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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 418, 1097 |
| AccBSI | CCGCTC | 1 cut(s) | 963 |
| AccII | CGCG | 9 cut(s) | 64, 102, 506, 716, 859, 899, 985, 991, 1257 |
| AccIII | TCCGGA | 1 cut(s) | 382 |
| AclWI | GGATC | 2 cut(s) | 27, 434 |
| AcoI | YGGCCR | 1 cut(s) | 753 |
| AcuI | CTGAAG | 3 cut(s) | 159, 696, 1112 |
| AfaI | GTAC | 3 cut(s) | 298, 414, 513 |
| AfeI | AGCGCT | 1 cut(s) | 435 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 76, 82, 680, 751, 1182, 1273 |
| AgsI | TTSAA | 2 cut(s) | 464, 1121 |
| AjnI | CCWGG | 2 cut(s) | 81, 666 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 615, 647 |
| Alw21I | GWGCWC | 3 cut(s) | 129, 873, 928 |
| Alw26I | GTCTC | 1 cut(s) | 1239 |
| Alw44I | GTGCAC | 1 cut(s) | 924 |
| AlwI | GGATC | 2 cut(s) | 27, 434 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 838 |
| Ama87I | CYCGRG | 2 cut(s) | 356, 800 |
| Aor13HI | TCCGGA | 1 cut(s) | 382 |
| Aor51HI | AGCGCT | 1 cut(s) | 435 |
| ApaLI | GTGCAC | 1 cut(s) | 924 |
| ApeKI | GCWGC | 6 cut(s) | 26, 224, 374, 749, 1283, 1286 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 169, 201 |
| AscI | GGCGCGCC | 1 cut(s) | 857 |
| AspLEI | GCGC | 5 cut(s) | 64, 436, 859, 861, 993 |
| AsuC2I | CCSGG | 2 cut(s) | 77, 854 |
| AsuHPI | GGTGA | 3 cut(s) | 345, 658, 1180 |
| AsuII | TTCGAA | 1 cut(s) | 1224 |
| AvaI | CYCGRG | 2 cut(s) | 356, 800 |
| AvaII | GGWCC | 4 cut(s) | 192, 835, 1086, 1110 |
| BaeGI | GKGCMC | 1 cut(s) | 928 |
| BanII | GRGCYC | 2 cut(s) | 70, 873 |
| Bbv12I | GWGCWC | 3 cut(s) | 129, 873, 928 |
| BbvCI | CCTCAGC | 1 cut(s) | 1197 |
| BbvI | GCAGC | 6 cut(s) | 13, 211, 386, 736, 1270, 1273 |
| BccI | CCATC | 2 cut(s) | 400, 731 |
| BceAI | ACGGC | 1 cut(s) | 1188 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 164, 198, 313, 347 |
| BciT130I | CCWGG | 2 cut(s) | 83, 668 |
| BcnI | CCSGG | 2 cut(s) | 77, 854 |
| BcoDI | GTCTC | 1 cut(s) | 1239 |
| BfaI | CTAG | 4 cut(s) | 362, 998, 1202, 1296 |
| BfoI | RGCGCY | 1 cut(s) | 437 |
| BfuAI | ACCTGC | 2 cut(s) | 418, 1097 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 668 |
| BglII | AGATCT | 1 cut(s) | 466 |
| BisI | GCNGC | 9 cut(s) | 27, 225, 375, 717, 750, 753, 897, 1284, 1287 |
| BlsI | GCNGC | 9 cut(s) | 28, 226, 376, 718, 751, 754, 898, 1285, 1288 |
| Bme1390I | CCNGG | 4 cut(s) | 77, 83, 668, 854 |
| Bme18I | GGWCC | 4 cut(s) | 192, 835, 1086, 1110 |
| BmeT110I | CYCGRG | 2 cut(s) | 356, 800 |
| BmiI | GGNNCC | 8 cut(s) | 238, 402, 672, 702, 708, 720, 1087, 1194 |
| BmrFI | CCNGG | 4 cut(s) | 77, 83, 668, 854 |
| BmrI | ACTGGG | 1 cut(s) | 1150 |
| BmsI | GCATC | 2 cut(s) | 13, 376 |
| BmuI | ACTGGG | 1 cut(s) | 1150 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1061, 1093 |
| BpmI | CTGGAG | 3 cut(s) | 96, 228, 612 |
| Bpu10I | CCTNAGC | 2 cut(s) | 872, 1197 |
| Bpu14I | TTCGAA | 1 cut(s) | 1224 |
| BpuEI | CTTGAG | 3 cut(s) | 636, 720, 979 |
| BpuMI | CCSGG | 2 cut(s) | 77, 854 |
| BsaJI | CCNNGG | 4 cut(s) | 81, 264, 666, 1164 |
| BsaWI | WCCGGW | 3 cut(s) | 382, 499, 703 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 76, 82, 680, 751, 1182, 1273 |
| Bse118I | RCCGGY | 1 cut(s) | 189 |
| Bse1I | ACTGG | 3 cut(s) | 294, 629, 1156 |
| Bse3DI | GCAATG | 1 cut(s) | 1236 |
| BseAI | TCCGGA | 1 cut(s) | 382 |
| BseBI | CCWGG | 2 cut(s) | 83, 668 |
| BseDI | CCNNGG | 4 cut(s) | 81, 264, 666, 1164 |
| BseGI | GGATG | 3 cut(s) | 28, 391, 1315 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 76, 82, 680, 751, 1182, 1273 |
| BseMI | GCAATG | 1 cut(s) | 1236 |
| BseNI | ACTGG | 3 cut(s) | 294, 629, 1156 |
| BsePI | GCGCGC | 1 cut(s) | 857 |
| BseRI | GAGGAG | 2 cut(s) | 413, 1289 |
| BseSI | GKGCMC | 1 cut(s) | 928 |
| BseXI | GCAGC | 6 cut(s) | 13, 211, 386, 736, 1270, 1273 |
| BseYI | CCCAGC | 2 cut(s) | 36, 1176 |
| BsgI | GTGCAG | 4 cut(s) | 12, 353, 393, 446 |
| Bsh1236I | CGCG | 9 cut(s) | 64, 102, 506, 716, 859, 899, 985, 991, 1257 |
| Bsh1285I | CGRYCG | 3 cut(s) | 504, 983, 989 |
| BsiEI | CGRYCG | 3 cut(s) | 504, 983, 989 |
| BsiHKAI | GWGCWC | 3 cut(s) | 129, 873, 928 |
| BsiHKCI | CYCGRG | 2 cut(s) | 356, 800 |
| BsiSI | CCGG | 7 cut(s) | 47, 77, 190, 383, 500, 704, 853 |
| BslFI | GGGAC | 1 cut(s) | 1099 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 76, 82, 680, 751, 1182, 1273 |
| BsmAI | GTCTC | 1 cut(s) | 1239 |
| BsmFI | GGGAC | 1 cut(s) | 1099 |
| BsmI | GAATGC | 1 cut(s) | 313 |
| BsoBI | CYCGRG | 2 cut(s) | 356, 800 |
| Bsp119I | TTCGAA | 1 cut(s) | 1224 |
| Bsp1286I | GDGCHC | 4 cut(s) | 70, 129, 873, 928 |
| Bsp13I | TCCGGA | 1 cut(s) | 382 |
| Bsp1407I | TGTACA | 1 cut(s) | 412 |
| Bsp143I | GATC | 4 cut(s) | 32, 336, 439, 466 |
| Bsp68I | TCGCGA | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 382 |
| BspFNI | CGCG | 9 cut(s) | 64, 102, 506, 716, 859, 899, 985, 991, 1257 |
| BspLI | GGNNCC | 8 cut(s) | 238, 402, 672, 702, 708, 720, 1087, 1194 |
| BspMI | ACCTGC | 2 cut(s) | 418, 1097 |
| BspPI | GGATC | 2 cut(s) | 27, 434 |
| BspQI | GCTCTTC | 1 cut(s) | 223 |
| BspT104I | TTCGAA | 1 cut(s) | 1224 |
| BsrBI | CCGCTC | 1 cut(s) | 963 |
| BsrDI | GCAATG | 1 cut(s) | 1236 |
| BsrFI | RCCGGY | 1 cut(s) | 189 |
| BsrGI | TGTACA | 1 cut(s) | 412 |
| BsrI | ACTGG | 3 cut(s) | 294, 629, 1156 |
| BssAI | RCCGGY | 1 cut(s) | 189 |
| BssECI | CCNNGG | 4 cut(s) | 81, 264, 666, 1164 |
| BssHII | GCGCGC | 1 cut(s) | 857 |
| BssMI | GATC | 4 cut(s) | 32, 336, 439, 466 |
| Bst2UI | CCWGG | 2 cut(s) | 83, 668 |
| Bst4CI | ACNGT | 3 cut(s) | 181, 592, 1168 |
| Bst6I | CTCTTC | 2 cut(s) | 48, 223 |
| BstAUI | TGTACA | 1 cut(s) | 412 |
| BstBI | TTCGAA | 1 cut(s) | 1224 |
| BstDSI | CCRYGG | 2 cut(s) | 264, 1164 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 678 |
| BstF5I | GGATG | 3 cut(s) | 28, 391, 1315 |
| BstFNI | CGCG | 9 cut(s) | 64, 102, 506, 716, 859, 899, 985, 991, 1257 |
| BstH2I | RGCGCY | 1 cut(s) | 437 |
| BstHHI | GCGC | 5 cut(s) | 64, 436, 859, 861, 993 |
| BstKTI | GATC | 4 cut(s) | 35, 339, 442, 469 |
| BstMAI | GTCTC | 1 cut(s) | 1239 |
| BstMBI | GATC | 4 cut(s) | 32, 336, 439, 466 |
| BstMCI | CGRYCG | 3 cut(s) | 504, 983, 989 |
| BstNI | CCWGG | 2 cut(s) | 83, 668 |
| BstNSI | RCATGY | 1 cut(s) | 206 |
| BstSCI | CCNGG | 4 cut(s) | 75, 81, 666, 852 |
| BstSLI | GKGCMC | 1 cut(s) | 928 |
| BstUI | CGCG | 9 cut(s) | 64, 102, 506, 716, 859, 899, 985, 991, 1257 |
| BstV1I | GCAGC | 6 cut(s) | 13, 211, 386, 736, 1270, 1273 |
| BstX2I | RGATCY | 1 cut(s) | 466 |
| BstYI | RGATCY | 1 cut(s) | 466 |
| BtgI | CCRYGG | 2 cut(s) | 264, 1164 |
| BtsCI | GGATG | 3 cut(s) | 28, 391, 1315 |
| BtsI | GCAGTG | 1 cut(s) | 756 |
| BtsIMutI | CAGTG | 3 cut(s) | 726, 756, 911 |
| BtuMI | TCGCGA | 1 cut(s) | 102 |
| BveI | ACCTGC | 2 cut(s) | 418, 1097 |
| CaiI | CAGNNNCTG | 1 cut(s) | 838 |
| CfoI | GCGC | 5 cut(s) | 64, 436, 859, 861, 993 |
| Cfr10I | RCCGGY | 1 cut(s) | 189 |
| CseI | GACGC | 2 cut(s) | 722, 1301 |
| Csp6I | GTAC | 3 cut(s) | 297, 413, 512 |
| CviAII | CATG | 4 cut(s) | 203, 788, 885, 1334 |
| CviQI | GTAC | 3 cut(s) | 297, 413, 512 |
| DpnI | GATC | 4 cut(s) | 34, 338, 441, 468 |
| DpnII | GATC | 4 cut(s) | 32, 336, 439, 466 |
| EaeI | YGGCCR | 1 cut(s) | 753 |
| Eam1104I | CTCTTC | 2 cut(s) | 48, 223 |
| EarI | CTCTTC | 2 cut(s) | 48, 223 |
| Ecl136II | GAGCTC | 1 cut(s) | 871 |
| Eco147I | AGGCCT | 2 cut(s) | 1025, 1045 |
| Eco24I | GRGCYC | 2 cut(s) | 70, 873 |
| Eco47I | GGWCC | 4 cut(s) | 192, 835, 1086, 1110 |
| Eco47III | AGCGCT | 1 cut(s) | 435 |
| Eco53kI | GAGCTC | 1 cut(s) | 871 |
| Eco57I | CTGAAG | 3 cut(s) | 159, 696, 1112 |
| Eco88I | CYCGRG | 2 cut(s) | 356, 800 |
| EcoICRI | GAGCTC | 1 cut(s) | 871 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 678 |
| EcoO109I | RGGNCCY | 2 cut(s) | 835, 1086 |
| EcoRII | CCWGG | 2 cut(s) | 81, 666 |
| EcoT38I | GRGCYC | 2 cut(s) | 70, 873 |
| FaeI | CATG | 4 cut(s) | 206, 791, 888, 1337 |
| FaqI | GGGAC | 1 cut(s) | 1099 |
| FatI | CATG | 4 cut(s) | 202, 787, 884, 1333 |
| FauI | CCCGC | 2 cut(s) | 804, 1330 |
| Fnu4HI | GCNGC | 9 cut(s) | 27, 225, 375, 717, 750, 753, 897, 1284, 1287 |
| FokI | GGATG | 3 cut(s) | 35, 398, 1322 |
| FriOI | GRGCYC | 2 cut(s) | 70, 873 |
| Fsp4HI | GCNGC | 9 cut(s) | 27, 225, 375, 717, 750, 753, 897, 1284, 1287 |
| FspBI | CTAG | 4 cut(s) | 362, 998, 1202, 1296 |
| GlaI | GCGC | 5 cut(s) | 63, 435, 858, 860, 992 |
| GluI | GCNGC | 9 cut(s) | 27, 225, 375, 717, 750, 753, 897, 1284, 1287 |
| GsaI | CCCAGC | 2 cut(s) | 40, 1180 |
| GsuI | CTGGAG | 3 cut(s) | 96, 228, 612 |
| HaeII | RGCGCY | 1 cut(s) | 437 |
| HapII | CCGG | 7 cut(s) | 47, 77, 190, 383, 500, 704, 853 |
| HgaI | GACGC | 2 cut(s) | 722, 1301 |
| HhaI | GCGC | 5 cut(s) | 64, 436, 859, 861, 993 |
| Hin1II | CATG | 4 cut(s) | 206, 791, 888, 1337 |
| Hin6I | GCGC | 5 cut(s) | 62, 434, 857, 859, 991 |
| HinP1I | GCGC | 5 cut(s) | 62, 434, 857, 859, 991 |
| HincII | GTYRAC | 1 cut(s) | 1161 |
| HindII | GTYRAC | 1 cut(s) | 1161 |
| HinfI | GANTC | 4 cut(s) | 149, 269, 325, 649 |
| HpaII | CCGG | 7 cut(s) | 47, 77, 190, 383, 500, 704, 853 |
| HphI | GGTGA | 3 cut(s) | 345, 658, 1180 |
| Hpy166II | GTNNAC | 4 cut(s) | 353, 514, 926, 1161 |
| Hpy188I | TCNGA | 7 cut(s) | 19, 160, 397, 451, 564, 597, 1239 |
| Hpy8I | GTNNAC | 4 cut(s) | 353, 514, 926, 1161 |
| Hpy99I | CGWCG | 2 cut(s) | 189, 1295 |
| HpyAV | CCTTC | 5 cut(s) | 206, 359, 389, 581, 1231 |
| HpyCH4III | ACNGT | 3 cut(s) | 181, 592, 1168 |
| Hsp92II | CATG | 4 cut(s) | 206, 791, 888, 1337 |
| HspAI | GCGC | 5 cut(s) | 62, 434, 857, 859, 991 |
| Kpn2I | TCCGGA | 1 cut(s) | 382 |
| Kzo9I | GATC | 4 cut(s) | 32, 336, 439, 466 |
| LguI | GCTCTTC | 1 cut(s) | 223 |
| LmnI | GCTCC | 6 cut(s) | 400, 676, 683, 706, 796, 1276 |
| Lsp1109I | GCAGC | 6 cut(s) | 13, 211, 386, 736, 1270, 1273 |
| LweI | GCATC | 2 cut(s) | 13, 376 |
| MaeI | CTAG | 4 cut(s) | 362, 998, 1202, 1296 |
| MaeIII | GTNAC | 2 cut(s) | 646, 1168 |
| MalI | GATC | 4 cut(s) | 34, 338, 441, 468 |
| MbiI | CCGCTC | 1 cut(s) | 963 |
| MboI | GATC | 4 cut(s) | 32, 336, 439, 466 |
| MboII | GAAGA | 5 cut(s) | 35, 144, 210, 272, 946 |
| MfeI | CAATTG | 1 cut(s) | 1136 |
| MflI | RGATCY | 1 cut(s) | 466 |
| MhlI | GDGCHC | 4 cut(s) | 70, 129, 873, 928 |
| MluCI | AATT | 3 cut(s) | 96, 483, 1136 |
| MlyI | GAGTC | 1 cut(s) | 643 |
| MmeI | TCCRAC | 2 cut(s) | 620, 1291 |
| MroI | TCCGGA | 1 cut(s) | 382 |
| MspI | CCGG | 7 cut(s) | 47, 77, 190, 383, 500, 704, 853 |
| MspR9I | CCNGG | 4 cut(s) | 77, 83, 668, 854 |
| MunI | CAATTG | 1 cut(s) | 1136 |
| Mva1269I | GAATGC | 1 cut(s) | 313 |
| MvaI | CCWGG | 2 cut(s) | 83, 668 |
| MvnI | CGCG | 9 cut(s) | 64, 102, 506, 716, 859, 899, 985, 991, 1257 |
| NciI | CCSGG | 2 cut(s) | 77, 854 |
| NdeII | GATC | 4 cut(s) | 32, 336, 439, 466 |
| NlaIII | CATG | 4 cut(s) | 206, 791, 888, 1337 |
| NlaIV | GGNNCC | 8 cut(s) | 238, 402, 672, 702, 708, 720, 1087, 1194 |
| NmeAIII | GCCGAG | 1 cut(s) | 945 |
| NmuCI | GTSAC | 2 cut(s) | 646, 1168 |
| NruI | TCGCGA | 1 cut(s) | 102 |
| NspI | RCATGY | 1 cut(s) | 206 |
| NspV | TTCGAA | 1 cut(s) | 1224 |
| PalAI | GGCGCGCC | 1 cut(s) | 857 |
| PauI | GCGCGC | 1 cut(s) | 857 |
| PceI | AGGCCT | 2 cut(s) | 1025, 1045 |
| PciSI | GCTCTTC | 1 cut(s) | 223 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 99, 900 |
| PctI | GAATGC | 1 cut(s) | 313 |
| PfeI | GAWTC | 3 cut(s) | 149, 269, 325 |
| PkrI | GCNGC | 9 cut(s) | 28, 226, 376, 718, 751, 754, 898, 1285, 1288 |
| PleI | GAGTC | 1 cut(s) | 643 |
| PpsI | GAGTC | 1 cut(s) | 643 |
| PpuMI | RGGWCCY | 2 cut(s) | 835, 1086 |
| Psp124BI | GAGCTC | 1 cut(s) | 873 |
| Psp5II | RGGWCCY | 2 cut(s) | 835, 1086 |
| Psp6I | CCWGG | 2 cut(s) | 81, 666 |
| PspFI | CCCAGC | 2 cut(s) | 36, 1176 |
| PspGI | CCWGG | 2 cut(s) | 81, 666 |
| PspN4I | GGNNCC | 8 cut(s) | 238, 402, 672, 702, 708, 720, 1087, 1194 |
| PspPPI | RGGWCCY | 2 cut(s) | 835, 1086 |
| PstNI | CAGNNNCTG | 1 cut(s) | 838 |
| PsuI | RGATCY | 1 cut(s) | 466 |
| PteI | GCGCGC | 1 cut(s) | 857 |
| RruI | TCGCGA | 1 cut(s) | 102 |
| RsaI | GTAC | 3 cut(s) | 298, 414, 513 |
| RsaNI | GTAC | 3 cut(s) | 297, 413, 512 |
| SacI | GAGCTC | 1 cut(s) | 873 |
| SapI | GCTCTTC | 1 cut(s) | 223 |
| SatI | GCNGC | 9 cut(s) | 27, 225, 375, 717, 750, 753, 897, 1284, 1287 |
| Sau3AI | GATC | 4 cut(s) | 32, 336, 439, 466 |
| SchI | GAGTC | 1 cut(s) | 643 |
| ScrFI | CCNGG | 4 cut(s) | 77, 83, 668, 854 |
| SduI | GDGCHC | 4 cut(s) | 70, 129, 873, 928 |
| SfaNI | GCATC | 2 cut(s) | 13, 376 |
| SfuI | TTCGAA | 1 cut(s) | 1224 |
| SgsI | GGCGCGCC | 1 cut(s) | 857 |
| SinI | GGWCC | 4 cut(s) | 192, 835, 1086, 1110 |
| SmlI | CTYRAG | 3 cut(s) | 651, 735, 958 |
| SmoI | CTYRAG | 3 cut(s) | 651, 735, 958 |
| Sse9I | AATT | 3 cut(s) | 96, 483, 1136 |
| SseBI | AGGCCT | 2 cut(s) | 1025, 1045 |
| SspI | AATATT | 1 cut(s) | 880 |
| SspMI | CTAG | 4 cut(s) | 362, 998, 1202, 1296 |
| SstI | GAGCTC | 1 cut(s) | 873 |
| StuI | AGGCCT | 2 cut(s) | 1025, 1045 |
| StyD4I | CCNGG | 4 cut(s) | 75, 81, 666, 852 |
| TaaI | ACNGT | 3 cut(s) | 181, 592, 1168 |
| TaqI | TCGA | 4 cut(s) | 323, 1020, 1143, 1224 |
| TasI | AATT | 3 cut(s) | 96, 483, 1136 |
| TatI | WGTACW | 1 cut(s) | 412 |
| TauI | GCSGC | 3 cut(s) | 719, 755, 899 |
| TfiI | GAWTC | 3 cut(s) | 149, 269, 325 |
| TscAI | CASTG | 3 cut(s) | 733, 763, 918 |
| TseFI | GTSAC | 2 cut(s) | 646, 1168 |
| TseI | GCWGC | 6 cut(s) | 26, 224, 374, 749, 1283, 1286 |
| Tsp45I | GTSAC | 2 cut(s) | 646, 1168 |
| TspDTI | ATGAA | 2 cut(s) | 873, 1326 |
| TspGWI | ACGGA | 2 cut(s) | 281, 547 |
| TspRI | CASTG | 3 cut(s) | 733, 763, 918 |
| VneI | GTGCAC | 1 cut(s) | 924 |
| VpaK11BI | GGWCC | 4 cut(s) | 192, 835, 1086, 1110 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 678 |
| XceI | RCATGY | 1 cut(s) | 206 |
| XspI | CTAG | 4 cut(s) | 362, 998, 1202, 1296 |