Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 2460 |
| Acc36I | ACCTGC | 2 cut(s) | 371, 1825 |
| AccB1I | GGYRCC | 3 cut(s) | 83, 269, 2039 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 425, 1475, 1792 |
| AccBSI | CCGCTC | 5 cut(s) | 215, 442, 2144, 2371, 2447 |
| AccI | GTMKAC | 1 cut(s) | 2984 |
| AccIII | TCCGGA | 1 cut(s) | 1484 |
| AclWI | GGATC | 3 cut(s) | 1031, 2894, 2907 |
| AcoI | YGGCCR | 5 cut(s) | 183, 302, 1320, 1724, 2001 |
| AcsI | RAATTY | 2 cut(s) | 722, 1275 |
| AcuI | CTGAAG | 2 cut(s) | 1404, 2124 |
| AcvI | CACGTG | 1 cut(s) | 422 |
| AcyI | GRCGYC | 3 cut(s) | 189, 1230, 2040 |
| AdeI | CACNNNGTG | 1 cut(s) | 425 |
| AfaI | GTAC | 9 cut(s) | 760, 836, 875, 1115, 1647, 2034, 2241, 2869, 3134 |
| AfeI | AGCGCT | 1 cut(s) | 628 |
| AflIII | ACRYGT | 1 cut(s) | 2793 |
| AgeI | ACCGGT | 1 cut(s) | 817 |
| AhlI | ACTAGT | 1 cut(s) | 755 |
| AjiI | CACGTC | 2 cut(s) | 148, 1810 |
| Alw21I | GWGCWC | 1 cut(s) | 678 |
| Alw26I | GTCTC | 8 cut(s) | 101, 246, 1644, 2526, 2547, 2691, 2910, 3055 |
| AlwI | GGATC | 3 cut(s) | 1031, 2894, 2907 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1475 |
| Ama87I | CYCGRG | 1 cut(s) | 3076 |
| Aor13HI | TCCGGA | 1 cut(s) | 1484 |
| Aor51HI | AGCGCT | 1 cut(s) | 628 |
| ApaI | GGGCCC | 1 cut(s) | 1158 |
| ApoI | RAATTY | 2 cut(s) | 722, 1275 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1298, 1330 |
| AseI | ATTAAT | 1 cut(s) | 2436 |
| AsiGI | ACCGGT | 1 cut(s) | 817 |
| AsiSI | GCGATCGC | 1 cut(s) | 976 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2390 |
| AsuC2I | CCSGG | 5 cut(s) | 1425, 1443, 1950, 2133, 2992 |
| AsuNHI | GCTAGC | 1 cut(s) | 1930 |
| AvaI | CYCGRG | 1 cut(s) | 3076 |
| AvaII | GGWCC | 8 cut(s) | 820, 1594, 1819, 2356, 2373, 2479, 2583, 2995 |
| AxyI | CCTNAGG | 1 cut(s) | 1896 |
| BaeGI | GKGCMC | 4 cut(s) | 88, 274, 300, 1158 |
| BamHI | GGATCC | 1 cut(s) | 2899 |
| BanI | GGYRCC | 3 cut(s) | 83, 269, 2039 |
| BanII | GRGCYC | 4 cut(s) | 564, 1158, 2289, 2341 |
| BauI | CACGAG | 1 cut(s) | 1991 |
| BbrPI | CACGTG | 1 cut(s) | 422 |
| BbsI | GAAGAC | 3 cut(s) | 407, 2414, 2954 |
| Bbv12I | GWGCWC | 1 cut(s) | 678 |
| BceAI | ACGGC | 5 cut(s) | 289, 808, 981, 1217, 2162 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 72, 1298, 1332, 1792, 1826 |
| BciVI | GTATCC | 1 cut(s) | 1247 |
| BcnI | CCSGG | 5 cut(s) | 1425, 1443, 1950, 2133, 2992 |
| BcoDI | GTCTC | 8 cut(s) | 101, 246, 1644, 2526, 2547, 2691, 2910, 3055 |
| BcuI | ACTAGT | 1 cut(s) | 755 |
| BfaI | CTAG | 9 cut(s) | 155, 249, 756, 1922, 1931, 2654, 2666, 2696, 2748 |
| BfmI | CTRYAG | 3 cut(s) | 202, 796, 2414 |
| BfoI | RGCGCY | 6 cut(s) | 167, 630, 960, 1765, 1937, 2043 |
| BfuAI | ACCTGC | 2 cut(s) | 371, 1825 |
| BfuI | GTATCC | 1 cut(s) | 1247 |
| BglII | AGATCT | 1 cut(s) | 358 |
| BmcAI | AGTACT | 3 cut(s) | 760, 2034, 2869 |
| Bme18I | GGWCC | 8 cut(s) | 820, 1594, 1819, 2356, 2373, 2479, 2583, 2995 |
| BmeT110I | CYCGRG | 1 cut(s) | 3076 |
| BmgBI | CACGTC | 2 cut(s) | 148, 1810 |
| BmrI | ACTGGG | 1 cut(s) | 1823 |
| BmsI | GCATC | 6 cut(s) | 87, 879, 1108, 1378, 1808, 2336 |
| BmtI | GCTAGC | 1 cut(s) | 1934 |
| BmuI | ACTGGG | 1 cut(s) | 1823 |
| BpiI | GAAGAC | 3 cut(s) | 407, 2414, 2954 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3035, 3067, 3052, 3084 |
| BpmI | CTGGAG | 4 cut(s) | 1312, 1452, 3045, 3079 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1218, 2205, 2700 |
| BpuEI | CTTGAG | 2 cut(s) | 1947, 2654 |
| BpuMI | CCSGG | 5 cut(s) | 1425, 1443, 1950, 2133, 2992 |
| Bsa29I | ATCGAT | 4 cut(s) | 27, 399, 552, 1639 |
| BsaAI | YACGTR | 1 cut(s) | 422 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 2123 |
| BsaHI | GRCGYC | 3 cut(s) | 189, 1230, 2040 |
| BsaI | GGTCTC | 1 cut(s) | 3055 |
| BsaWI | WCCGGW | 3 cut(s) | 817, 1484, 3129 |
| Bse118I | RCCGGY | 3 cut(s) | 817, 1174, 2060 |
| Bse1I | ACTGG | 7 cut(s) | 305, 1200, 1480, 1658, 1829, 2226, 3090 |
| Bse21I | CCTNAGG | 1 cut(s) | 1896 |
| Bse3DI | GCAATG | 1 cut(s) | 2776 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 2123 |
| BseAI | TCCGGA | 1 cut(s) | 1484 |
| BseCI | ATCGAT | 4 cut(s) | 27, 399, 552, 1639 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 2123 |
| BseMI | GCAATG | 1 cut(s) | 2776 |
| BseMII | CTCAG | 6 cut(s) | 1236, 1467, 1887, 2196, 2373, 2714 |
| BseNI | ACTGG | 7 cut(s) | 305, 1200, 1480, 1658, 1829, 2226, 3090 |
| BsePI | GCGCGC | 2 cut(s) | 978, 980 |
| BseRI | GAGGAG | 4 cut(s) | 116, 829, 834, 1398 |
| BseSI | GKGCMC | 4 cut(s) | 88, 274, 300, 1158 |
| BseX3I | CGGCCG | 3 cut(s) | 183, 1724, 2001 |
| BsgI | GTGCAG | 4 cut(s) | 718, 1377, 1853, 1956 |
| Bsh1285I | CGRYCG | 6 cut(s) | 186, 976, 1727, 2004, 2019, 2056 |
| BshNI | GGYRCC | 3 cut(s) | 83, 269, 2039 |
| BshTI | ACCGGT | 1 cut(s) | 817 |
| BshVI | ATCGAT | 4 cut(s) | 27, 399, 552, 1639 |
| BsiEI | CGRYCG | 6 cut(s) | 186, 976, 1727, 2004, 2019, 2056 |
| BsiHKAI | GWGCWC | 1 cut(s) | 678 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3076 |
| BslFI | GGGAC | 4 cut(s) | 1255, 1805, 2289, 2569 |
| BsmAI | GTCTC | 8 cut(s) | 101, 246, 1644, 2526, 2547, 2691, 2910, 3055 |
| BsmBI | CGTCTC | 2 cut(s) | 101, 2910 |
| BsmFI | GGGAC | 4 cut(s) | 1255, 1805, 2289, 2569 |
| BsmI | GAATGC | 4 cut(s) | 90, 863, 1690, 2828 |
| Bso31I | GGTCTC | 1 cut(s) | 3055 |
| BsoBI | CYCGRG | 1 cut(s) | 3076 |
| Bsp120I | GGGCCC | 1 cut(s) | 1154 |
| Bsp1286I | GDGCHC | 8 cut(s) | 88, 274, 300, 564, 678, 1158, 2289, 2341 |
| Bsp13I | TCCGGA | 1 cut(s) | 1484 |
| Bsp19I | CCATGG | 3 cut(s) | 606, 1610, 1766 |
| BspCNI | CTCAG | 6 cut(s) | 1237, 1466, 1888, 2197, 2374, 2713 |
| BspDI | ATCGAT | 4 cut(s) | 27, 399, 552, 1639 |
| BspEI | TCCGGA | 1 cut(s) | 1484 |
| BspHI | TCATGA | 1 cut(s) | 2164 |
| BspMAI | CTGCAG | 2 cut(s) | 800, 2418 |
| BspMI | ACCTGC | 2 cut(s) | 371, 1825 |
| BspOI | GCTAGC | 1 cut(s) | 1934 |
| BspPI | GGATC | 3 cut(s) | 1031, 2894, 2907 |
| BspT107I | GGYRCC | 3 cut(s) | 83, 269, 2039 |
| BspTNI | GGTCTC | 1 cut(s) | 3055 |
| BsrBI | CCGCTC | 5 cut(s) | 215, 442, 2144, 2371, 2447 |
| BsrDI | GCAATG | 1 cut(s) | 2776 |
| BsrFI | RCCGGY | 3 cut(s) | 817, 1174, 2060 |
| BsrI | ACTGG | 7 cut(s) | 305, 1200, 1480, 1658, 1829, 2226, 3090 |
| BssAI | RCCGGY | 3 cut(s) | 817, 1174, 2060 |
| BssHII | GCGCGC | 2 cut(s) | 978, 980 |
| BssNI | GRCGYC | 3 cut(s) | 189, 1230, 2040 |
| BssSI | CACGAG | 1 cut(s) | 1991 |
| BssT1I | CCWWGG | 4 cut(s) | 606, 1569, 1610, 1766 |
| Bst2BI | CACGAG | 1 cut(s) | 1991 |
| Bst4CI | ACNGT | 5 cut(s) | 635, 651, 668, 1501, 1558 |
| Bst6I | CTCTTC | 3 cut(s) | 774, 2913, 3128 |
| BstACI | GRCGYC | 3 cut(s) | 189, 1230, 2040 |
| BstBAI | YACGTR | 1 cut(s) | 422 |
| BstDEI | CTNAG | 8 cut(s) | 1040, 1218, 1245, 1453, 1896, 2205, 2382, 2700 |
| BstDSI | CCRYGG | 6 cut(s) | 606, 647, 1233, 1610, 1766, 2978 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2699 |
| BstH2I | RGCGCY | 6 cut(s) | 167, 630, 960, 1765, 1937, 2043 |
| BstMAI | GTCTC | 8 cut(s) | 101, 246, 1644, 2526, 2547, 2691, 2910, 3055 |
| BstMCI | CGRYCG | 6 cut(s) | 186, 976, 1727, 2004, 2019, 2056 |
| BstNSI | RCATGY | 1 cut(s) | 1189 |
| BstSFI | CTRYAG | 3 cut(s) | 202, 796, 2414 |
| BstSLI | GKGCMC | 4 cut(s) | 88, 274, 300, 1158 |
| BstV2I | GAAGAC | 3 cut(s) | 407, 2414, 2954 |
| BstX2I | RGATCY | 3 cut(s) | 358, 1023, 2899 |
| BstYI | RGATCY | 3 cut(s) | 358, 1023, 2899 |
| BstZI | CGGCCG | 3 cut(s) | 183, 1724, 2001 |
| Bsu15I | ATCGAT | 4 cut(s) | 27, 399, 552, 1639 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1896 |
| BsuI | GTATCC | 1 cut(s) | 1247 |
| BsuTUI | ATCGAT | 4 cut(s) | 27, 399, 552, 1639 |
| BtgI | CCRYGG | 6 cut(s) | 606, 647, 1233, 1610, 1766, 2978 |
| BtgZI | GCGATG | 1 cut(s) | 178 |
| BtrI | CACGTC | 2 cut(s) | 148, 1810 |
| BtsI | GCAGTG | 2 cut(s) | 805, 2198 |
| BtsIMutI | CAGTG | 9 cut(s) | 298, 640, 805, 1193, 1473, 1602, 1836, 2198, 2379 |
| BveI | ACCTGC | 2 cut(s) | 371, 1825 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1475 |
| CciI | TCATGA | 1 cut(s) | 2164 |
| Cfr10I | RCCGGY | 3 cut(s) | 817, 1174, 2060 |
| Cfr42I | CCGCGG | 1 cut(s) | 2981 |
| ClaI | ATCGAT | 4 cut(s) | 27, 399, 552, 1639 |
| CpoI | CGGWCCG | 1 cut(s) | 820 |
| CseI | GACGC | 2 cut(s) | 197, 1238 |
| Csp6I | GTAC | 9 cut(s) | 759, 835, 874, 1114, 1646, 2033, 2240, 2868, 3133 |
| CspAI | ACCGGT | 1 cut(s) | 817 |
| CspI | CGGWCCG | 1 cut(s) | 820 |
| CviAII | CATG | 9 cut(s) | 572, 607, 617, 1186, 1611, 1767, 2096, 2165, 2174 |
| CviQI | GTAC | 9 cut(s) | 759, 835, 874, 1114, 1646, 2033, 2240, 2868, 3133 |
| DdeI | CTNAG | 8 cut(s) | 1040, 1218, 1245, 1453, 1896, 2205, 2382, 2700 |
| DinI | GGCGCC | 1 cut(s) | 2041 |
| DraIII | CACNNNGTG | 1 cut(s) | 425 |
| EaeI | YGGCCR | 5 cut(s) | 183, 302, 1320, 1724, 2001 |
| EagI | CGGCCG | 3 cut(s) | 183, 1724, 2001 |
| Eam1104I | CTCTTC | 3 cut(s) | 774, 2913, 3128 |
| EarI | CTCTTC | 3 cut(s) | 774, 2913, 3128 |
| EciI | GGCGGA | 3 cut(s) | 983, 2320, 2959 |
| EclXI | CGGCCG | 3 cut(s) | 183, 1724, 2001 |
| Eco130I | CCWWGG | 4 cut(s) | 606, 1569, 1610, 1766 |
| Eco24I | GRGCYC | 4 cut(s) | 564, 1158, 2289, 2341 |
| Eco31I | GGTCTC | 1 cut(s) | 3055 |
| Eco47I | GGWCC | 8 cut(s) | 820, 1594, 1819, 2356, 2373, 2479, 2583, 2995 |
| Eco47III | AGCGCT | 1 cut(s) | 628 |
| Eco52I | CGGCCG | 3 cut(s) | 183, 1724, 2001 |
| Eco57I | CTGAAG | 2 cut(s) | 1404, 2124 |
| Eco72I | CACGTG | 1 cut(s) | 422 |
| Eco81I | CCTNAGG | 1 cut(s) | 1896 |
| Eco88I | CYCGRG | 1 cut(s) | 3076 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2699 |
| EcoO109I | RGGNCCY | 4 cut(s) | 117, 1155, 2356, 2491 |
| EcoT14I | CCWWGG | 4 cut(s) | 606, 1569, 1610, 1766 |
| EcoT38I | GRGCYC | 4 cut(s) | 564, 1158, 2289, 2341 |
| EgeI | GGCGCC | 1 cut(s) | 2041 |
| EheI | GGCGCC | 1 cut(s) | 2041 |
| ErhI | CCWWGG | 4 cut(s) | 606, 1569, 1610, 1766 |
| Esp3I | CGTCTC | 2 cut(s) | 101, 2910 |
| FaeI | CATG | 9 cut(s) | 575, 610, 620, 1189, 1614, 1770, 2099, 2168, 2177 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 27, 59 |
| FaqI | GGGAC | 4 cut(s) | 1255, 1805, 2289, 2569 |
| FatI | CATG | 9 cut(s) | 571, 606, 616, 1185, 1610, 1766, 2095, 2164, 2173 |
| FauI | CCCGC | 5 cut(s) | 95, 220, 1293, 1583, 2791 |
| FblI | GTMKAC | 1 cut(s) | 2984 |
| FriOI | GRGCYC | 4 cut(s) | 564, 1158, 2289, 2341 |
| FspBI | CTAG | 9 cut(s) | 155, 249, 756, 1922, 1931, 2654, 2666, 2696, 2748 |
| FspI | TGCGCA | 1 cut(s) | 2460 |
| GsuI | CTGGAG | 4 cut(s) | 1312, 1452, 3045, 3079 |
| HaeII | RGCGCY | 6 cut(s) | 167, 630, 960, 1765, 1937, 2043 |
| HgaI | GACGC | 2 cut(s) | 197, 1238 |
| Hin1I | GRCGYC | 3 cut(s) | 189, 1230, 2040 |
| Hin1II | CATG | 9 cut(s) | 575, 610, 620, 1189, 1614, 1770, 2099, 2168, 2177 |
| Hpy166II | GTNNAC | 4 cut(s) | 2077, 2394, 2482, 2985 |
| Hpy8I | GTNNAC | 4 cut(s) | 2077, 2394, 2482, 2985 |
| Hpy99I | CGWCG | 6 cut(s) | 152, 191, 222, 781, 1725, 1811 |
| HpyCH4III | ACNGT | 5 cut(s) | 635, 651, 668, 1501, 1558 |
| HpyCH4IV | ACGT | 4 cut(s) | 147, 421, 1809, 2293 |
| HpyF3I | CTNAG | 8 cut(s) | 1040, 1218, 1245, 1453, 1896, 2205, 2382, 2700 |
| HpySE526I | ACGT | 4 cut(s) | 147, 421, 1809, 2293 |
| Hsp92I | GRCGYC | 3 cut(s) | 189, 1230, 2040 |
| Hsp92II | CATG | 9 cut(s) | 575, 610, 620, 1189, 1614, 1770, 2099, 2168, 2177 |
| KasI | GGCGCC | 1 cut(s) | 2039 |
| Kpn2I | TCCGGA | 1 cut(s) | 1484 |
| KroI | GCCGGC | 1 cut(s) | 1174 |
| KroNI | GCCGGC | 1 cut(s) | 1176 |
| KspI | CCGCGG | 1 cut(s) | 2981 |
| LweI | GCATC | 6 cut(s) | 87, 879, 1108, 1378, 1808, 2336 |
| MaeI | CTAG | 9 cut(s) | 155, 249, 756, 1922, 1931, 2654, 2666, 2696, 2748 |
| MaeII | ACGT | 4 cut(s) | 147, 421, 1809, 2293 |
| MaeIII | GTNAC | 3 cut(s) | 589, 2620, 3085 |
| MauBI | CGCGCGCG | 1 cut(s) | 978 |
| MbiI | CCGCTC | 5 cut(s) | 215, 442, 2144, 2371, 2447 |
| MfeI | CAATTG | 3 cut(s) | 1285, 1814, 2609 |
| MflI | RGATCY | 3 cut(s) | 358, 1023, 2899 |
| MhlI | GDGCHC | 8 cut(s) | 88, 274, 300, 564, 678, 1158, 2289, 2341 |
| MluI | ACGCGT | 1 cut(s) | 2793 |
| Mly113I | GGCGCC | 1 cut(s) | 2040 |
| MlyI | GAGTC | 7 cut(s) | 167, 238, 760, 1303, 2311, 2428, 3053 |
| MmeI | TCCRAC | 3 cut(s) | 1560, 2314, 3022 |
| MroI | TCCGGA | 1 cut(s) | 1484 |
| MroNI | GCCGGC | 1 cut(s) | 1174 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2390 |
| MseI | TTAA | 2 cut(s) | 45, 2436 |
| MspA1I | CMGCKG | 5 cut(s) | 690, 1300, 1565, 1729, 2980 |
| MunI | CAATTG | 3 cut(s) | 1285, 1814, 2609 |
| Mva1269I | GAATGC | 4 cut(s) | 90, 863, 1690, 2828 |
| NaeI | GCCGGC | 1 cut(s) | 1176 |
| NarI | GGCGCC | 1 cut(s) | 2040 |
| NciI | CCSGG | 5 cut(s) | 1425, 1443, 1950, 2133, 2992 |
| NcoI | CCATGG | 3 cut(s) | 606, 1610, 1766 |
| NgoMIV | GCCGGC | 1 cut(s) | 1174 |
| NheI | GCTAGC | 1 cut(s) | 1930 |
| NlaIII | CATG | 9 cut(s) | 575, 610, 620, 1189, 1614, 1770, 2099, 2168, 2177 |
| NmuCI | GTSAC | 2 cut(s) | 589, 3085 |
| NsbI | TGCGCA | 1 cut(s) | 2460 |
| NspI | RCATGY | 1 cut(s) | 1189 |
| PaeI | GCATGC | 1 cut(s) | 1189 |
| PagI | TCATGA | 1 cut(s) | 2164 |
| PauI | GCGCGC | 2 cut(s) | 978, 980 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 418, 1456, 1645, 2394 |
| PctI | GAATGC | 4 cut(s) | 90, 863, 1690, 2828 |
| PdiI | GCCGGC | 1 cut(s) | 1176 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2390 |
| PfeI | GAWTC | 6 cut(s) | 277, 921, 945, 1149, 1526, 1771 |
| PflFI | GACNNNGTC | 1 cut(s) | 587 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 425, 1475, 1792 |
| PinAI | ACCGGT | 1 cut(s) | 817 |
| Ple19I | CGATCG | 1 cut(s) | 976 |
| PleI | GAGTC | 7 cut(s) | 167, 238, 760, 1302, 2310, 2427, 3052 |
| PluTI | GGCGCC | 1 cut(s) | 2043 |
| PmaCI | CACGTG | 1 cut(s) | 422 |
| PmlI | CACGTG | 1 cut(s) | 422 |
| PpsI | GAGTC | 7 cut(s) | 167, 238, 760, 1302, 2310, 2427, 3052 |
| Ppu21I | YACGTR | 1 cut(s) | 422 |
| PpuMI | RGGWCCY | 1 cut(s) | 2356 |
| PshBI | ATTAAT | 1 cut(s) | 2436 |
| Psp5II | RGGWCCY | 1 cut(s) | 2356 |
| PspCI | CACGTG | 1 cut(s) | 422 |
| PspOMI | GGGCCC | 1 cut(s) | 1154 |
| PspPPI | RGGWCCY | 1 cut(s) | 2356 |
| PstI | CTGCAG | 2 cut(s) | 800, 2418 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1475 |
| PsuI | RGATCY | 3 cut(s) | 358, 1023, 2899 |
| PsyI | GACNNNGTC | 1 cut(s) | 587 |
| PteI | GCGCGC | 2 cut(s) | 978, 980 |
| PvuI | CGATCG | 1 cut(s) | 976 |
| RgaI | GCGATCGC | 1 cut(s) | 976 |
| RsaI | GTAC | 9 cut(s) | 760, 836, 875, 1115, 1647, 2034, 2241, 2869, 3134 |
| RsaNI | GTAC | 9 cut(s) | 759, 835, 874, 1114, 1646, 2033, 2240, 2868, 3133 |
| Rsr2I | CGGWCCG | 1 cut(s) | 820 |
| RsrII | CGGWCCG | 1 cut(s) | 820 |
| SacII | CCGCGG | 1 cut(s) | 2981 |
| SaqAI | TTAA | 2 cut(s) | 45, 2436 |
| ScaI | AGTACT | 3 cut(s) | 760, 2034, 2869 |
| SchI | GAGTC | 7 cut(s) | 167, 238, 760, 1303, 2311, 2428, 3053 |
| SduI | GDGCHC | 8 cut(s) | 88, 274, 300, 564, 678, 1158, 2289, 2341 |
| SfaAI | GCGATCGC | 1 cut(s) | 976 |
| SfaNI | GCATC | 6 cut(s) | 87, 879, 1108, 1378, 1808, 2336 |
| SfcI | CTRYAG | 3 cut(s) | 202, 796, 2414 |
| SfoI | GGCGCC | 1 cut(s) | 2041 |
| Sfr303I | CCGCGG | 1 cut(s) | 2981 |
| SgfI | GCGATCGC | 1 cut(s) | 976 |
| SgrBI | CCGCGG | 1 cut(s) | 2981 |
| SinI | GGWCC | 8 cut(s) | 820, 1594, 1819, 2356, 2373, 2479, 2583, 2995 |
| SmlI | CTYRAG | 2 cut(s) | 1962, 2633 |
| SmoI | CTYRAG | 2 cut(s) | 1962, 2633 |
| SpeI | ACTAGT | 1 cut(s) | 755 |
| SphI | GCATGC | 1 cut(s) | 1189 |
| SspDI | GGCGCC | 1 cut(s) | 2039 |
| SspI | AATATT | 1 cut(s) | 526 |
| SspMI | CTAG | 9 cut(s) | 155, 249, 756, 1922, 1931, 2654, 2666, 2696, 2748 |
| StyI | CCWWGG | 4 cut(s) | 606, 1569, 1610, 1766 |
| TaaI | ACNGT | 5 cut(s) | 635, 651, 668, 1501, 1558 |
| TaiI | ACGT | 4 cut(s) | 150, 424, 1812, 2296 |
| TaqII | GACCGA | 2 cut(s) | 2070, 2571 |
| TatI | WGTACW | 3 cut(s) | 758, 2032, 2867 |
| TfiI | GAWTC | 6 cut(s) | 277, 921, 945, 1149, 1526, 1771 |
| Tru1I | TTAA | 2 cut(s) | 45, 2436 |
| Tru9I | TTAA | 2 cut(s) | 45, 2436 |
| TscAI | CASTG | 9 cut(s) | 305, 640, 805, 1200, 1480, 1609, 1836, 2205, 2386 |
| TseFI | GTSAC | 2 cut(s) | 589, 3085 |
| Tsp45I | GTSAC | 2 cut(s) | 589, 3085 |
| TspDTI | ATGAA | 7 cut(s) | 715, 1638, 2135, 2181, 2454, 2765, 2800 |
| TspGWI | ACGGA | 3 cut(s) | 364, 1448, 2892 |
| TspRI | CASTG | 9 cut(s) | 305, 640, 805, 1200, 1480, 1609, 1836, 2205, 2386 |
| Tth111I | GACNNNGTC | 1 cut(s) | 587 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 425, 1475, 1792 |
| VpaK11BI | GGWCC | 8 cut(s) | 820, 1594, 1819, 2356, 2373, 2479, 2583, 2995 |
| VspI | ATTAAT | 1 cut(s) | 2436 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2699 |
| XapI | RAATTY | 2 cut(s) | 722, 1275 |
| XceI | RCATGY | 1 cut(s) | 1189 |
| XmiI | GTMKAC | 1 cut(s) | 2984 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2390 |
| XspI | CTAG | 9 cut(s) | 155, 249, 756, 1922, 1931, 2654, 2666, 2696, 2748 |
| ZrmI | AGTACT | 3 cut(s) | 760, 2034, 2869 |