Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 760 |
| Acc36I | ACCTGC | 1 cut(s) | 251 |
| Acc65I | GGTACC | 1 cut(s) | 638 |
| AccB1I | GGYRCC | 2 cut(s) | 638, 1153 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 859 |
| AccI | GTMKAC | 1 cut(s) | 1254 |
| AclWI | GGATC | 5 cut(s) | 275, 787, 800, 1035, 1085 |
| AcoI | YGGCCR | 2 cut(s) | 182, 673 |
| AcsI | RAATTY | 1 cut(s) | 785 |
| AcuI | CTGAAG | 1 cut(s) | 1320 |
| AcyI | GRCGYC | 3 cut(s) | 69, 1173, 1284 |
| AfaI | GTAC | 5 cut(s) | 640, 702, 890, 929, 950 |
| AgsI | TTSAA | 4 cut(s) | 992, 1148, 1393, 1418 |
| AjnI | CCWGG | 5 cut(s) | 212, 582, 641, 1006, 1175 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 789, 821 |
| AluBI | AGCT | 4 cut(s) | 144, 856, 1098, 1105 |
| AluI | AGCT | 4 cut(s) | 144, 856, 1098, 1105 |
| Alw21I | GWGCWC | 1 cut(s) | 558 |
| Alw26I | GTCTC | 2 cut(s) | 746, 1336 |
| AlwI | GGATC | 5 cut(s) | 275, 787, 800, 1035, 1085 |
| Ama87I | CYCGRG | 1 cut(s) | 689 |
| ApaI | GGGCCC | 2 cut(s) | 712, 1212 |
| ApeKI | GCWGC | 4 cut(s) | 257, 504, 1082, 1373 |
| ApoI | RAATTY | 1 cut(s) | 785 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 359, 391, 1352, 1384 |
| Asp718I | GGTACC | 1 cut(s) | 638 |
| AspLEI | GCGC | 6 cut(s) | 235, 1034, 1036, 1038, 1055, 1249 |
| AsuC2I | CCSGG | 1 cut(s) | 551 |
| AsuHPI | GGTGA | 2 cut(s) | 385, 409 |
| AvaI | CYCGRG | 1 cut(s) | 689 |
| AvaII | GGWCC | 2 cut(s) | 112, 850 |
| BaeGI | GKGCMC | 2 cut(s) | 712, 1212 |
| BalI | TGGCCA | 1 cut(s) | 184 |
| BamHI | GGATCC | 1 cut(s) | 792 |
| BanI | GGYRCC | 2 cut(s) | 638, 1153 |
| BanII | GRGCYC | 6 cut(s) | 444, 690, 712, 1212, 1273, 1351 |
| Bbv12I | GWGCWC | 1 cut(s) | 558 |
| BbvI | GCAGC | 4 cut(s) | 269, 516, 1069, 1385 |
| BccI | CCATC | 9 cut(s) | 193, 200, 284, 422, 437, 841, 988, 1286, 1385 |
| BceAI | ACGGC | 6 cut(s) | 100, 451, 675, 688, 931, 1271 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1352, 1386 |
| BciT130I | CCWGG | 5 cut(s) | 214, 584, 643, 1008, 1177 |
| BciVI | GTATCC | 1 cut(s) | 1301 |
| BcnI | CCSGG | 1 cut(s) | 551 |
| BcoDI | GTCTC | 2 cut(s) | 746, 1336 |
| BfaI | CTAG | 4 cut(s) | 242, 653, 704, 756 |
| BfuAI | ACCTGC | 1 cut(s) | 251 |
| BfuI | GTATCC | 1 cut(s) | 1301 |
| BglII | AGATCT | 1 cut(s) | 238 |
| BlpI | GCTNAGC | 1 cut(s) | 1350 |
| Bme1390I | CCNGG | 6 cut(s) | 214, 551, 584, 643, 1008, 1177 |
| Bme18I | GGWCC | 2 cut(s) | 112, 850 |
| BmeT110I | CYCGRG | 1 cut(s) | 689 |
| BmiI | GGNNCC | 9 cut(s) | 39, 640, 709, 710, 769, 794, 1155, 1210, 1211 |
| BmrFI | CCNGG | 6 cut(s) | 214, 551, 584, 643, 1008, 1177 |
| BmrI | ACTGGG | 3 cut(s) | 44, 1227, 1276 |
| BmsI | GCATC | 4 cut(s) | 43, 751, 933, 1432 |
| BmuI | ACTGGG | 3 cut(s) | 44, 1227, 1276 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1316, 1348 |
| BpmI | CTGGAG | 1 cut(s) | 605 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1350 |
| BpuMI | CCSGG | 1 cut(s) | 551 |
| Bsa29I | ATCGAT | 1 cut(s) | 279 |
| BsaBI | GATNNNNATC | 1 cut(s) | 979 |
| BsaHI | GRCGYC | 3 cut(s) | 69, 1173, 1284 |
| BsaI | GGTCTC | 1 cut(s) | 1336 |
| BsaJI | CCNNGG | 3 cut(s) | 486, 1086, 1287 |
| BsaWI | WCCGGW | 2 cut(s) | 29, 109 |
| Bse118I | RCCGGY | 4 cut(s) | 419, 566, 844, 1228 |
| Bse1I | ACTGG | 6 cut(s) | 39, 92, 640, 1155, 1222, 1271 |
| Bse3DI | GCAATG | 1 cut(s) | 72 |
| Bse8I | GATNNNNATC | 1 cut(s) | 979 |
| BseBI | CCWGG | 5 cut(s) | 214, 584, 643, 1008, 1177 |
| BseCI | ATCGAT | 1 cut(s) | 279 |
| BseDI | CCNNGG | 3 cut(s) | 486, 1086, 1287 |
| BseGI | GGATG | 6 cut(s) | 185, 742, 893, 943, 1297, 1447 |
| BseJI | GATNNNNATC | 1 cut(s) | 979 |
| BseMI | GCAATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 2 cut(s) | 1364, 1449 |
| BseNI | ACTGG | 6 cut(s) | 39, 92, 640, 1155, 1222, 1271 |
| BsePI | GCGCGC | 2 cut(s) | 1032, 1034 |
| BseRI | GAGGAG | 1 cut(s) | 1340 |
| BseSI | GKGCMC | 2 cut(s) | 712, 1212 |
| BseX3I | CGGCCG | 1 cut(s) | 673 |
| BseXI | GCAGC | 4 cut(s) | 269, 516, 1069, 1385 |
| BseYI | CCCAGC | 3 cut(s) | 144, 1344, 1455 |
| BsgI | GTGCAG | 1 cut(s) | 598 |
| Bsh1285I | CGRYCG | 3 cut(s) | 502, 567, 676 |
| BshNI | GGYRCC | 2 cut(s) | 638, 1153 |
| BshVI | ATCGAT | 1 cut(s) | 279 |
| BsiEI | CGRYCG | 3 cut(s) | 502, 567, 676 |
| BsiHKAI | GWGCWC | 1 cut(s) | 558 |
| BsiHKCI | CYCGRG | 1 cut(s) | 689 |
| BsiSI | CCGG | 8 cut(s) | 30, 62, 110, 420, 550, 567, 845, 1229 |
| BslFI | GGGAC | 1 cut(s) | 1370 |
| BsmAI | GTCTC | 2 cut(s) | 746, 1336 |
| BsmFI | GGGAC | 1 cut(s) | 1370 |
| Bso31I | GGTCTC | 1 cut(s) | 1336 |
| BsoBI | CYCGRG | 1 cut(s) | 689 |
| Bsp120I | GGGCCC | 2 cut(s) | 708, 1208 |
| Bsp1286I | GDGCHC | 7 cut(s) | 444, 558, 690, 712, 1212, 1273, 1351 |
| Bsp143I | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1350 |
| Bsp19I | CCATGG | 1 cut(s) | 486 |
| Bsp68I | TCGCGA | 1 cut(s) | 222 |
| BspCNI | CTCAG | 2 cut(s) | 1363, 1448 |
| BspDI | ATCGAT | 1 cut(s) | 279 |
| BspLI | GGNNCC | 9 cut(s) | 39, 640, 709, 710, 769, 794, 1155, 1210, 1211 |
| BspMI | ACCTGC | 1 cut(s) | 251 |
| BspPI | GGATC | 5 cut(s) | 275, 787, 800, 1035, 1085 |
| BspT107I | GGYRCC | 2 cut(s) | 638, 1153 |
| BspTNI | GGTCTC | 1 cut(s) | 1336 |
| BsrDI | GCAATG | 1 cut(s) | 72 |
| BsrFI | RCCGGY | 4 cut(s) | 419, 566, 844, 1228 |
| BsrI | ACTGG | 6 cut(s) | 39, 92, 640, 1155, 1222, 1271 |
| BssAI | RCCGGY | 4 cut(s) | 419, 566, 844, 1228 |
| BssECI | CCNNGG | 3 cut(s) | 486, 1086, 1287 |
| BssHII | GCGCGC | 2 cut(s) | 1032, 1034 |
| BssMI | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| BssNI | GRCGYC | 3 cut(s) | 69, 1173, 1284 |
| BssT1I | CCWWGG | 1 cut(s) | 486 |
| Bst2UI | CCWGG | 5 cut(s) | 214, 584, 643, 1008, 1177 |
| Bst4CI | ACNGT | 1 cut(s) | 500 |
| Bst6I | CTCTTC | 2 cut(s) | 654, 1467 |
| BstACI | GRCGYC | 3 cut(s) | 69, 1173, 1284 |
| BstDEI | CTNAG | 3 cut(s) | 1094, 1350, 1435 |
| BstDSI | CCRYGG | 2 cut(s) | 486, 1287 |
| BstF5I | GGATG | 6 cut(s) | 185, 742, 893, 943, 1297, 1447 |
| BstHHI | GCGC | 6 cut(s) | 235, 1034, 1036, 1038, 1055, 1249 |
| BstKTI | GATC | 6 cut(s) | 241, 283, 795, 1030, 1059, 1080 |
| BstMAI | GTCTC | 2 cut(s) | 746, 1336 |
| BstMBI | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| BstMCI | CGRYCG | 3 cut(s) | 502, 567, 676 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 62, 312, 448, 765, 1017, 1040 |
| BstNI | CCWGG | 5 cut(s) | 214, 584, 643, 1008, 1177 |
| BstNSI | RCATGY | 2 cut(s) | 724, 763 |
| BstSCI | CCNGG | 6 cut(s) | 212, 549, 582, 641, 1006, 1175 |
| BstSLI | GKGCMC | 2 cut(s) | 712, 1212 |
| BstV1I | GCAGC | 4 cut(s) | 269, 516, 1069, 1385 |
| BstX2I | RGATCY | 2 cut(s) | 238, 792 |
| BstYI | RGATCY | 2 cut(s) | 238, 792 |
| BstZI | CGGCCG | 1 cut(s) | 673 |
| Bsu15I | ATCGAT | 1 cut(s) | 279 |
| BsuI | GTATCC | 1 cut(s) | 1301 |
| BsuTUI | ATCGAT | 1 cut(s) | 279 |
| BtgI | CCRYGG | 2 cut(s) | 486, 1287 |
| BtgZI | GCGATG | 2 cut(s) | 819, 837 |
| BtsCI | GGATG | 6 cut(s) | 185, 742, 893, 943, 1297, 1447 |
| BtsIMutI | CAGTG | 2 cut(s) | 633, 872 |
| BtuMI | TCGCGA | 1 cut(s) | 222 |
| BveI | ACCTGC | 1 cut(s) | 251 |
| CfoI | GCGC | 6 cut(s) | 235, 1034, 1036, 1038, 1055, 1249 |
| Cfr10I | RCCGGY | 4 cut(s) | 419, 566, 844, 1228 |
| ClaI | ATCGAT | 1 cut(s) | 279 |
| CseI | GACGC | 3 cut(s) | 77, 1181, 1292 |
| Csp6I | GTAC | 5 cut(s) | 639, 701, 889, 928, 949 |
| CviAII | CATG | 7 cut(s) | 128, 285, 452, 487, 721, 760, 964 |
| CviQI | GTAC | 5 cut(s) | 639, 701, 889, 928, 949 |
| DdeI | CTNAG | 3 cut(s) | 1094, 1350, 1435 |
| DpnI | GATC | 6 cut(s) | 240, 282, 794, 1029, 1058, 1079 |
| DpnII | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 760 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 760 |
| EaeI | YGGCCR | 2 cut(s) | 182, 673 |
| EagI | CGGCCG | 1 cut(s) | 673 |
| Eam1104I | CTCTTC | 2 cut(s) | 654, 1467 |
| EarI | CTCTTC | 2 cut(s) | 654, 1467 |
| EciI | GGCGGA | 4 cut(s) | 86, 585, 806, 863 |
| EclXI | CGGCCG | 1 cut(s) | 673 |
| Eco130I | CCWWGG | 1 cut(s) | 486 |
| Eco24I | GRGCYC | 6 cut(s) | 444, 690, 712, 1212, 1273, 1351 |
| Eco31I | GGTCTC | 1 cut(s) | 1336 |
| Eco47I | GGWCC | 2 cut(s) | 112, 850 |
| Eco52I | CGGCCG | 1 cut(s) | 673 |
| Eco57I | CTGAAG | 1 cut(s) | 1320 |
| Eco88I | CYCGRG | 1 cut(s) | 689 |
| EcoO109I | RGGNCCY | 3 cut(s) | 708, 709, 1209 |
| EcoRI | GAATTC | 1 cut(s) | 785 |
| EcoRII | CCWGG | 5 cut(s) | 212, 582, 641, 1006, 1175 |
| EcoT14I | CCWWGG | 1 cut(s) | 486 |
| EcoT22I | ATGCAT | 1 cut(s) | 744 |
| EcoT38I | GRGCYC | 6 cut(s) | 444, 690, 712, 1212, 1273, 1351 |
| ErhI | CCWWGG | 1 cut(s) | 486 |
| FaeI | CATG | 7 cut(s) | 131, 288, 455, 490, 724, 763, 967 |
| FaqI | GGGAC | 1 cut(s) | 1370 |
| FatI | CATG | 7 cut(s) | 127, 284, 451, 486, 720, 759, 963 |
| FauI | CCCGC | 4 cut(s) | 208, 254, 849, 1347 |
| FblI | GTMKAC | 1 cut(s) | 1254 |
| FokI | GGATG | 6 cut(s) | 172, 729, 880, 950, 1304, 1454 |
| FriOI | GRGCYC | 6 cut(s) | 444, 690, 712, 1212, 1273, 1351 |
| FspBI | CTAG | 4 cut(s) | 242, 653, 704, 756 |
| GlaI | GCGC | 6 cut(s) | 234, 1033, 1035, 1037, 1054, 1248 |
| GsaI | CCCAGC | 3 cut(s) | 148, 1348, 1459 |
| GsuI | CTGGAG | 1 cut(s) | 605 |
| HapII | CCGG | 8 cut(s) | 30, 62, 110, 420, 550, 567, 845, 1229 |
| HgaI | GACGC | 3 cut(s) | 77, 1181, 1292 |
| HhaI | GCGC | 6 cut(s) | 235, 1034, 1036, 1038, 1055, 1249 |
| Hin1I | GRCGYC | 3 cut(s) | 69, 1173, 1284 |
| Hin1II | CATG | 7 cut(s) | 131, 288, 455, 490, 724, 763, 967 |
| Hin6I | GCGC | 6 cut(s) | 233, 1032, 1034, 1036, 1053, 1247 |
| HinP1I | GCGC | 6 cut(s) | 233, 1032, 1034, 1036, 1053, 1247 |
| HincII | GTYRAC | 1 cut(s) | 1255 |
| HindII | GTYRAC | 1 cut(s) | 1255 |
| HinfI | GANTC | 6 cut(s) | 12, 124, 464, 646, 975, 1203 |
| HpaII | CCGG | 8 cut(s) | 30, 62, 110, 420, 550, 567, 845, 1229 |
| HphI | GGTGA | 2 cut(s) | 385, 409 |
| Hpy166II | GTNNAC | 1 cut(s) | 1255 |
| Hpy188I | TCNGA | 6 cut(s) | 19, 119, 910, 1069, 1275, 1438 |
| Hpy188III | TCNNGA | 5 cut(s) | 221, 343, 751, 790, 1075 |
| Hpy8I | GTNNAC | 1 cut(s) | 1255 |
| Hpy99I | CGWCG | 4 cut(s) | 437, 686, 1175, 1364 |
| HpyAV | CCTTC | 4 cut(s) | 17, 114, 305, 1298 |
| HpyCH4III | ACNGT | 1 cut(s) | 500 |
| HpyCH4IV | ACGT | 1 cut(s) | 681 |
| HpyCH4V | TGCA | 6 cut(s) | 451, 600, 615, 627, 742, 1373 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 62, 312, 448, 765, 1017, 1040 |
| HpyF3I | CTNAG | 3 cut(s) | 1094, 1350, 1435 |
| HpySE526I | ACGT | 1 cut(s) | 681 |
| Hsp92I | GRCGYC | 3 cut(s) | 69, 1173, 1284 |
| Hsp92II | CATG | 7 cut(s) | 131, 288, 455, 490, 724, 763, 967 |
| HspAI | GCGC | 6 cut(s) | 233, 1032, 1034, 1036, 1053, 1247 |
| KpnI | GGTACC | 1 cut(s) | 642 |
| KroI | GCCGGC | 2 cut(s) | 844, 1228 |
| KroNI | GCCGGC | 2 cut(s) | 846, 1230 |
| Kzo9I | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| LmnI | GCTCC | 4 cut(s) | 9, 553, 843, 1117 |
| Lsp1109I | GCAGC | 4 cut(s) | 269, 516, 1069, 1385 |
| LweI | GCATC | 4 cut(s) | 43, 751, 933, 1432 |
| MaeI | CTAG | 4 cut(s) | 242, 653, 704, 756 |
| MaeII | ACGT | 1 cut(s) | 681 |
| MalI | GATC | 6 cut(s) | 240, 282, 794, 1029, 1058, 1079 |
| MauBI | CGCGCGCG | 1 cut(s) | 1032 |
| MboI | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| MboII | GAAGA | 8 cut(s) | 612, 641, 805, 984, 995, 1313, 1325, 1454 |
| MfeI | CAATTG | 1 cut(s) | 1339 |
| MflI | RGATCY | 2 cut(s) | 238, 792 |
| MhlI | GDGCHC | 7 cut(s) | 444, 558, 690, 712, 1212, 1273, 1351 |
| MlsI | TGGCCA | 1 cut(s) | 184 |
| MluCI | AATT | 7 cut(s) | 458, 472, 573, 785, 1133, 1339, 1388 |
| MluNI | TGGCCA | 1 cut(s) | 184 |
| MlyI | GAGTC | 2 cut(s) | 118, 640 |
| Mox20I | TGGCCA | 1 cut(s) | 184 |
| Mph1103I | ATGCAT | 1 cut(s) | 744 |
| MreI | CGCCGGCG | 1 cut(s) | 844 |
| MroNI | GCCGGC | 2 cut(s) | 844, 1228 |
| MscI | TGGCCA | 1 cut(s) | 184 |
| Msp20I | TGGCCA | 1 cut(s) | 184 |
| MspA1I | CMGCKG | 2 cut(s) | 249, 1354 |
| MspI | CCGG | 8 cut(s) | 30, 62, 110, 420, 550, 567, 845, 1229 |
| MspR9I | CCNGG | 6 cut(s) | 214, 551, 584, 643, 1008, 1177 |
| MunI | CAATTG | 1 cut(s) | 1339 |
| MvaI | CCWGG | 5 cut(s) | 214, 584, 643, 1008, 1177 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 62, 312, 448, 765, 1017, 1040 |
| NaeI | GCCGGC | 2 cut(s) | 846, 1230 |
| NciI | CCSGG | 1 cut(s) | 551 |
| NcoI | CCATGG | 1 cut(s) | 486 |
| NdeII | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| NgoMIV | GCCGGC | 2 cut(s) | 844, 1228 |
| NlaIII | CATG | 7 cut(s) | 131, 288, 455, 490, 724, 763, 967 |
| NlaIV | GGNNCC | 9 cut(s) | 39, 640, 709, 710, 769, 794, 1155, 1210, 1211 |
| NmeAIII | GCCGAG | 1 cut(s) | 1111 |
| NruI | TCGCGA | 1 cut(s) | 222 |
| NsiI | ATGCAT | 1 cut(s) | 744 |
| NspI | RCATGY | 2 cut(s) | 724, 763 |
| PaeR7I | CTCGAG | 1 cut(s) | 689 |
| PauI | GCGCGC | 2 cut(s) | 1032, 1034 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 678, 687, 1251 |
| PdiI | GCCGGC | 2 cut(s) | 846, 1230 |
| PfeI | GAWTC | 4 cut(s) | 12, 464, 975, 1203 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 859 |
| PfoI | TCCNGGA | 1 cut(s) | 582 |
| PleI | GAGTC | 2 cut(s) | 118, 640 |
| PpsI | GAGTC | 2 cut(s) | 118, 640 |
| Psp6I | CCWGG | 5 cut(s) | 212, 582, 641, 1006, 1175 |
| PspFI | CCCAGC | 3 cut(s) | 144, 1344, 1455 |
| PspGI | CCWGG | 5 cut(s) | 212, 582, 641, 1006, 1175 |
| PspN4I | GGNNCC | 9 cut(s) | 39, 640, 709, 710, 769, 794, 1155, 1210, 1211 |
| PspOMI | GGGCCC | 2 cut(s) | 708, 1208 |
| PspXI | VCTCGAGB | 1 cut(s) | 689 |
| PsuI | RGATCY | 2 cut(s) | 238, 792 |
| PteI | GCGCGC | 2 cut(s) | 1032, 1034 |
| RruI | TCGCGA | 1 cut(s) | 222 |
| RsaI | GTAC | 5 cut(s) | 640, 702, 890, 929, 950 |
| RsaNI | GTAC | 5 cut(s) | 639, 701, 889, 928, 949 |
| SalI | GTCGAC | 1 cut(s) | 1253 |
| Sau3AI | GATC | 6 cut(s) | 238, 280, 792, 1027, 1056, 1077 |
| SchI | GAGTC | 2 cut(s) | 118, 640 |
| ScrFI | CCNGG | 6 cut(s) | 214, 551, 584, 643, 1008, 1177 |
| SduI | GDGCHC | 7 cut(s) | 444, 558, 690, 712, 1212, 1273, 1351 |
| SfaNI | GCATC | 4 cut(s) | 43, 751, 933, 1432 |
| Sfr274I | CTCGAG | 1 cut(s) | 689 |
| SgrAI | CRCCGGYG | 1 cut(s) | 844 |
| SinI | GGWCC | 2 cut(s) | 112, 850 |
| SlaI | CTCGAG | 1 cut(s) | 689 |
| SmlI | CTYRAG | 1 cut(s) | 689 |
| SmoI | CTYRAG | 1 cut(s) | 689 |
| Sse9I | AATT | 7 cut(s) | 458, 472, 573, 785, 1133, 1339, 1388 |
| SspMI | CTAG | 4 cut(s) | 242, 653, 704, 756 |
| StyD4I | CCNGG | 6 cut(s) | 212, 549, 582, 641, 1006, 1175 |
| StyI | CCWWGG | 1 cut(s) | 486 |
| TaaI | ACNGT | 1 cut(s) | 500 |
| TaiI | ACGT | 1 cut(s) | 684 |
| TaqI | TCGA | 8 cut(s) | 10, 163, 279, 432, 482, 690, 750, 1254 |
| TasI | AATT | 7 cut(s) | 458, 472, 573, 785, 1133, 1339, 1388 |
| TauI | GCSGC | 6 cut(s) | 306, 309, 678, 822, 879, 1053 |
| TfiI | GAWTC | 4 cut(s) | 12, 464, 975, 1203 |
| TscAI | CASTG | 2 cut(s) | 640, 872 |
| TseI | GCWGC | 4 cut(s) | 257, 504, 1082, 1373 |
| TspDTI | ATGAA | 1 cut(s) | 595 |
| TspGWI | ACGGA | 3 cut(s) | 457, 735, 1040 |
| TspRI | CASTG | 2 cut(s) | 640, 872 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 859 |
| VpaK11BI | GGWCC | 2 cut(s) | 112, 850 |
| XapI | RAATTY | 1 cut(s) | 785 |
| XceI | RCATGY | 2 cut(s) | 724, 763 |
| XhoI | CTCGAG | 1 cut(s) | 689 |
| XmiI | GTMKAC | 1 cut(s) | 1254 |
| XspI | CTAG | 4 cut(s) | 242, 653, 704, 756 |
| Zsp2I | ATGCAT | 1 cut(s) | 744 |