Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 194 |
| Acc65I | GGTACC | 1 cut(s) | 1096 |
| AccB1I | GGYRCC | 2 cut(s) | 92, 1096 |
| AccII | CGCG | 7 cut(s) | 165, 172, 822, 975, 996, 1327, 1393 |
| AccIII | TCCGGA | 1 cut(s) | 1017 |
| AclI | AACGTT | 1 cut(s) | 702 |
| AclWI | GGATC | 5 cut(s) | 730, 743, 950, 1499, 1549 |
| AcoI | YGGCCR | 7 cut(s) | 616, 789, 1399, 1550, 1573, 1593, 1606 |
| AcsI | RAATTY | 1 cut(s) | 545 |
| AcuI | CTGAAG | 3 cut(s) | 1485, 1497, 1732 |
| AcyI | GRCGYC | 1 cut(s) | 1287 |
| AfaI | GTAC | 4 cut(s) | 583, 833, 1098, 1458 |
| AfeI | AGCGCT | 1 cut(s) | 451 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 248, 377, 585, 647, 1379, 1397, 1548, 1630, 1633 |
| AgeI | ACCGGT | 2 cut(s) | 578, 640 |
| AgsI | TTSAA | 2 cut(s) | 752, 1262 |
| AjnI | CCWGG | 6 cut(s) | 949, 981, 1118, 1136, 1292, 1438 |
| Alw21I | GWGCWC | 4 cut(s) | 933, 1050, 1333, 1650 |
| Alw26I | GTCTC | 5 cut(s) | 143, 161, 1180, 1593, 1642 |
| AlwI | GGATC | 5 cut(s) | 730, 743, 950, 1499, 1549 |
| Ama87I | CYCGRG | 2 cut(s) | 71, 469 |
| Aor13HI | TCCGGA | 1 cut(s) | 1017 |
| Aor51HI | AGCGCT | 1 cut(s) | 451 |
| ApaI | GGGCCC | 1 cut(s) | 655 |
| ApeKI | GCWGC | 6 cut(s) | 200, 269, 447, 1025, 1680, 1693 |
| ApoI | RAATTY | 1 cut(s) | 545 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 302, 334, 1196, 1228 |
| AsiGI | ACCGGT | 2 cut(s) | 578, 640 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1525 |
| Asp718I | GGTACC | 1 cut(s) | 1096 |
| AspLEI | GCGC | 8 cut(s) | 143, 452, 977, 998, 1390, 1395, 1658, 1680 |
| AspS9I | GGNCC | 7 cut(s) | 38, 126, 588, 651, 652, 710, 1709 |
| AsuC2I | CCSGG | 6 cut(s) | 72, 73, 494, 1549, 1563, 1713 |
| AsuNHI | GCTAGC | 1 cut(s) | 1271 |
| AvaI | CYCGRG | 2 cut(s) | 71, 469 |
| AvaII | GGWCC | 3 cut(s) | 588, 710, 1709 |
| BaeGI | GKGCMC | 3 cut(s) | 97, 178, 655 |
| BalI | TGGCCA | 1 cut(s) | 1608 |
| BamHI | GGATCC | 1 cut(s) | 735 |
| BanI | GGYRCC | 2 cut(s) | 92, 1096 |
| BanII | GRGCYC | 5 cut(s) | 387, 633, 655, 1050, 1333 |
| BauI | CACGAG | 2 cut(s) | 177, 243 |
| BbsI | GAAGAC | 1 cut(s) | 16 |
| Bbv12I | GWGCWC | 4 cut(s) | 933, 1050, 1333, 1650 |
| BbvCI | CCTCAGC | 1 cut(s) | 1235 |
| BbvI | GCAGC | 6 cut(s) | 212, 256, 459, 1012, 1667, 1705 |
| BccI | CCATC | 7 cut(s) | 16, 243, 365, 371, 380, 468, 804 |
| BceAI | ACGGC | 4 cut(s) | 631, 747, 1580, 1688 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 798, 832, 1317, 1351 |
| BciT130I | CCWGG | 6 cut(s) | 951, 983, 1120, 1138, 1294, 1440 |
| BciVI | GTATCC | 1 cut(s) | 1257 |
| BcnI | CCSGG | 6 cut(s) | 72, 73, 494, 1549, 1563, 1713 |
| BcoDI | GTCTC | 5 cut(s) | 143, 161, 1180, 1593, 1642 |
| BfaI | CTAG | 5 cut(s) | 185, 878, 1272, 1431, 1653 |
| BfoI | RGCGCY | 3 cut(s) | 453, 1659, 1681 |
| BfuAI | ACCTGC | 1 cut(s) | 194 |
| BfuI | GTATCC | 1 cut(s) | 1257 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1080 |
| BglII | AGATCT | 1 cut(s) | 181 |
| BlpI | GCTNAGC | 1 cut(s) | 435 |
| BmcAI | AGTACT | 2 cut(s) | 833, 1458 |
| Bme18I | GGWCC | 3 cut(s) | 588, 710, 1709 |
| BmeT110I | CYCGRG | 2 cut(s) | 71, 469 |
| BmgT120I | GGNCC | 7 cut(s) | 38, 126, 588, 651, 652, 710, 1709 |
| BmiI | GGNNCC | 7 cut(s) | 94, 652, 653, 712, 737, 1098, 1711 |
| BmsI | GCATC | 4 cut(s) | 672, 694, 1105, 1362 |
| BmtI | GCTAGC | 1 cut(s) | 1275 |
| BpiI | GAAGAC | 1 cut(s) | 16 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 322, 354 |
| BpmI | CTGGAG | 1 cut(s) | 1359 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1235 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 435 |
| BpuEI | CTTGAG | 1 cut(s) | 548 |
| BpuMI | CCSGG | 6 cut(s) | 72, 73, 494, 1549, 1563, 1713 |
| Bsa29I | ATCGAT | 1 cut(s) | 375 |
| BsaHI | GRCGYC | 1 cut(s) | 1287 |
| BsaI | GGTCTC | 3 cut(s) | 1180, 1593, 1642 |
| BsaJI | CCNNGG | 7 cut(s) | 71, 72, 429, 949, 1029, 1396, 1670 |
| BsaWI | WCCGGW | 5 cut(s) | 578, 640, 707, 1017, 1198 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1315, 1345 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 248, 377, 585, 647, 1379, 1397, 1548, 1630, 1633 |
| Bse118I | RCCGGY | 4 cut(s) | 35, 578, 640, 787 |
| Bse1I | ACTGG | 4 cut(s) | 46, 367, 1100, 1515 |
| BseAI | TCCGGA | 1 cut(s) | 1017 |
| BseBI | CCWGG | 6 cut(s) | 951, 983, 1120, 1138, 1294, 1440 |
| BseCI | ATCGAT | 1 cut(s) | 375 |
| BseDI | CCNNGG | 7 cut(s) | 71, 72, 429, 949, 1029, 1396, 1670 |
| BseGI | GGATG | 4 cut(s) | 348, 685, 1014, 1207 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 248, 377, 585, 647, 1379, 1397, 1548, 1630, 1633 |
| BseMII | CTCAG | 6 cut(s) | 66, 449, 843, 1051, 1226, 1272 |
| BseNI | ACTGG | 4 cut(s) | 46, 367, 1100, 1515 |
| BseRI | GAGGAG | 2 cut(s) | 121, 1613 |
| BseSI | GKGCMC | 3 cut(s) | 97, 178, 655 |
| BseX3I | CGGCCG | 4 cut(s) | 616, 789, 1550, 1593 |
| BseXI | GCAGC | 6 cut(s) | 212, 256, 459, 1012, 1667, 1705 |
| BseYI | CCCAGC | 1 cut(s) | 1339 |
| BsgI | GTGCAG | 2 cut(s) | 541, 1712 |
| Bsh1236I | CGCG | 7 cut(s) | 165, 172, 822, 975, 996, 1327, 1393 |
| Bsh1285I | CGRYCG | 5 cut(s) | 510, 619, 792, 1553, 1596 |
| BshNI | GGYRCC | 2 cut(s) | 92, 1096 |
| BshTI | ACCGGT | 2 cut(s) | 578, 640 |
| BshVI | ATCGAT | 1 cut(s) | 375 |
| BsiEI | CGRYCG | 5 cut(s) | 510, 619, 792, 1553, 1596 |
| BsiHKAI | GWGCWC | 4 cut(s) | 933, 1050, 1333, 1650 |
| BsiHKCI | CYCGRG | 2 cut(s) | 71, 469 |
| BslFI | GGGAC | 2 cut(s) | 696, 1088 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 248, 377, 585, 647, 1379, 1397, 1548, 1630, 1633 |
| BsmAI | GTCTC | 5 cut(s) | 143, 161, 1180, 1593, 1642 |
| BsmBI | CGTCTC | 1 cut(s) | 161 |
| BsmFI | GGGAC | 2 cut(s) | 696, 1088 |
| BsmI | GAATGC | 1 cut(s) | 202 |
| Bso31I | GGTCTC | 3 cut(s) | 1180, 1593, 1642 |
| BsoBI | CYCGRG | 2 cut(s) | 71, 469 |
| Bsp120I | GGGCCC | 1 cut(s) | 651 |
| Bsp1286I | GDGCHC | 9 cut(s) | 97, 178, 387, 633, 655, 933, 1050, 1333, 1650 |
| Bsp13I | TCCGGA | 1 cut(s) | 1017 |
| Bsp143I | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 435 |
| Bsp19I | CCATGG | 2 cut(s) | 429, 1396 |
| Bsp68I | TCGCGA | 1 cut(s) | 165 |
| BspCNI | CTCAG | 6 cut(s) | 65, 448, 844, 1050, 1227, 1273 |
| BspDI | ATCGAT | 1 cut(s) | 375 |
| BspEI | TCCGGA | 1 cut(s) | 1017 |
| BspFNI | CGCG | 7 cut(s) | 165, 172, 822, 975, 996, 1327, 1393 |
| BspHI | TCATGA | 1 cut(s) | 1741 |
| BspLI | GGNNCC | 7 cut(s) | 94, 652, 653, 712, 737, 1098, 1711 |
| BspMI | ACCTGC | 1 cut(s) | 194 |
| BspOI | GCTAGC | 1 cut(s) | 1275 |
| BspPI | GGATC | 5 cut(s) | 730, 743, 950, 1499, 1549 |
| BspT107I | GGYRCC | 2 cut(s) | 92, 1096 |
| BspTNI | GGTCTC | 3 cut(s) | 1180, 1593, 1642 |
| BsrFI | RCCGGY | 4 cut(s) | 35, 578, 640, 787 |
| BsrI | ACTGG | 4 cut(s) | 46, 367, 1100, 1515 |
| BssAI | RCCGGY | 4 cut(s) | 35, 578, 640, 787 |
| BssECI | CCNNGG | 7 cut(s) | 71, 72, 429, 949, 1029, 1396, 1670 |
| BssMI | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| BssNI | GRCGYC | 1 cut(s) | 1287 |
| BssSI | CACGAG | 2 cut(s) | 177, 243 |
| BssT1I | CCWWGG | 2 cut(s) | 429, 1396 |
| Bst2BI | CACGAG | 2 cut(s) | 177, 243 |
| Bst2UI | CCWGG | 6 cut(s) | 951, 983, 1120, 1138, 1294, 1440 |
| Bst4CI | ACNGT | 3 cut(s) | 22, 896, 1415 |
| Bst6I | CTCTTC | 1 cut(s) | 1217 |
| BstACI | GRCGYC | 1 cut(s) | 1287 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1460 |
| BstDEI | CTNAG | 6 cut(s) | 52, 435, 852, 1037, 1235, 1281 |
| BstDSI | CCRYGG | 3 cut(s) | 429, 1396, 1670 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1377 |
| BstF5I | GGATG | 4 cut(s) | 348, 685, 1014, 1207 |
| BstFNI | CGCG | 7 cut(s) | 165, 172, 822, 975, 996, 1327, 1393 |
| BstH2I | RGCGCY | 3 cut(s) | 453, 1659, 1681 |
| BstHHI | GCGC | 8 cut(s) | 143, 452, 977, 998, 1390, 1395, 1658, 1680 |
| BstKTI | GATC | 8 cut(s) | 184, 510, 699, 738, 958, 1507, 1557, 1739 |
| BstMAI | GTCTC | 5 cut(s) | 143, 161, 1180, 1593, 1642 |
| BstMBI | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| BstMCI | CGRYCG | 5 cut(s) | 510, 619, 792, 1553, 1596 |
| BstNI | CCWGG | 6 cut(s) | 951, 983, 1120, 1138, 1294, 1440 |
| BstNSI | RCATGY | 1 cut(s) | 889 |
| BstSLI | GKGCMC | 3 cut(s) | 97, 178, 655 |
| BstUI | CGCG | 7 cut(s) | 165, 172, 822, 975, 996, 1327, 1393 |
| BstV1I | GCAGC | 6 cut(s) | 212, 256, 459, 1012, 1667, 1705 |
| BstV2I | GAAGAC | 1 cut(s) | 16 |
| BstX2I | RGATCY | 2 cut(s) | 181, 735 |
| BstYI | RGATCY | 2 cut(s) | 181, 735 |
| BstZI | CGGCCG | 4 cut(s) | 616, 789, 1550, 1593 |
| Bsu15I | ATCGAT | 1 cut(s) | 375 |
| BsuI | GTATCC | 1 cut(s) | 1257 |
| BsuTUI | ATCGAT | 1 cut(s) | 375 |
| BtgI | CCRYGG | 3 cut(s) | 429, 1396, 1670 |
| BtsCI | GGATG | 4 cut(s) | 348, 685, 1014, 1207 |
| BtsIMutI | CAGTG | 2 cut(s) | 360, 1420 |
| BtuMI | TCGCGA | 1 cut(s) | 165 |
| BveI | ACCTGC | 1 cut(s) | 194 |
| CciI | TCATGA | 1 cut(s) | 1741 |
| CfoI | GCGC | 8 cut(s) | 143, 452, 977, 998, 1390, 1395, 1658, 1680 |
| Cfr10I | RCCGGY | 4 cut(s) | 35, 578, 640, 787 |
| Cfr13I | GGNCC | 7 cut(s) | 38, 126, 588, 651, 652, 710, 1709 |
| Cfr9I | CCCGGG | 1 cut(s) | 71 |
| ClaI | ATCGAT | 1 cut(s) | 375 |
| CseI | GACGC | 2 cut(s) | 178, 1295 |
| Csp6I | GTAC | 4 cut(s) | 582, 832, 1097, 1457 |
| CspAI | ACCGGT | 2 cut(s) | 578, 640 |
| CviAII | CATG | 9 cut(s) | 146, 395, 430, 664, 886, 938, 1397, 1613, 1742 |
| CviQI | GTAC | 4 cut(s) | 582, 832, 1097, 1457 |
| DdeI | CTNAG | 6 cut(s) | 52, 435, 852, 1037, 1235, 1281 |
| DpnI | GATC | 8 cut(s) | 183, 509, 698, 737, 957, 1506, 1556, 1738 |
| DpnII | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| EaeI | YGGCCR | 7 cut(s) | 616, 789, 1399, 1550, 1573, 1593, 1606 |
| EagI | CGGCCG | 4 cut(s) | 616, 789, 1550, 1593 |
| Eam1104I | CTCTTC | 1 cut(s) | 1217 |
| EarI | CTCTTC | 1 cut(s) | 1217 |
| EciI | GGCGGA | 2 cut(s) | 749, 980 |
| Ecl136II | GAGCTC | 2 cut(s) | 1048, 1331 |
| EclXI | CGGCCG | 4 cut(s) | 616, 789, 1550, 1593 |
| Eco130I | CCWWGG | 2 cut(s) | 429, 1396 |
| Eco147I | AGGCCT | 1 cut(s) | 1297 |
| Eco24I | GRGCYC | 5 cut(s) | 387, 633, 655, 1050, 1333 |
| Eco31I | GGTCTC | 3 cut(s) | 1180, 1593, 1642 |
| Eco47I | GGWCC | 3 cut(s) | 588, 710, 1709 |
| Eco47III | AGCGCT | 1 cut(s) | 451 |
| Eco52I | CGGCCG | 4 cut(s) | 616, 789, 1550, 1593 |
| Eco53kI | GAGCTC | 2 cut(s) | 1048, 1331 |
| Eco57I | CTGAAG | 3 cut(s) | 1485, 1497, 1732 |
| Eco88I | CYCGRG | 2 cut(s) | 71, 469 |
| EcoICRI | GAGCTC | 2 cut(s) | 1048, 1331 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1377 |
| EcoO109I | RGGNCCY | 2 cut(s) | 651, 652 |
| EcoRII | CCWGG | 6 cut(s) | 949, 981, 1118, 1136, 1292, 1438 |
| EcoT14I | CCWWGG | 2 cut(s) | 429, 1396 |
| EcoT22I | ATGCAT | 1 cut(s) | 687 |
| EcoT38I | GRGCYC | 5 cut(s) | 387, 633, 655, 1050, 1333 |
| ErhI | CCWWGG | 2 cut(s) | 429, 1396 |
| Esp3I | CGTCTC | 1 cut(s) | 161 |
| FaeI | CATG | 9 cut(s) | 149, 398, 433, 667, 889, 941, 1400, 1616, 1745 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 907, 939 |
| FaqI | GGGAC | 2 cut(s) | 696, 1088 |
| FatI | CATG | 9 cut(s) | 145, 394, 429, 663, 885, 937, 1396, 1612, 1741 |
| FauI | CCCGC | 7 cut(s) | 165, 783, 792, 1079, 1113, 1258, 1709 |
| FokI | GGATG | 4 cut(s) | 335, 672, 1001, 1214 |
| FriOI | GRGCYC | 5 cut(s) | 387, 633, 655, 1050, 1333 |
| FspBI | CTAG | 5 cut(s) | 185, 878, 1272, 1431, 1653 |
| GlaI | GCGC | 8 cut(s) | 142, 451, 976, 997, 1389, 1394, 1657, 1679 |
| GsaI | CCCAGC | 1 cut(s) | 1343 |
| GsuI | CTGGAG | 1 cut(s) | 1359 |
| HaeII | RGCGCY | 3 cut(s) | 453, 1659, 1681 |
| HgaI | GACGC | 2 cut(s) | 178, 1295 |
| HhaI | GCGC | 8 cut(s) | 143, 452, 977, 998, 1390, 1395, 1658, 1680 |
| Hin1I | GRCGYC | 1 cut(s) | 1287 |
| Hin1II | CATG | 9 cut(s) | 149, 398, 433, 667, 889, 941, 1400, 1616, 1745 |
| Hin6I | GCGC | 8 cut(s) | 141, 450, 975, 996, 1388, 1393, 1656, 1678 |
| HinP1I | GCGC | 8 cut(s) | 141, 450, 975, 996, 1388, 1393, 1656, 1678 |
| HincII | GTYRAC | 1 cut(s) | 1183 |
| HindII | GTYRAC | 1 cut(s) | 1183 |
| HinfI | GANTC | 9 cut(s) | 67, 407, 516, 918, 1146, 1192, 1240, 1481, 1661 |
| Hpy166II | GTNNAC | 2 cut(s) | 1183, 1367 |
| Hpy8I | GTNNAC | 2 cut(s) | 1183, 1367 |
| Hpy99I | CGWCG | 1 cut(s) | 1505 |
| HpyAV | CCTTC | 7 cut(s) | 57, 574, 700, 724, 933, 1373, 1444 |
| HpyCH4III | ACNGT | 3 cut(s) | 22, 896, 1415 |
| HpyCH4IV | ACGT | 1 cut(s) | 702 |
| HpyCH4V | TGCA | 7 cut(s) | 200, 394, 543, 558, 685, 1683, 1693 |
| HpyF3I | CTNAG | 6 cut(s) | 52, 435, 852, 1037, 1235, 1281 |
| HpySE526I | ACGT | 1 cut(s) | 702 |
| Hsp92I | GRCGYC | 1 cut(s) | 1287 |
| Hsp92II | CATG | 9 cut(s) | 149, 398, 433, 667, 889, 941, 1400, 1616, 1745 |
| HspAI | GCGC | 8 cut(s) | 141, 450, 975, 996, 1388, 1393, 1656, 1678 |
| Kpn2I | TCCGGA | 1 cut(s) | 1017 |
| KpnI | GGTACC | 1 cut(s) | 1100 |
| KroI | GCCGGC | 2 cut(s) | 35, 787 |
| KroNI | GCCGGC | 2 cut(s) | 37, 789 |
| Kzo9I | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| LmnI | GCTCC | 5 cut(s) | 936, 1060, 1311, 1336, 1783 |
| Lsp1109I | GCAGC | 6 cut(s) | 212, 256, 459, 1012, 1667, 1705 |
| LweI | GCATC | 4 cut(s) | 672, 694, 1105, 1362 |
| MaeI | CTAG | 5 cut(s) | 185, 878, 1272, 1431, 1653 |
| MaeII | ACGT | 1 cut(s) | 702 |
| MaeIII | GTNAC | 2 cut(s) | 334, 896 |
| MalI | GATC | 8 cut(s) | 183, 509, 698, 737, 957, 1506, 1556, 1738 |
| MboI | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| MfeI | CAATTG | 2 cut(s) | 797, 1091 |
| MflI | RGATCY | 2 cut(s) | 181, 735 |
| MhlI | GDGCHC | 9 cut(s) | 97, 178, 387, 633, 655, 933, 1050, 1333, 1650 |
| MlsI | TGGCCA | 1 cut(s) | 1608 |
| MluNI | TGGCCA | 1 cut(s) | 1608 |
| MlyI | GAGTC | 3 cut(s) | 61, 401, 1186 |
| MmeI | TCCRAC | 3 cut(s) | 324, 958, 1582 |
| Mox20I | TGGCCA | 1 cut(s) | 1608 |
| Mph1103I | ATGCAT | 1 cut(s) | 687 |
| MroI | TCCGGA | 1 cut(s) | 1017 |
| MroNI | GCCGGC | 2 cut(s) | 35, 787 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1525 |
| MscI | TGGCCA | 1 cut(s) | 1608 |
| MseI | TTAA | 1 cut(s) | 902 |
| Msp20I | TGGCCA | 1 cut(s) | 1608 |
| MspA1I | CMGCKG | 3 cut(s) | 1108, 1253, 1475 |
| MteI | GCGCNGCGC | 1 cut(s) | 1391 |
| MunI | CAATTG | 2 cut(s) | 797, 1091 |
| Mva1269I | GAATGC | 1 cut(s) | 202 |
| MvaI | CCWGG | 6 cut(s) | 951, 983, 1120, 1138, 1294, 1440 |
| MvnI | CGCG | 7 cut(s) | 165, 172, 822, 975, 996, 1327, 1393 |
| NaeI | GCCGGC | 2 cut(s) | 37, 789 |
| NciI | CCSGG | 6 cut(s) | 72, 73, 494, 1549, 1563, 1713 |
| NcoI | CCATGG | 2 cut(s) | 429, 1396 |
| NdeII | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| NgoMIV | GCCGGC | 2 cut(s) | 35, 787 |
| NheI | GCTAGC | 1 cut(s) | 1271 |
| NlaIII | CATG | 9 cut(s) | 149, 398, 433, 667, 889, 941, 1400, 1616, 1745 |
| NlaIV | GGNNCC | 7 cut(s) | 94, 652, 653, 712, 737, 1098, 1711 |
| NmeAIII | GCCGAG | 1 cut(s) | 1054 |
| NmuCI | GTSAC | 1 cut(s) | 896 |
| NruI | TCGCGA | 1 cut(s) | 165 |
| NsiI | ATGCAT | 1 cut(s) | 687 |
| NspI | RCATGY | 1 cut(s) | 889 |
| PagI | TCATGA | 1 cut(s) | 1741 |
| PceI | AGGCCT | 1 cut(s) | 1297 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 699, 1535, 1624 |
| PctI | GAATGC | 1 cut(s) | 202 |
| PdiI | GCCGGC | 2 cut(s) | 37, 789 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1525 |
| PfeI | GAWTC | 6 cut(s) | 516, 918, 1146, 1240, 1481, 1661 |
| PinAI | ACCGGT | 2 cut(s) | 578, 640 |
| Ple19I | CGATCG | 1 cut(s) | 510 |
| PleI | GAGTC | 3 cut(s) | 61, 401, 1186 |
| PpsI | GAGTC | 3 cut(s) | 61, 401, 1186 |
| Psp124BI | GAGCTC | 2 cut(s) | 1050, 1333 |
| Psp1406I | AACGTT | 1 cut(s) | 702 |
| Psp6I | CCWGG | 6 cut(s) | 949, 981, 1118, 1136, 1292, 1438 |
| PspFI | CCCAGC | 1 cut(s) | 1339 |
| PspGI | CCWGG | 6 cut(s) | 949, 981, 1118, 1136, 1292, 1438 |
| PspN4I | GGNNCC | 7 cut(s) | 94, 652, 653, 712, 737, 1098, 1711 |
| PspOMI | GGGCCC | 1 cut(s) | 651 |
| PspPI | GGNCC | 7 cut(s) | 38, 126, 588, 651, 652, 710, 1709 |
| PsuI | RGATCY | 2 cut(s) | 181, 735 |
| PvuI | CGATCG | 1 cut(s) | 510 |
| PvuII | CAGCTG | 1 cut(s) | 1475 |
| RruI | TCGCGA | 1 cut(s) | 165 |
| RsaI | GTAC | 4 cut(s) | 583, 833, 1098, 1458 |
| RsaNI | GTAC | 4 cut(s) | 582, 832, 1097, 1457 |
| SacI | GAGCTC | 2 cut(s) | 1050, 1333 |
| SaqAI | TTAA | 1 cut(s) | 902 |
| Sau3AI | GATC | 8 cut(s) | 181, 507, 696, 735, 955, 1504, 1554, 1736 |
| Sau96I | GGNCC | 7 cut(s) | 38, 126, 588, 651, 652, 710, 1709 |
| ScaI | AGTACT | 2 cut(s) | 833, 1458 |
| SchI | GAGTC | 3 cut(s) | 61, 401, 1186 |
| SduI | GDGCHC | 9 cut(s) | 97, 178, 387, 633, 655, 933, 1050, 1333, 1650 |
| SfaNI | GCATC | 4 cut(s) | 672, 694, 1105, 1362 |
| SinI | GGWCC | 3 cut(s) | 588, 710, 1709 |
| SmaI | CCCGGG | 1 cut(s) | 73 |
| SmlI | CTYRAG | 1 cut(s) | 527 |
| SmoI | CTYRAG | 1 cut(s) | 527 |
| SseBI | AGGCCT | 1 cut(s) | 1297 |
| SspMI | CTAG | 5 cut(s) | 185, 878, 1272, 1431, 1653 |
| SstI | GAGCTC | 2 cut(s) | 1050, 1333 |
| StuI | AGGCCT | 1 cut(s) | 1297 |
| StyI | CCWWGG | 2 cut(s) | 429, 1396 |
| TaaI | ACNGT | 3 cut(s) | 22, 896, 1415 |
| TaiI | ACGT | 1 cut(s) | 705 |
| TaqI | TCGA | 8 cut(s) | 375, 405, 425, 693, 808, 1300, 1519, 1529 |
| TatI | WGTACW | 2 cut(s) | 831, 1456 |
| TauI | GCSGC | 8 cut(s) | 621, 822, 996, 1393, 1404, 1407, 1585, 1678 |
| TfiI | GAWTC | 6 cut(s) | 516, 918, 1146, 1240, 1481, 1661 |
| Tru1I | TTAA | 1 cut(s) | 902 |
| Tru9I | TTAA | 1 cut(s) | 902 |
| TscAI | CASTG | 2 cut(s) | 367, 1420 |
| TseFI | GTSAC | 1 cut(s) | 896 |
| TseI | GCWGC | 6 cut(s) | 200, 269, 447, 1025, 1680, 1693 |
| Tsp45I | GTSAC | 1 cut(s) | 896 |
| TspDTI | ATGAA | 4 cut(s) | 453, 538, 1410, 1653 |
| TspGWI | ACGGA | 2 cut(s) | 1233, 1616 |
| TspMI | CCCGGG | 1 cut(s) | 71 |
| TspRI | CASTG | 2 cut(s) | 367, 1420 |
| VpaK11BI | GGWCC | 3 cut(s) | 588, 710, 1709 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1377 |
| XapI | RAATTY | 1 cut(s) | 545 |
| XbaI | TCTAGA | 1 cut(s) | 1430 |
| XceI | RCATGY | 1 cut(s) | 889 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 242 |
| XmaI | CCCGGG | 1 cut(s) | 71 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1525 |
| XspI | CTAG | 5 cut(s) | 185, 878, 1272, 1431, 1653 |
| ZrmI | AGTACT | 2 cut(s) | 833, 1458 |
| Zsp2I | ATGCAT | 1 cut(s) | 687 |