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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 7, 413 |
| AccII | CGCG | 4 cut(s) | 209, 527, 540, 562 |
| AciI | CCGC | 7 cut(s) | 20, 209, 253, 276, 538, 540, 560 |
| AclWI | GGATC | 2 cut(s) | 478, 491 |
| AcoI | YGGCCR | 3 cut(s) | 159, 378, 557 |
| AcyI | GRCGYC | 1 cut(s) | 414 |
| AfaI | GTAC | 2 cut(s) | 321, 434 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 139, 233, 347 |
| AgeI | ACCGGT | 1 cut(s) | 340 |
| AgsI | TTSAA | 2 cut(s) | 57, 502 |
| AhlI | ACTAGT | 1 cut(s) | 461 |
| AluBI | AGCT | 1 cut(s) | 224 |
| AluI | AGCT | 1 cut(s) | 224 |
| Alw21I | GWGCWC | 2 cut(s) | 80, 216 |
| Alw26I | GTCTC | 2 cut(s) | 452, 472 |
| AlwI | GGATC | 2 cut(s) | 478, 491 |
| AoxI | GGCC | 7 cut(s) | 126, 159, 194, 378, 438, 473, 557 |
| ApeKI | GCWGC | 1 cut(s) | 221 |
| AsiGI | ACCGGT | 1 cut(s) | 340 |
| AspLEI | GCGC | 1 cut(s) | 416 |
| AspS9I | GGNCC | 1 cut(s) | 195 |
| AsuC2I | CCSGG | 1 cut(s) | 257 |
| AsuHPI | GGTGA | 3 cut(s) | 108, 114, 174 |
| BalI | TGGCCA | 1 cut(s) | 161 |
| BamHI | GGATCC | 1 cut(s) | 483 |
| BanI | GGYRCC | 2 cut(s) | 7, 413 |
| BanII | GRGCYC | 1 cut(s) | 395 |
| Bbv12I | GWGCWC | 2 cut(s) | 80, 216 |
| BbvI | GCAGC | 1 cut(s) | 233 |
| BccI | CCATC | 4 cut(s) | 127, 133, 181, 530 |
| BceAI | ACGGC | 2 cut(s) | 234, 393 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 67, 101 |
| BcnI | CCSGG | 1 cut(s) | 257 |
| BcoDI | GTCTC | 2 cut(s) | 452, 472 |
| BcuI | ACTAGT | 1 cut(s) | 461 |
| BfaI | CTAG | 2 cut(s) | 273, 462 |
| BfoI | RGCGCY | 1 cut(s) | 417 |
| BisI | GCNGC | 2 cut(s) | 222, 560 |
| BlsI | GCNGC | 2 cut(s) | 223, 561 |
| Bme1390I | CCNGG | 1 cut(s) | 257 |
| BmgT120I | GGNCC | 1 cut(s) | 195 |
| BmiI | GGNNCC | 3 cut(s) | 9, 415, 485 |
| BmrFI | CCNGG | 1 cut(s) | 257 |
| BmsI | GCATC | 1 cut(s) | 457 |
| BoxI | GACNNNNGTC | 1 cut(s) | 464 |
| BpuMI | CCSGG | 1 cut(s) | 257 |
| BsaHI | GRCGYC | 1 cut(s) | 414 |
| BsaJI | CCNNGG | 3 cut(s) | 191, 232, 538 |
| BsaWI | WCCGGW | 1 cut(s) | 340 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 208, 238 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 139, 233, 347 |
| Bse118I | RCCGGY | 3 cut(s) | 4, 124, 340 |
| BseDI | CCNNGG | 3 cut(s) | 191, 232, 538 |
| BseGI | GGATG | 2 cut(s) | 448, 533 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 139, 233, 347 |
| BseRI | GAGGAG | 1 cut(s) | 86 |
| BseX3I | CGGCCG | 1 cut(s) | 557 |
| BseXI | GCAGC | 1 cut(s) | 233 |
| Bsh1236I | CGCG | 4 cut(s) | 209, 527, 540, 562 |
| Bsh1285I | CGRYCG | 3 cut(s) | 24, 207, 560 |
| BshFI | GGCC | 7 cut(s) | 128, 161, 196, 380, 440, 475, 559 |
| BshNI | GGYRCC | 2 cut(s) | 7, 413 |
| BshTI | ACCGGT | 1 cut(s) | 340 |
| BsiEI | CGRYCG | 3 cut(s) | 24, 207, 560 |
| BsiHKAI | GWGCWC | 2 cut(s) | 80, 216 |
| BsiSI | CCGG | 4 cut(s) | 5, 125, 256, 341 |
| BsiWI | CGTACG | 1 cut(s) | 432 |
| BslFI | GGGAC | 1 cut(s) | 19 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 139, 233, 347 |
| BsmAI | GTCTC | 2 cut(s) | 452, 472 |
| BsmFI | GGGAC | 1 cut(s) | 19 |
| BsnI | GGCC | 7 cut(s) | 128, 161, 196, 380, 440, 475, 559 |
| Bsp1286I | GDGCHC | 3 cut(s) | 80, 216, 395 |
| Bsp143I | GATC | 1 cut(s) | 483 |
| Bsp19I | CCATGG | 1 cut(s) | 191 |
| Bsp68I | TCGCGA | 1 cut(s) | 527 |
| BspACI | CCGC | 7 cut(s) | 20, 209, 253, 276, 538, 540, 560 |
| BspANI | GGCC | 7 cut(s) | 128, 161, 196, 380, 440, 475, 559 |
| BspFNI | CGCG | 4 cut(s) | 209, 527, 540, 562 |
| BspLI | GGNNCC | 3 cut(s) | 9, 415, 485 |
| BspPI | GGATC | 2 cut(s) | 478, 491 |
| BspT107I | GGYRCC | 2 cut(s) | 7, 413 |
| BsrFI | RCCGGY | 3 cut(s) | 4, 124, 340 |
| BssAI | RCCGGY | 3 cut(s) | 4, 124, 340 |
| BssECI | CCNNGG | 3 cut(s) | 191, 232, 538 |
| BssMI | GATC | 1 cut(s) | 483 |
| BssNI | GRCGYC | 1 cut(s) | 414 |
| BssT1I | CCWWGG | 1 cut(s) | 191 |
| Bst4CI | ACNGT | 4 cut(s) | 12, 205, 236, 385 |
| Bst6I | CTCTTC | 1 cut(s) | 359 |
| BstACI | GRCGYC | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 145, 542 |
| BstDEI | CTNAG | 1 cut(s) | 289 |
| BstDSI | CCRYGG | 3 cut(s) | 191, 232, 538 |
| BstF5I | GGATG | 2 cut(s) | 448, 533 |
| BstFNI | CGCG | 4 cut(s) | 209, 527, 540, 562 |
| BstH2I | RGCGCY | 1 cut(s) | 417 |
| BstHHI | GCGC | 1 cut(s) | 416 |
| BstKTI | GATC | 1 cut(s) | 486 |
| BstMAI | GTCTC | 2 cut(s) | 452, 472 |
| BstMBI | GATC | 1 cut(s) | 483 |
| BstMCI | CGRYCG | 3 cut(s) | 24, 207, 560 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 153 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 464 |
| BstSCI | CCNGG | 1 cut(s) | 255 |
| BstUI | CGCG | 4 cut(s) | 209, 527, 540, 562 |
| BstV1I | GCAGC | 1 cut(s) | 233 |
| BstX2I | RGATCY | 1 cut(s) | 483 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 483 |
| BstZI | CGGCCG | 1 cut(s) | 557 |
| BsuRI | GGCC | 7 cut(s) | 128, 161, 196, 380, 440, 475, 559 |
| BtgI | CCRYGG | 3 cut(s) | 191, 232, 538 |
| BtgZI | GCGATG | 2 cut(s) | 508, 542 |
| BtsCI | GGATG | 2 cut(s) | 448, 533 |
| BtuMI | TCGCGA | 1 cut(s) | 527 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 145, 542 |
| CfoI | GCGC | 1 cut(s) | 416 |
| Cfr10I | RCCGGY | 3 cut(s) | 4, 124, 340 |
| Cfr13I | GGNCC | 1 cut(s) | 195 |
| Cfr42I | CCGCGG | 1 cut(s) | 541 |
| Csp6I | GTAC | 2 cut(s) | 320, 433 |
| CspAI | ACCGGT | 1 cut(s) | 340 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 45, 80 |
| CviAII | CATG | 2 cut(s) | 157, 192 |
| CviQI | GTAC | 2 cut(s) | 320, 433 |
| DdeI | CTNAG | 1 cut(s) | 289 |
| DinI | GGCGCC | 1 cut(s) | 415 |
| DpnI | GATC | 1 cut(s) | 485 |
| DpnII | GATC | 1 cut(s) | 483 |
| EaeI | YGGCCR | 3 cut(s) | 159, 378, 557 |
| EagI | CGGCCG | 1 cut(s) | 557 |
| Eam1104I | CTCTTC | 1 cut(s) | 359 |
| EarI | CTCTTC | 1 cut(s) | 359 |
| EclXI | CGGCCG | 1 cut(s) | 557 |
| Eco130I | CCWWGG | 1 cut(s) | 191 |
| Eco24I | GRGCYC | 1 cut(s) | 395 |
| Eco52I | CGGCCG | 1 cut(s) | 557 |
| EcoT14I | CCWWGG | 1 cut(s) | 191 |
| EcoT22I | ATGCAT | 1 cut(s) | 450 |
| EcoT38I | GRGCYC | 1 cut(s) | 395 |
| EgeI | GGCGCC | 1 cut(s) | 415 |
| EheI | GGCGCC | 1 cut(s) | 415 |
| ErhI | CCWWGG | 1 cut(s) | 191 |
| FaeI | CATG | 2 cut(s) | 160, 195 |
| FaiI | YATR | 6 cut(s) | 158, 193, 264, 422, 446, 516 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 86, 118, 298, 330 |
| FaqI | GGGAC | 1 cut(s) | 19 |
| FatI | CATG | 2 cut(s) | 156, 191 |
| FauI | CCCGC | 2 cut(s) | 533, 545 |
| Fnu4HI | GCNGC | 2 cut(s) | 222, 560 |
| FokI | GGATG | 2 cut(s) | 435, 520 |
| FriOI | GRGCYC | 1 cut(s) | 395 |
| Fsp4HI | GCNGC | 2 cut(s) | 222, 560 |
| FspBI | CTAG | 2 cut(s) | 273, 462 |
| GlaI | GCGC | 1 cut(s) | 415 |
| GluI | GCNGC | 2 cut(s) | 222, 560 |
| HaeII | RGCGCY | 1 cut(s) | 417 |
| HaeIII | GGCC | 7 cut(s) | 128, 161, 196, 380, 440, 475, 559 |
| HapII | CCGG | 4 cut(s) | 5, 125, 256, 341 |
| HhaI | GCGC | 1 cut(s) | 416 |
| Hin1I | GRCGYC | 1 cut(s) | 414 |
| Hin1II | CATG | 2 cut(s) | 160, 195 |
| Hin6I | GCGC | 1 cut(s) | 414 |
| HinP1I | GCGC | 1 cut(s) | 414 |
| HinfI | GANTC | 4 cut(s) | 32, 169, 351, 498 |
| HpaII | CCGG | 4 cut(s) | 5, 125, 256, 341 |
| HphI | GGTGA | 3 cut(s) | 108, 114, 174 |
| Hpy166II | GTNNAC | 1 cut(s) | 67 |
| Hpy188I | TCNGA | 3 cut(s) | 108, 397, 497 |
| Hpy188III | TCNNGA | 2 cut(s) | 457, 526 |
| Hpy8I | GTNNAC | 1 cut(s) | 67 |
| Hpy99I | CGWCG | 2 cut(s) | 16, 29 |
| HpyCH4III | ACNGT | 4 cut(s) | 12, 205, 236, 385 |
| HpyCH4V | TGCA | 2 cut(s) | 156, 448 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 153 |
| HpyF3I | CTNAG | 1 cut(s) | 289 |
| Hsp92I | GRCGYC | 1 cut(s) | 414 |
| Hsp92II | CATG | 2 cut(s) | 160, 195 |
| HspAI | GCGC | 1 cut(s) | 414 |
| KasI | GGCGCC | 1 cut(s) | 413 |
| KroI | GCCGGC | 1 cut(s) | 4 |
| KroNI | GCCGGC | 1 cut(s) | 6 |
| KspI | CCGCGG | 1 cut(s) | 541 |
| Kzo9I | GATC | 1 cut(s) | 483 |
| LmnI | GCTCC | 2 cut(s) | 229, 259 |
| LpnPI | CCDG | 5 cut(s) | 18, 56, 138, 269, 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 233 |
| LweI | GCATC | 1 cut(s) | 457 |
| MaeI | CTAG | 2 cut(s) | 273, 462 |
| MalI | GATC | 1 cut(s) | 485 |
| MboI | GATC | 1 cut(s) | 483 |
| MboII | GAAGA | 3 cut(s) | 42, 45, 346 |
| MflI | RGATCY | 1 cut(s) | 483 |
| MhlI | GDGCHC | 3 cut(s) | 80, 216, 395 |
| MlsI | TGGCCA | 1 cut(s) | 161 |
| MluCI | AATT | 2 cut(s) | 163, 279 |
| MluNI | TGGCCA | 1 cut(s) | 161 |
| Mly113I | GGCGCC | 1 cut(s) | 414 |
| MlyI | GAGTC | 3 cut(s) | 41, 163, 345 |
| MnlI | CCTC | 6 cut(s) | 64, 195, 336, 378, 427, 430 |
| Mox20I | TGGCCA | 1 cut(s) | 161 |
| Mph1103I | ATGCAT | 1 cut(s) | 450 |
| MroNI | GCCGGC | 1 cut(s) | 4 |
| MscI | TGGCCA | 1 cut(s) | 161 |
| MslI | CAYNNNNRTG | 1 cut(s) | 527 |
| Msp20I | TGGCCA | 1 cut(s) | 161 |
| MspA1I | CMGCKG | 1 cut(s) | 540 |
| MspI | CCGG | 4 cut(s) | 5, 125, 256, 341 |
| MspR9I | CCNGG | 1 cut(s) | 257 |
| MvnI | CGCG | 4 cut(s) | 209, 527, 540, 562 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 153 |
| NaeI | GCCGGC | 1 cut(s) | 6 |
| NarI | GGCGCC | 1 cut(s) | 414 |
| NciI | CCSGG | 1 cut(s) | 257 |
| NcoI | CCATGG | 1 cut(s) | 191 |
| NdeII | GATC | 1 cut(s) | 483 |
| NgoMIV | GCCGGC | 1 cut(s) | 4 |
| NlaIII | CATG | 2 cut(s) | 160, 195 |
| NlaIV | GGNNCC | 3 cut(s) | 9, 415, 485 |
| NmeAIII | GCCGAG | 2 cut(s) | 451, 535 |
| NruI | TCGCGA | 1 cut(s) | 527 |
| NsiI | ATGCAT | 1 cut(s) | 450 |
| PdiI | GCCGGC | 1 cut(s) | 6 |
| PfeI | GAWTC | 1 cut(s) | 498 |
| Pfl23II | CGTACG | 1 cut(s) | 432 |
| PinAI | ACCGGT | 1 cut(s) | 340 |
| PkrI | GCNGC | 2 cut(s) | 223, 561 |
| PleI | GAGTC | 3 cut(s) | 40, 163, 345 |
| PluTI | GGCGCC | 1 cut(s) | 417 |
| PpsI | GAGTC | 3 cut(s) | 40, 163, 345 |
| PshAI | GACNNNNGTC | 1 cut(s) | 464 |
| PspLI | CGTACG | 1 cut(s) | 432 |
| PspN4I | GGNNCC | 3 cut(s) | 9, 415, 485 |
| PspPI | GGNCC | 1 cut(s) | 195 |
| PsuI | RGATCY | 1 cut(s) | 483 |
| RruI | TCGCGA | 1 cut(s) | 527 |
| RsaI | GTAC | 2 cut(s) | 321, 434 |
| RsaNI | GTAC | 2 cut(s) | 320, 433 |
| RseI | CAYNNNNRTG | 1 cut(s) | 527 |
| SacII | CCGCGG | 1 cut(s) | 541 |
| SatI | GCNGC | 2 cut(s) | 222, 560 |
| Sau3AI | GATC | 1 cut(s) | 483 |
| Sau96I | GGNCC | 1 cut(s) | 195 |
| SchI | GAGTC | 3 cut(s) | 41, 163, 345 |
| ScrFI | CCNGG | 1 cut(s) | 257 |
| SduI | GDGCHC | 3 cut(s) | 80, 216, 395 |
| SetI | ASST | 3 cut(s) | 45, 187, 226 |
| SfaNI | GCATC | 1 cut(s) | 457 |
| SfoI | GGCGCC | 1 cut(s) | 415 |
| Sfr303I | CCGCGG | 1 cut(s) | 541 |
| SgrAI | CRCCGGYG | 1 cut(s) | 340 |
| SgrBI | CCGCGG | 1 cut(s) | 541 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 527 |
| SpeI | ACTAGT | 1 cut(s) | 461 |
| Sse9I | AATT | 2 cut(s) | 163, 279 |
| SsiI | CCGC | 7 cut(s) | 20, 209, 253, 276, 538, 540, 560 |
| SspDI | GGCGCC | 1 cut(s) | 413 |
| SspMI | CTAG | 2 cut(s) | 273, 462 |
| StyD4I | CCNGG | 1 cut(s) | 255 |
| StyI | CCWWGG | 1 cut(s) | 191 |
| TaaI | ACNGT | 4 cut(s) | 12, 205, 236, 385 |
| TaqI | TCGA | 2 cut(s) | 167, 456 |
| TasI | AATT | 2 cut(s) | 163, 279 |
| TatI | WGTACW | 1 cut(s) | 319 |
| TauI | GCSGC | 1 cut(s) | 562 |
| TfiI | GAWTC | 1 cut(s) | 498 |
| TseI | GCWGC | 1 cut(s) | 221 |
| TspDTI | ATGAA | 1 cut(s) | 300 |
| XspI | CTAG | 2 cut(s) | 273, 462 |
| Zsp2I | ATGCAT | 1 cut(s) | 450 |