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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 319 |
| Acc36I | ACCTGC | 1 cut(s) | 319 |
| AccB1I | GGYRCC | 1 cut(s) | 173 |
| AccII | CGCG | 3 cut(s) | 147, 288, 479 |
| AciI | CCGC | 5 cut(s) | 13, 184, 283, 286, 418 |
| AclWI | GGATC | 2 cut(s) | 238, 251 |
| AcoI | YGGCCR | 1 cut(s) | 139 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 170, 376 |
| AgsI | TTSAA | 2 cut(s) | 263, 359 |
| AhlI | ACTAGT | 1 cut(s) | 517 |
| AjnI | CCWGG | 1 cut(s) | 246 |
| AluBI | AGCT | 1 cut(s) | 472 |
| AluI | AGCT | 1 cut(s) | 472 |
| Alw26I | GTCTC | 1 cut(s) | 212 |
| AlwI | GGATC | 2 cut(s) | 238, 251 |
| Ama87I | CYCGRG | 1 cut(s) | 374 |
| AoxI | GGCC | 5 cut(s) | 3, 126, 139, 232, 505 |
| ApeKI | GCWGC | 1 cut(s) | 449 |
| AspLEI | GCGC | 1 cut(s) | 481 |
| AspS9I | GGNCC | 3 cut(s) | 104, 127, 233 |
| AsuC2I | CCSGG | 2 cut(s) | 375, 376 |
| AvaI | CYCGRG | 1 cut(s) | 374 |
| AvaII | GGWCC | 1 cut(s) | 104 |
| BaeGI | GKGCMC | 1 cut(s) | 178 |
| BamHI | GGATCC | 1 cut(s) | 243 |
| BanI | GGYRCC | 1 cut(s) | 173 |
| BanII | GRGCYC | 1 cut(s) | 382 |
| BbvI | GCAGC | 1 cut(s) | 436 |
| BceAI | ACGGC | 3 cut(s) | 126, 141, 154 |
| BciT130I | CCWGG | 1 cut(s) | 248 |
| BcnI | CCSGG | 2 cut(s) | 375, 376 |
| BcoDI | GTCTC | 1 cut(s) | 212 |
| BcuI | ACTAGT | 1 cut(s) | 517 |
| BfaI | CTAG | 2 cut(s) | 222, 518 |
| BfmI | CTRYAG | 1 cut(s) | 388 |
| BfuAI | ACCTGC | 1 cut(s) | 319 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 504 |
| BisI | GCNGC | 3 cut(s) | 286, 418, 450 |
| BlsI | GCNGC | 3 cut(s) | 287, 419, 451 |
| BmcAI | AGTACT | 1 cut(s) | 56 |
| Bme1390I | CCNGG | 3 cut(s) | 248, 375, 376 |
| Bme18I | GGWCC | 1 cut(s) | 104 |
| BmeT110I | CYCGRG | 1 cut(s) | 374 |
| BmgT120I | GGNCC | 3 cut(s) | 104, 127, 233 |
| BmiI | GGNNCC | 4 cut(s) | 175, 245, 368, 381 |
| BmrFI | CCNGG | 3 cut(s) | 248, 375, 376 |
| BmsI | GCATC | 3 cut(s) | 217, 234, 529 |
| BpmI | CTGGAG | 1 cut(s) | 71 |
| BpuMI | CCSGG | 2 cut(s) | 375, 376 |
| BsaJI | CCNNGG | 3 cut(s) | 107, 374, 375 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 170, 376 |
| Bse1I | ACTGG | 3 cut(s) | 62, 106, 164 |
| BseBI | CCWGG | 1 cut(s) | 248 |
| BseDI | CCNNGG | 3 cut(s) | 107, 374, 375 |
| BseGI | GGATG | 2 cut(s) | 208, 510 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 170, 376 |
| BseNI | ACTGG | 3 cut(s) | 62, 106, 164 |
| BseRI | GAGGAG | 1 cut(s) | 342 |
| BseSI | GKGCMC | 1 cut(s) | 178 |
| BseX3I | CGGCCG | 1 cut(s) | 139 |
| BseXI | GCAGC | 1 cut(s) | 436 |
| BsgI | GTGCAG | 1 cut(s) | 64 |
| Bsh1236I | CGCG | 3 cut(s) | 147, 288, 479 |
| Bsh1285I | CGRYCG | 1 cut(s) | 142 |
| BshFI | GGCC | 5 cut(s) | 5, 128, 141, 234, 507 |
| BshNI | GGYRCC | 1 cut(s) | 173 |
| BsiEI | CGRYCG | 1 cut(s) | 142 |
| BsiHKCI | CYCGRG | 1 cut(s) | 374 |
| BsiSI | CCGG | 1 cut(s) | 375 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 170, 376 |
| BsmAI | GTCTC | 1 cut(s) | 212 |
| BsnI | GGCC | 5 cut(s) | 5, 128, 141, 234, 507 |
| BsoBI | CYCGRG | 1 cut(s) | 374 |
| Bsp1286I | GDGCHC | 2 cut(s) | 178, 382 |
| Bsp143I | GATC | 1 cut(s) | 243 |
| BspACI | CCGC | 5 cut(s) | 13, 184, 283, 286, 418 |
| BspANI | GGCC | 5 cut(s) | 5, 128, 141, 234, 507 |
| BspFNI | CGCG | 3 cut(s) | 147, 288, 479 |
| BspLI | GGNNCC | 4 cut(s) | 175, 245, 368, 381 |
| BspMI | ACCTGC | 1 cut(s) | 319 |
| BspPI | GGATC | 2 cut(s) | 238, 251 |
| BspT107I | GGYRCC | 1 cut(s) | 173 |
| BsrI | ACTGG | 3 cut(s) | 62, 106, 164 |
| BssECI | CCNNGG | 3 cut(s) | 107, 374, 375 |
| BssMI | GATC | 1 cut(s) | 243 |
| BssT1I | CCWWGG | 1 cut(s) | 107 |
| Bst2UI | CCWGG | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 1 cut(s) | 392 |
| BstC8I | GCNNGC | 3 cut(s) | 403, 447, 496 |
| BstDEI | CTNAG | 1 cut(s) | 461 |
| BstF5I | GGATG | 2 cut(s) | 208, 510 |
| BstFNI | CGCG | 3 cut(s) | 147, 288, 479 |
| BstHHI | GCGC | 1 cut(s) | 481 |
| BstKTI | GATC | 1 cut(s) | 246 |
| BstMAI | GTCTC | 1 cut(s) | 212 |
| BstMBI | GATC | 1 cut(s) | 243 |
| BstMCI | CGRYCG | 1 cut(s) | 142 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 231, 407, 478, 504 |
| BstNI | CCWGG | 1 cut(s) | 248 |
| BstSCI | CCNGG | 3 cut(s) | 246, 373, 374 |
| BstSFI | CTRYAG | 1 cut(s) | 388 |
| BstSLI | GKGCMC | 1 cut(s) | 178 |
| BstUI | CGCG | 3 cut(s) | 147, 288, 479 |
| BstV1I | GCAGC | 1 cut(s) | 436 |
| BstX2I | RGATCY | 1 cut(s) | 243 |
| BstYI | RGATCY | 1 cut(s) | 243 |
| BstZI | CGGCCG | 1 cut(s) | 139 |
| BsuRI | GGCC | 5 cut(s) | 5, 128, 141, 234, 507 |
| BtsCI | GGATG | 2 cut(s) | 208, 510 |
| BtsI | GCAGTG | 1 cut(s) | 299 |
| BtsIMutI | CAGTG | 4 cut(s) | 99, 171, 299, 397 |
| BveI | ACCTGC | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 3 cut(s) | 403, 447, 496 |
| CfoI | GCGC | 1 cut(s) | 481 |
| Cfr13I | GGNCC | 3 cut(s) | 104, 127, 233 |
| Cfr9I | CCCGGG | 1 cut(s) | 374 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 2 cut(s) | 197, 205 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 1 cut(s) | 461 |
| DpnI | GATC | 1 cut(s) | 245 |
| DpnII | GATC | 1 cut(s) | 243 |
| EaeI | YGGCCR | 1 cut(s) | 139 |
| EagI | CGGCCG | 1 cut(s) | 139 |
| EciI | GGCGGA | 1 cut(s) | 272 |
| EclXI | CGGCCG | 1 cut(s) | 139 |
| Eco130I | CCWWGG | 1 cut(s) | 107 |
| Eco24I | GRGCYC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 1 cut(s) | 104 |
| Eco52I | CGGCCG | 1 cut(s) | 139 |
| Eco88I | CYCGRG | 1 cut(s) | 374 |
| EcoRII | CCWGG | 1 cut(s) | 246 |
| EcoT14I | CCWWGG | 1 cut(s) | 107 |
| EcoT22I | ATGCAT | 1 cut(s) | 210 |
| EcoT38I | GRGCYC | 1 cut(s) | 382 |
| ErhI | CCWWGG | 1 cut(s) | 107 |
| FaeI | CATG | 2 cut(s) | 200, 208 |
| FaiI | YATR | 7 cut(s) | 135, 193, 198, 206, 277, 468, 537 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 59, 91 |
| FatI | CATG | 2 cut(s) | 196, 204 |
| Fnu4HI | GCNGC | 3 cut(s) | 286, 418, 450 |
| FokI | GGATG | 2 cut(s) | 195, 497 |
| FriOI | GRGCYC | 1 cut(s) | 382 |
| Fsp4HI | GCNGC | 3 cut(s) | 286, 418, 450 |
| FspBI | CTAG | 2 cut(s) | 222, 518 |
| GlaI | GCGC | 1 cut(s) | 480 |
| GluI | GCNGC | 3 cut(s) | 286, 418, 450 |
| GsuI | CTGGAG | 1 cut(s) | 71 |
| HaeIII | GGCC | 5 cut(s) | 5, 128, 141, 234, 507 |
| HapII | CCGG | 1 cut(s) | 375 |
| HhaI | GCGC | 1 cut(s) | 481 |
| Hin1II | CATG | 2 cut(s) | 200, 208 |
| Hin6I | GCGC | 1 cut(s) | 479 |
| HinP1I | GCGC | 1 cut(s) | 479 |
| HinfI | GANTC | 3 cut(s) | 153, 259, 342 |
| HpaII | CCGG | 1 cut(s) | 375 |
| Hpy188I | TCNGA | 2 cut(s) | 158, 436 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 356, 383 |
| Hpy99I | CGWCG | 2 cut(s) | 147, 293 |
| HpyAV | CCTTC | 1 cut(s) | 380 |
| HpyCH4III | ACNGT | 1 cut(s) | 392 |
| HpyCH4V | TGCA | 4 cut(s) | 66, 81, 208, 401 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 231, 407, 478, 504 |
| HpyF3I | CTNAG | 1 cut(s) | 461 |
| Hsp92II | CATG | 2 cut(s) | 200, 208 |
| HspAI | GCGC | 1 cut(s) | 479 |
| Kzo9I | GATC | 1 cut(s) | 243 |
| LmnI | GCTCC | 1 cut(s) | 385 |
| Lsp1109I | GCAGC | 1 cut(s) | 436 |
| LweI | GCATC | 3 cut(s) | 217, 234, 529 |
| MaeI | CTAG | 2 cut(s) | 222, 518 |
| MalI | GATC | 1 cut(s) | 245 |
| MboI | GATC | 1 cut(s) | 243 |
| MboII | GAAGA | 2 cut(s) | 67, 351 |
| MflI | RGATCY | 1 cut(s) | 243 |
| MhlI | GDGCHC | 2 cut(s) | 178, 382 |
| MluCI | AATT | 2 cut(s) | 39, 500 |
| MlyI | GAGTC | 1 cut(s) | 147 |
| MmeI | TCCRAC | 1 cut(s) | 538 |
| MnlI | CCTC | 7 cut(s) | 94, 140, 188, 360, 363, 518, 542 |
| Mph1103I | ATGCAT | 1 cut(s) | 210 |
| MspI | CCGG | 1 cut(s) | 375 |
| MspR9I | CCNGG | 3 cut(s) | 248, 375, 376 |
| MvaI | CCWGG | 1 cut(s) | 248 |
| MvnI | CGCG | 3 cut(s) | 147, 288, 479 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 231, 407, 478, 504 |
| NciI | CCSGG | 2 cut(s) | 375, 376 |
| NdeII | GATC | 1 cut(s) | 243 |
| NlaIII | CATG | 2 cut(s) | 200, 208 |
| NlaIV | GGNNCC | 4 cut(s) | 175, 245, 368, 381 |
| NsiI | ATGCAT | 1 cut(s) | 210 |
| PaqCI | CACCTGC | 1 cut(s) | 319 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 144 |
| PfeI | GAWTC | 2 cut(s) | 259, 342 |
| PfoI | TCCNGGA | 1 cut(s) | 246 |
| PkrI | GCNGC | 3 cut(s) | 287, 419, 451 |
| PleI | GAGTC | 1 cut(s) | 147 |
| PpsI | GAGTC | 1 cut(s) | 147 |
| Psp6I | CCWGG | 1 cut(s) | 246 |
| PspGI | CCWGG | 1 cut(s) | 246 |
| PspN4I | GGNNCC | 4 cut(s) | 175, 245, 368, 381 |
| PspPI | GGNCC | 3 cut(s) | 104, 127, 233 |
| PsuI | RGATCY | 1 cut(s) | 243 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SatI | GCNGC | 3 cut(s) | 286, 418, 450 |
| Sau3AI | GATC | 1 cut(s) | 243 |
| Sau96I | GGNCC | 3 cut(s) | 104, 127, 233 |
| ScaI | AGTACT | 1 cut(s) | 56 |
| SchI | GAGTC | 1 cut(s) | 147 |
| ScrFI | CCNGG | 3 cut(s) | 248, 375, 376 |
| SduI | GDGCHC | 2 cut(s) | 178, 382 |
| SetI | ASST | 5 cut(s) | 37, 86, 313, 352, 474 |
| SfaNI | GCATC | 3 cut(s) | 217, 234, 529 |
| SfcI | CTRYAG | 1 cut(s) | 388 |
| SinI | GGWCC | 1 cut(s) | 104 |
| SmaI | CCCGGG | 1 cut(s) | 376 |
| SpeI | ACTAGT | 1 cut(s) | 517 |
| Sse9I | AATT | 2 cut(s) | 39, 500 |
| SsiI | CCGC | 5 cut(s) | 13, 184, 283, 286, 418 |
| SspMI | CTAG | 2 cut(s) | 222, 518 |
| StyD4I | CCNGG | 3 cut(s) | 246, 373, 374 |
| StyI | CCWWGG | 1 cut(s) | 107 |
| TaaI | ACNGT | 1 cut(s) | 392 |
| TasI | AATT | 2 cut(s) | 39, 500 |
| TatI | WGTACW | 1 cut(s) | 54 |
| TauI | GCSGC | 2 cut(s) | 288, 420 |
| TfiI | GAWTC | 2 cut(s) | 259, 342 |
| TscAI | CASTG | 4 cut(s) | 106, 171, 306, 397 |
| TseI | GCWGC | 1 cut(s) | 449 |
| TspDTI | ATGAA | 2 cut(s) | 61, 471 |
| TspMI | CCCGGG | 1 cut(s) | 374 |
| TspRI | CASTG | 4 cut(s) | 106, 171, 306, 397 |
| VpaK11BI | GGWCC | 1 cut(s) | 104 |
| XmaI | CCCGGG | 1 cut(s) | 374 |
| XspI | CTAG | 2 cut(s) | 222, 518 |
| ZrmI | AGTACT | 1 cut(s) | 56 |
| Zsp2I | ATGCAT | 1 cut(s) | 210 |