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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 69, 155 |
| AciI | CCGC | 4 cut(s) | 67, 149, 153, 385 |
| AclWI | GGATC | 1 cut(s) | 129 |
| AcoI | YGGCCR | 1 cut(s) | 150 |
| AcuI | CTGAAG | 2 cut(s) | 38, 194 |
| AfaI | GTAC | 1 cut(s) | 60 |
| AgsI | TTSAA | 1 cut(s) | 203 |
| AjnI | CCWGG | 3 cut(s) | 309, 318, 366 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 366, 398 |
| AluBI | AGCT | 2 cut(s) | 41, 344 |
| AluI | AGCT | 2 cut(s) | 41, 344 |
| Alw26I | GTCTC | 1 cut(s) | 300 |
| AlwI | GGATC | 1 cut(s) | 129 |
| Ama87I | CYCGRG | 1 cut(s) | 34 |
| AoxI | GGCC | 4 cut(s) | 150, 306, 324, 400 |
| ApeKI | GCWGC | 3 cut(s) | 115, 344, 347 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 148, 180 |
| AspLEI | GCGC | 1 cut(s) | 31 |
| AspS9I | GGNCC | 4 cut(s) | 5, 192, 307, 325 |
| AvaI | CYCGRG | 1 cut(s) | 34 |
| AvaII | GGWCC | 2 cut(s) | 5, 192 |
| BbvI | GCAGC | 3 cut(s) | 102, 331, 334 |
| BccI | CCATC | 2 cut(s) | 86, 192 |
| BceAI | ACGGC | 1 cut(s) | 249 |
| BciT130I | CCWGG | 3 cut(s) | 311, 320, 368 |
| BcoDI | GTCTC | 1 cut(s) | 300 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BfmI | CTRYAG | 2 cut(s) | 116, 348 |
| BglII | AGATCT | 1 cut(s) | 205 |
| BisI | GCNGC | 5 cut(s) | 116, 150, 153, 345, 348 |
| BlsI | GCNGC | 5 cut(s) | 117, 151, 154, 346, 349 |
| Bme1390I | CCNGG | 3 cut(s) | 311, 320, 368 |
| Bme18I | GGWCC | 2 cut(s) | 5, 192 |
| BmeT110I | CYCGRG | 1 cut(s) | 34 |
| BmgT120I | GGNCC | 4 cut(s) | 5, 192, 307, 325 |
| BmiI | GGNNCC | 4 cut(s) | 6, 7, 182, 194 |
| BmrFI | CCNGG | 3 cut(s) | 311, 320, 368 |
| BmrI | ACTGGG | 1 cut(s) | 85 |
| BmuI | ACTGGG | 1 cut(s) | 85 |
| BpmI | CTGGAG | 2 cut(s) | 284, 341 |
| Bpu10I | CCTNAGC | 1 cut(s) | 274 |
| BpuEI | CTTGAG | 2 cut(s) | 282, 324 |
| Bsa29I | ATCGAT | 1 cut(s) | 105 |
| BsaJI | CCNNGG | 3 cut(s) | 159, 309, 403 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 366, 396 |
| Bse1I | ACTGG | 3 cut(s) | 91, 267, 309 |
| BseBI | CCWGG | 3 cut(s) | 311, 320, 368 |
| BseCI | ATCGAT | 1 cut(s) | 105 |
| BseDI | CCNNGG | 3 cut(s) | 159, 309, 403 |
| BseGI | GGATG | 1 cut(s) | 376 |
| BseMII | CTCAG | 2 cut(s) | 44, 202 |
| BseNI | ACTGG | 3 cut(s) | 91, 267, 309 |
| BseX3I | CGGCCG | 1 cut(s) | 150 |
| BseXI | GCAGC | 3 cut(s) | 102, 331, 334 |
| Bsh1236I | CGCG | 2 cut(s) | 69, 155 |
| Bsh1285I | CGRYCG | 1 cut(s) | 153 |
| BshFI | GGCC | 4 cut(s) | 152, 308, 326, 402 |
| BshVI | ATCGAT | 1 cut(s) | 105 |
| BsiEI | CGRYCG | 1 cut(s) | 153 |
| BsiHKCI | CYCGRG | 1 cut(s) | 34 |
| BslFI | GGGAC | 1 cut(s) | 18 |
| BsmAI | GTCTC | 1 cut(s) | 300 |
| BsmFI | GGGAC | 1 cut(s) | 18 |
| BsnI | GGCC | 4 cut(s) | 152, 308, 326, 402 |
| BsoBI | CYCGRG | 1 cut(s) | 34 |
| Bsp143I | GATC | 3 cut(s) | 106, 121, 205 |
| BspACI | CCGC | 4 cut(s) | 67, 149, 153, 385 |
| BspANI | GGCC | 4 cut(s) | 152, 308, 326, 402 |
| BspCNI | CTCAG | 2 cut(s) | 45, 201 |
| BspDI | ATCGAT | 1 cut(s) | 105 |
| BspFNI | CGCG | 2 cut(s) | 69, 155 |
| BspLI | GGNNCC | 4 cut(s) | 6, 7, 182, 194 |
| BspMAI | CTGCAG | 2 cut(s) | 120, 352 |
| BspPI | GGATC | 1 cut(s) | 129 |
| BsrI | ACTGG | 3 cut(s) | 91, 267, 309 |
| BssECI | CCNNGG | 3 cut(s) | 159, 309, 403 |
| BssMI | GATC | 3 cut(s) | 106, 121, 205 |
| Bst2UI | CCWGG | 3 cut(s) | 311, 320, 368 |
| BstC8I | GCNNGC | 3 cut(s) | 243, 316, 400 |
| BstDEI | CTNAG | 3 cut(s) | 53, 188, 274 |
| BstDSI | CCRYGG | 1 cut(s) | 159 |
| BstF5I | GGATG | 1 cut(s) | 376 |
| BstFNI | CGCG | 2 cut(s) | 69, 155 |
| BstHHI | GCGC | 1 cut(s) | 31 |
| BstKTI | GATC | 3 cut(s) | 109, 124, 208 |
| BstMAI | GTCTC | 1 cut(s) | 300 |
| BstMBI | GATC | 3 cut(s) | 106, 121, 205 |
| BstMCI | CGRYCG | 1 cut(s) | 153 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 28, 233, 242, 332, 341 |
| BstNI | CCWGG | 3 cut(s) | 311, 320, 368 |
| BstSCI | CCNGG | 3 cut(s) | 309, 318, 366 |
| BstSFI | CTRYAG | 2 cut(s) | 116, 348 |
| BstUI | CGCG | 2 cut(s) | 69, 155 |
| BstV1I | GCAGC | 3 cut(s) | 102, 331, 334 |
| BstX2I | RGATCY | 2 cut(s) | 121, 205 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 166 |
| BstYI | RGATCY | 2 cut(s) | 121, 205 |
| BstZI | CGGCCG | 1 cut(s) | 150 |
| Bsu15I | ATCGAT | 1 cut(s) | 105 |
| BsuRI | GGCC | 4 cut(s) | 152, 308, 326, 402 |
| BsuTUI | ATCGAT | 1 cut(s) | 105 |
| BtgI | CCRYGG | 1 cut(s) | 159 |
| BtsCI | GGATG | 1 cut(s) | 376 |
| Cac8I | GCNNGC | 3 cut(s) | 243, 316, 400 |
| CciNI | GCGGCCGC | 1 cut(s) | 150 |
| CfoI | GCGC | 1 cut(s) | 31 |
| Cfr13I | GGNCC | 4 cut(s) | 5, 192, 307, 325 |
| ClaI | ATCGAT | 1 cut(s) | 105 |
| Csp6I | GTAC | 1 cut(s) | 59 |
| CviAII | CATG | 1 cut(s) | 248 |
| CviQI | GTAC | 1 cut(s) | 59 |
| DdeI | CTNAG | 3 cut(s) | 53, 188, 274 |
| DpnI | GATC | 3 cut(s) | 108, 123, 207 |
| DpnII | GATC | 3 cut(s) | 106, 121, 205 |
| EaeI | YGGCCR | 1 cut(s) | 150 |
| EagI | CGGCCG | 1 cut(s) | 150 |
| EciI | GGCGGA | 1 cut(s) | 374 |
| EclXI | CGGCCG | 1 cut(s) | 150 |
| Eco47I | GGWCC | 2 cut(s) | 5, 192 |
| Eco52I | CGGCCG | 1 cut(s) | 150 |
| Eco57I | CTGAAG | 2 cut(s) | 38, 194 |
| Eco88I | CYCGRG | 1 cut(s) | 34 |
| EcoO109I | RGGNCCY | 2 cut(s) | 5, 192 |
| EcoRII | CCWGG | 3 cut(s) | 309, 318, 366 |
| FaeI | CATG | 1 cut(s) | 251 |
| FaiI | YATR | 4 cut(s) | 176, 230, 249, 396 |
| FaqI | GGGAC | 1 cut(s) | 18 |
| FatI | CATG | 1 cut(s) | 247 |
| Fnu4HI | GCNGC | 5 cut(s) | 116, 150, 153, 345, 348 |
| FokI | GGATG | 1 cut(s) | 383 |
| Fsp4HI | GCNGC | 5 cut(s) | 116, 150, 153, 345, 348 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GlaI | GCGC | 1 cut(s) | 30 |
| GluI | GCNGC | 5 cut(s) | 116, 150, 153, 345, 348 |
| GsuI | CTGGAG | 2 cut(s) | 284, 341 |
| HaeIII | GGCC | 4 cut(s) | 152, 308, 326, 402 |
| HhaI | GCGC | 1 cut(s) | 31 |
| Hin1II | CATG | 1 cut(s) | 251 |
| Hin6I | GCGC | 1 cut(s) | 29 |
| HinP1I | GCGC | 1 cut(s) | 29 |
| HinfI | GANTC | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 2 cut(s) | 18, 54 |
| Hpy188III | TCNNGA | 4 cut(s) | 36, 190, 203, 299 |
| HpyAV | CCTTC | 1 cut(s) | 139 |
| HpyCH4V | TGCA | 3 cut(s) | 118, 350, 398 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 28, 233, 242, 332, 341 |
| HpyF3I | CTNAG | 3 cut(s) | 53, 188, 274 |
| Hsp92II | CATG | 1 cut(s) | 251 |
| HspAI | GCGC | 1 cut(s) | 29 |
| KflI | GGGWCCC | 1 cut(s) | 5 |
| Kzo9I | GATC | 3 cut(s) | 106, 121, 205 |
| LmnI | GCTCC | 1 cut(s) | 265 |
| Lsp1109I | GCAGC | 3 cut(s) | 102, 331, 334 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MalI | GATC | 3 cut(s) | 108, 123, 207 |
| MboI | GATC | 3 cut(s) | 106, 121, 205 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MflI | RGATCY | 2 cut(s) | 121, 205 |
| MluCI | AATT | 1 cut(s) | 218 |
| MseI | TTAA | 1 cut(s) | 221 |
| MspR9I | CCNGG | 3 cut(s) | 311, 320, 368 |
| MvaI | CCWGG | 3 cut(s) | 311, 320, 368 |
| MvnI | CGCG | 2 cut(s) | 69, 155 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 28, 233, 242, 332, 341 |
| NdeII | GATC | 3 cut(s) | 106, 121, 205 |
| NlaIII | CATG | 1 cut(s) | 251 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 7, 182, 194 |
| NotI | GCGGCCGC | 1 cut(s) | 150 |
| PaeR7I | CTCGAG | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 167 |
| PfeI | GAWTC | 1 cut(s) | 199 |
| PkrI | GCNGC | 5 cut(s) | 117, 151, 154, 346, 349 |
| PpuMI | RGGWCCY | 2 cut(s) | 5, 192 |
| Psp5II | RGGWCCY | 2 cut(s) | 5, 192 |
| Psp6I | CCWGG | 3 cut(s) | 309, 318, 366 |
| PspGI | CCWGG | 3 cut(s) | 309, 318, 366 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 7, 182, 194 |
| PspPI | GGNCC | 4 cut(s) | 5, 192, 307, 325 |
| PspPPI | RGGWCCY | 2 cut(s) | 5, 192 |
| PstI | CTGCAG | 2 cut(s) | 120, 352 |
| PsuI | RGATCY | 2 cut(s) | 121, 205 |
| RsaI | GTAC | 1 cut(s) | 60 |
| RsaNI | GTAC | 1 cut(s) | 59 |
| SaqAI | TTAA | 1 cut(s) | 221 |
| SatI | GCNGC | 5 cut(s) | 116, 150, 153, 345, 348 |
| Sau3AI | GATC | 3 cut(s) | 106, 121, 205 |
| Sau96I | GGNCC | 4 cut(s) | 5, 192, 307, 325 |
| ScrFI | CCNGG | 3 cut(s) | 311, 320, 368 |
| SetI | ASST | 3 cut(s) | 43, 291, 346 |
| SfcI | CTRYAG | 2 cut(s) | 116, 348 |
| Sfr274I | CTCGAG | 1 cut(s) | 34 |
| SinI | GGWCC | 2 cut(s) | 5, 192 |
| SlaI | CTCGAG | 1 cut(s) | 34 |
| SmlI | CTYRAG | 3 cut(s) | 34, 297, 339 |
| SmoI | CTYRAG | 3 cut(s) | 34, 297, 339 |
| Sse9I | AATT | 1 cut(s) | 218 |
| SsiI | CCGC | 4 cut(s) | 67, 149, 153, 385 |
| SspMI | CTAG | 1 cut(s) | 237 |
| StyD4I | CCNGG | 3 cut(s) | 309, 318, 366 |
| TaqI | TCGA | 3 cut(s) | 35, 105, 285 |
| TasI | AATT | 1 cut(s) | 218 |
| TauI | GCSGC | 2 cut(s) | 152, 155 |
| TfiI | GAWTC | 1 cut(s) | 199 |
| Tru1I | TTAA | 1 cut(s) | 221 |
| Tru9I | TTAA | 1 cut(s) | 221 |
| TseI | GCWGC | 3 cut(s) | 115, 344, 347 |
| TspDTI | ATGAA | 1 cut(s) | 387 |
| TspGWI | ACGGA | 1 cut(s) | 176 |
| VpaK11BI | GGWCC | 2 cut(s) | 5, 192 |
| XhoI | CTCGAG | 1 cut(s) | 34 |
| XspI | CTAG | 1 cut(s) | 237 |