco47I | GGWCC | 2 cut(s) | 719, 1470 |
| Eco47III | AGCGCT | 1 cut(s) | 905 |
| Eco52I | CGGCCG | 1 cut(s) | 183 |
| Eco53kI | GAGCTC | 1 cut(s) | 1327 |
| EcoICRI | GAGCTC | 1 cut(s) | 1327 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1077 |
| EcoRII | CCWGG | 6 cut(s) | 287, 668, 874, 1043, 1513, 1616 |
| EcoT38I | GRGCYC | 4 cut(s) | 717, 1080, 1141, 1329 |
| Esp3I | CGTCTC | 1 cut(s) | 1553 |
| FaeI | CATG | 1 cut(s) | 530 |
| FatI | CATG | 1 cut(s) | 526 |
| FauI | CCCGC | 4 cut(s) | 95, 297, 1137, 1650 |
| FokI | GGATG | 4 cut(s) | 748, 818, 1160, 1244 |
| FriOI | GRGCYC | 4 cut(s) | 717, 1080, 1141, 1329 |
| FspBI | CTAG | 5 cut(s) | 155, 611, 663, 1118, 1527 |
| GlaI | GCGC | 6 cut(s) | 309, 905, 922, 1116, 1272, 1503 |
| GsaI | CCCAGC | 2 cut(s) | 223, 1249 |
| GsuI | CTGGAG | 1 cut(s) | 1305 |
| HaeII | RGCGCY | 1 cut(s) | 907 |
| HaeIII | GGCC | 9 cut(s) | 118, 160, 185, 207, 259, 1008, 1078, 1090, 1466 |
| HgaI | GACGC | 2 cut(s) | 182, 197 |
| HhaI | GCGC | 6 cut(s) | 310, 906, 923, 1117, 1273, 1504 |
| Hin1II | CATG | 1 cut(s) | 530 |
| Hin6I | GCGC | 6 cut(s) | 308, 904, 921, 1115, 1271, 1502 |
| HinP1I | GCGC | 6 cut(s) | 308, 904, 921, 1115, 1271, 1502 |
| HindIII | AAGCTT | 1 cut(s) | 1427 |
| HinfI | GANTC | 8 cut(s) | 132, 450, 539, 600, 673, 843, 1071, 1518 |
| HphI | GGTGA | 5 cut(s) | 484, 544, 694, 1500, 1672 |
| Hpy166II | GTNNAC | 1 cut(s) | 547 |
| Hpy188I | TCNGA | 9 cut(s) | 139, 152, 719, 778, 1228, 1474, 1624, 1653, 1686 |
| Hpy188III | TCNNGA | 8 cut(s) | 32, 296, 803, 899, 1322, 1398, 1527, 1692 |
| Hpy8I | GTNNAC | 1 cut(s) | 547 |
| Hpy99I | CGWCG | 2 cut(s) | 191, 1447 |
| HpyAV | CCTTC | 6 cut(s) | 137, 658, 809, 881, 1395, 1416 |
| HpyCH4III | ACNGT | 3 cut(s) | 893, 1387, 1455 |
| HpyCH4V | TGCA | 8 cut(s) | 46, 332, 526, 642, 654, 705, 1333, 1355 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 182, 885, 1005, 1246, 1352, 1510 |
| HpyF3I | CTNAG | 4 cut(s) | 962, 1140, 1227, 1290 |
| Hsp92II | CATG | 1 cut(s) | 530 |
| HspAI | GCGC | 6 cut(s) | 308, 904, 921, 1115, 1271, 1502 |
| Kpn2I | TCCGGA | 1 cut(s) | 1691 |
| KpnI | GGTACC | 1 cut(s) | 87 |
| KroI | GCCGGC | 1 cut(s) | 1096 |
| KroNI | GCCGGC | 1 cut(s) | 1098 |
| LmnI | GCTCC | 6 cut(s) | 10, 129, 580, 1332, 1410, 1546 |
| Lsp1109I | GCAGC | 8 cut(s) | 344, 388, 689, 937, 1333, 1336, 1339, 1486 |
| LweI | GCATC | 2 cut(s) | 801, 1222 |
| MaeI | CTAG | 5 cut(s) | 155, 611, 663, 1118, 1527 |
| MaeIII | GTNAC | 2 cut(s) | 682, 1506 |
| MbiI | CCGCTC | 2 cut(s) | 397, 1549 |
| MboII | GAAGA | 8 cut(s) | 25, 50, 362, 628, 668, 852, 1118, 1244 |
| MfeI | CAATTG | 1 cut(s) | 1016 |
| MflI | RGATCY | 1 cut(s) | 313 |
| MhlI | GDGCHC | 6 cut(s) | 229, 585, 717, 1080, 1141, 1329 |
| MluCI | AATT | 5 cut(s) | 41, 533, 629, 1001, 1016 |
| MmeI | TCCRAC | 2 cut(s) | 162, 1602 |
| MroI | TCCGGA | 1 cut(s) | 1691 |
| MroNI | GCCGGC | 1 cut(s) | 1096 |
| MseI | TTAA | 2 cut(s) | 1382, 1431 |
| MslI | CAYNNNNRTG | 1 cut(s) | 327 |
| MspA1I | CMGCKG | 1 cut(s) | 1144 |
| MspR9I | CCNGG | 9 cut(s) | 289, 578, 670, 876, 1045, 1087, 1468, 1515, 1618 |
| MunI | CAATTG | 1 cut(s) | 1016 |
| Mva1269I | GAATGC | 2 cut(s) | 90, 334 |
| MvaI | CCWGG | 6 cut(s) | 289, 670, 876, 1045, 1515, 1618 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 182, 885, 1005, 1246, 1352, 1510 |
| NaeI | GCCGGC | 1 cut(s) | 1098 |
| NciI | CCSGG | 3 cut(s) | 578, 1087, 1468 |
| NgoMIV | GCCGGC | 1 cut(s) | 1096 |
| NlaIII | CATG | 1 cut(s) | 530 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 73, 85, 226, 1023, 1078, 1079, 1406 |
| NmuCI | GTSAC | 2 cut(s) | 682, 1506 |
| NruI | TCGCGA | 2 cut(s) | 297, 900 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 563, 1308, 1559 |
| PctI | GAATGC | 2 cut(s) | 90, 334 |
| PdiI | GCCGGC | 1 cut(s) | 1098 |
| PfeI | GAWTC | 8 cut(s) | 132, 450, 539, 600, 673, 843, 1071, 1518 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 728 |
| PsiI | TTATAA | 1 cut(s) | 1365 |
| Psp124BI | GAGCTC | 1 cut(s) | 1329 |
| Psp6I | CCWGG | 6 cut(s) | 287, 668, 874, 1043, 1513, 1616 |
| PspFI | CCCAGC | 2 cut(s) | 219, 1245 |
| PspGI | CCWGG | 6 cut(s) | 287, 668, 874, 1043, 1513, 1616 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 73, 85, 226, 1023, 1078, 1079, 1406 |
| PspOMI | GGGCCC | 1 cut(s) | 1076 |
| PspPI | GGNCC | 8 cut(s) | 117, 158, 719, 1076, 1077, 1088, 1465, 1470 |
| PsuI | RGATCY | 1 cut(s) | 313 |
| RruI | TCGCGA | 2 cut(s) | 297, 900 |
| RsaI | GTAC | 6 cut(s) | 85, 617, 667, 758, 797, 1037 |
| RsaNI | GTAC | 6 cut(s) | 84, 616, 666, 757, 796, 1036 |
| RseI | CAYNNNNRTG | 1 cut(s) | 327 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1470 |
| RsrII | CGGWCCG | 1 cut(s) | 1470 |
| SacI | GAGCTC | 1 cut(s) | 1329 |
| SaqAI | TTAA | 2 cut(s) | 1382, 1431 |
| Sau96I | GGNCC | 8 cut(s) | 117, 158, 719, 1076, 1077, 1088, 1465, 1470 |
| ScaI | AGTACT | 1 cut(s) | 617 |
| ScrFI | CCNGG | 9 cut(s) | 289, 578, 670, 876, 1045, 1087, 1468, 1515, 1618 |
| SduI | GDGCHC | 6 cut(s) | 229, 585, 717, 1080, 1141, 1329 |
| SfaNI | GCATC | 2 cut(s) | 801, 1222 |
| SfcI | CTRYAG | 2 cut(s) | 889, 1386 |
| SinI | GGWCC | 2 cut(s) | 719, 1470 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 327 |
| SpeI | ACTAGT | 1 cut(s) | 662 |
| Sse9I | AATT | 5 cut(s) | 41, 533, 629, 1001, 1016 |
| SspI | AATATT | 1 cut(s) | 831 |
| SspMI | CTAG | 5 cut(s) | 155, 611, 663, 1118, 1527 |
| SstI | GAGCTC | 1 cut(s) | 1329 |
| StyD4I | CCNGG | 9 cut(s) | 287, 576, 668, 874, 1043, 1085, 1466, 1513, 1616 |
| TaaI | ACNGT | 3 cut(s) | 893, 1387, 1455 |
| TaqI | TCGA | 7 cut(s) | 27, 130, 238, 354, 537, 557, 1393 |
| TaqII | GACCGA | 1 cut(s) | 443 |
| TasI | AATT | 5 cut(s) | 41, 533, 629, 1001, 1016 |
| TatI | WGTACW | 1 cut(s) | 615 |
| TauI | GCSGC | 5 cut(s) | 381, 384, 397, 1166, 1494 |
| TfiI | GAWTC | 8 cut(s) | 132, 450, 539, 600, 673, 843, 1071, 1518 |
| Tru1I | TTAA | 2 cut(s) | 1382, 1431 |
| Tru9I | TTAA | 2 cut(s) | 1382, 1431 |
| TscAI | CASTG | 3 cut(s) | 329, 898, 1634 |
| TseFI | GTSAC | 2 cut(s) | 682, 1506 |
| TseI | GCWGC | 8 cut(s) | 332, 401, 702, 950, 1346, 1349, 1352, 1499 |
| Tsp45I | GTSAC | 2 cut(s) | 682, 1506 |
| TspDTI | ATGAA | 2 cut(s) | 83, 1167 |
| TspGWI | ACGGA | 1 cut(s) | 1689 |
| TspRI | CASTG | 3 cut(s) | 329, 898, 1634 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 728 |
| VpaK11BI | GGWCC | 2 cut(s) | 719, 1470 |
| XapI | RAATTY | 1 cut(s) | 629 |
| XbaI | TCTAGA | 1 cut(s) | 1526 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1292 |
| XspI | CTAG | 5 cut(s) | 155, 611, 663, 1118, 1527 |
| ZrmI | AGTACT | 1 cut(s) | 617 |