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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 4 cut(s) | 175, 213, 397, 493 |
| AccIII | TCCGGA | 1 cut(s) | 107 |
| AcoI | YGGCCR | 2 cut(s) | 463, 473 |
| AcsI | RAATTY | 1 cut(s) | 236 |
| AfeI | AGCGCT | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 169, 502 |
| AgsI | TTSAA | 1 cut(s) | 140 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 561 |
| AluBI | AGCT | 2 cut(s) | 25, 84 |
| AluI | AGCT | 2 cut(s) | 25, 84 |
| Alw21I | GWGCWC | 1 cut(s) | 219 |
| Alw26I | GTCTC | 2 cut(s) | 298, 337 |
| Ama87I | CYCGRG | 3 cut(s) | 85, 93, 284 |
| Aor13HI | TCCGGA | 1 cut(s) | 107 |
| Aor51HI | AGCGCT | 1 cut(s) | 91 |
| AoxI | GGCC | 3 cut(s) | 299, 463, 473 |
| ApoI | RAATTY | 1 cut(s) | 236 |
| AspA2I | CCTAGG | 1 cut(s) | 257 |
| AspLEI | GCGC | 4 cut(s) | 92, 175, 388, 495 |
| AspS9I | GGNCC | 1 cut(s) | 506 |
| AsuC2I | CCSGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| AvaI | CYCGRG | 3 cut(s) | 85, 93, 284 |
| AvaII | GGWCC | 1 cut(s) | 506 |
| AvrII | CCTAGG | 1 cut(s) | 257 |
| BauI | CACGAG | 1 cut(s) | 308 |
| BbsI | GAAGAC | 1 cut(s) | 576 |
| Bbv12I | GWGCWC | 1 cut(s) | 219 |
| BccI | CCATC | 3 cut(s) | 43, 443, 521 |
| BceAI | ACGGC | 1 cut(s) | 158 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 362, 396 |
| BcnI | CCSGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| BcoDI | GTCTC | 2 cut(s) | 298, 337 |
| BfaI | CTAG | 2 cut(s) | 68, 258 |
| BfoI | RGCGCY | 2 cut(s) | 93, 389 |
| BisI | GCNGC | 9 cut(s) | 126, 211, 319, 384, 398, 460, 463, 466, 473 |
| BlnI | CCTAGG | 1 cut(s) | 257 |
| BlsI | GCNGC | 9 cut(s) | 127, 212, 320, 385, 399, 461, 464, 467, 474 |
| Bme1390I | CCNGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| Bme18I | GGWCC | 1 cut(s) | 506 |
| BmeT110I | CYCGRG | 3 cut(s) | 85, 93, 284 |
| BmgT120I | GGNCC | 1 cut(s) | 506 |
| BmiI | GGNNCC | 3 cut(s) | 14, 361, 507 |
| BmrFI | CCNGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| BmsI | GCATC | 2 cut(s) | 112, 397 |
| BpiI | GAAGAC | 1 cut(s) | 576 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 545, 577 |
| BpuEI | CTTGAG | 1 cut(s) | 5 |
| BpuMI | CCSGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| BsaI | GGTCTC | 2 cut(s) | 298, 337 |
| BsaJI | CCNNGG | 4 cut(s) | 228, 257, 284, 532 |
| BsaWI | WCCGGW | 3 cut(s) | 107, 356, 403 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 169, 502 |
| BseAI | TCCGGA | 1 cut(s) | 107 |
| BseDI | CCNNGG | 4 cut(s) | 228, 257, 284, 532 |
| BseGI | GGATG | 2 cut(s) | 124, 412 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 169, 502 |
| BseRI | GAGGAG | 3 cut(s) | 8, 94, 414 |
| BseX3I | CGGCCG | 2 cut(s) | 463, 473 |
| Bsh1236I | CGCG | 4 cut(s) | 175, 213, 397, 493 |
| Bsh1285I | CGRYCG | 3 cut(s) | 182, 466, 476 |
| BshFI | GGCC | 3 cut(s) | 301, 465, 475 |
| BsiEI | CGRYCG | 3 cut(s) | 182, 466, 476 |
| BsiHKAI | GWGCWC | 1 cut(s) | 219 |
| BsiHKCI | CYCGRG | 3 cut(s) | 85, 93, 284 |
| BsiSI | CCGG | 7 cut(s) | 108, 170, 285, 357, 404, 503, 534 |
| BslFI | GGGAC | 1 cut(s) | 138 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 169, 502 |
| BsmAI | GTCTC | 2 cut(s) | 298, 337 |
| BsmFI | GGGAC | 1 cut(s) | 138 |
| BsnI | GGCC | 3 cut(s) | 301, 465, 475 |
| Bso31I | GGTCTC | 2 cut(s) | 298, 337 |
| BsoBI | CYCGRG | 3 cut(s) | 85, 93, 284 |
| Bsp1286I | GDGCHC | 1 cut(s) | 219 |
| Bsp13I | TCCGGA | 1 cut(s) | 107 |
| BspANI | GGCC | 3 cut(s) | 301, 465, 475 |
| BspEI | TCCGGA | 1 cut(s) | 107 |
| BspFNI | CGCG | 4 cut(s) | 175, 213, 397, 493 |
| BspLI | GGNNCC | 3 cut(s) | 14, 361, 507 |
| BspTNI | GGTCTC | 2 cut(s) | 298, 337 |
| BssECI | CCNNGG | 4 cut(s) | 228, 257, 284, 532 |
| BssSI | CACGAG | 1 cut(s) | 308 |
| BssT1I | CCWWGG | 1 cut(s) | 257 |
| Bst2BI | CACGAG | 1 cut(s) | 308 |
| BstC8I | GCNNGC | 3 cut(s) | 215, 219, 470 |
| BstF5I | GGATG | 2 cut(s) | 124, 412 |
| BstFNI | CGCG | 4 cut(s) | 175, 213, 397, 493 |
| BstH2I | RGCGCY | 2 cut(s) | 93, 389 |
| BstHHI | GCGC | 4 cut(s) | 92, 175, 388, 495 |
| BstMAI | GTCTC | 2 cut(s) | 298, 337 |
| BstMCI | CGRYCG | 3 cut(s) | 182, 466, 476 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 31, 394, 435, 465 |
| BstNSI | RCATGY | 2 cut(s) | 325, 383 |
| BstSCI | CCNGG | 5 cut(s) | 168, 283, 284, 502, 532 |
| BstUI | CGCG | 4 cut(s) | 175, 213, 397, 493 |
| BstV2I | GAAGAC | 1 cut(s) | 576 |
| BstZI | CGGCCG | 2 cut(s) | 463, 473 |
| BsuRI | GGCC | 3 cut(s) | 301, 465, 475 |
| BtgZI | GCGATG | 1 cut(s) | 21 |
| BtsCI | GGATG | 2 cut(s) | 124, 412 |
| BtsI | GCAGTG | 1 cut(s) | 29 |
| BtsIMutI | CAGTG | 1 cut(s) | 29 |
| Cac8I | GCNNGC | 3 cut(s) | 215, 219, 470 |
| CciNI | GCGGCCGC | 1 cut(s) | 463 |
| CfoI | GCGC | 4 cut(s) | 92, 175, 388, 495 |
| Cfr13I | GGNCC | 1 cut(s) | 506 |
| Cfr9I | CCCGGG | 1 cut(s) | 284 |
| CseI | GACGC | 1 cut(s) | 164 |
| CviAII | CATG | 4 cut(s) | 297, 322, 380, 439 |
| EaeI | YGGCCR | 2 cut(s) | 463, 473 |
| EagI | CGGCCG | 2 cut(s) | 463, 473 |
| EclXI | CGGCCG | 2 cut(s) | 463, 473 |
| Eco130I | CCWWGG | 1 cut(s) | 257 |
| Eco31I | GGTCTC | 2 cut(s) | 298, 337 |
| Eco32I | GATATC | 1 cut(s) | 160 |
| Eco47I | GGWCC | 1 cut(s) | 506 |
| Eco47III | AGCGCT | 1 cut(s) | 91 |
| Eco52I | CGGCCG | 2 cut(s) | 463, 473 |
| Eco88I | CYCGRG | 3 cut(s) | 85, 93, 284 |
| EcoRI | GAATTC | 1 cut(s) | 236 |
| EcoRV | GATATC | 1 cut(s) | 160 |
| EcoT14I | CCWWGG | 1 cut(s) | 257 |
| ErhI | CCWWGG | 1 cut(s) | 257 |
| FaeI | CATG | 4 cut(s) | 300, 325, 383, 442 |
| FaiI | YATR | 6 cut(s) | 267, 298, 323, 369, 381, 440 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 561 |
| FaqI | GGGAC | 1 cut(s) | 138 |
| FatI | CATG | 4 cut(s) | 296, 321, 379, 438 |
| Fnu4HI | GCNGC | 9 cut(s) | 126, 211, 319, 384, 398, 460, 463, 466, 473 |
| FokI | GGATG | 2 cut(s) | 131, 419 |
| Fsp4HI | GCNGC | 9 cut(s) | 126, 211, 319, 384, 398, 460, 463, 466, 473 |
| FspBI | CTAG | 2 cut(s) | 68, 258 |
| GlaI | GCGC | 4 cut(s) | 91, 174, 387, 494 |
| GluI | GCNGC | 9 cut(s) | 126, 211, 319, 384, 398, 460, 463, 466, 473 |
| HaeII | RGCGCY | 2 cut(s) | 93, 389 |
| HaeIII | GGCC | 3 cut(s) | 301, 465, 475 |
| HapII | CCGG | 7 cut(s) | 108, 170, 285, 357, 404, 503, 534 |
| HgaI | GACGC | 1 cut(s) | 164 |
| HhaI | GCGC | 4 cut(s) | 92, 175, 388, 495 |
| Hin1II | CATG | 4 cut(s) | 300, 325, 383, 442 |
| Hin6I | GCGC | 4 cut(s) | 90, 173, 386, 493 |
| HinP1I | GCGC | 4 cut(s) | 90, 173, 386, 493 |
| HinfI | GANTC | 3 cut(s) | 151, 415, 554 |
| HpaII | CCGG | 7 cut(s) | 108, 170, 285, 357, 404, 503, 534 |
| Hpy188I | TCNGA | 4 cut(s) | 190, 337, 344, 510 |
| Hpy188III | TCNNGA | 3 cut(s) | 108, 155, 566 |
| Hpy99I | CGWCG | 1 cut(s) | 180 |
| HpyAV | CCTTC | 1 cut(s) | 283 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 31, 394, 435, 465 |
| Hsp92II | CATG | 4 cut(s) | 300, 325, 383, 442 |
| HspAI | GCGC | 4 cut(s) | 90, 173, 386, 493 |
| Kpn2I | TCCGGA | 1 cut(s) | 107 |
| LmnI | GCTCC | 4 cut(s) | 12, 30, 393, 442 |
| LpnPI | CCDG | 8 cut(s) | 94, 121, 183, 298, 370, 417, 516, 547 |
| LweI | GCATC | 2 cut(s) | 112, 397 |
| MaeI | CTAG | 2 cut(s) | 68, 258 |
| MaeIII | GTNAC | 1 cut(s) | 98 |
| MboII | GAAGA | 4 cut(s) | 197, 386, 476, 581 |
| MhlI | GDGCHC | 1 cut(s) | 219 |
| MluCI | AATT | 2 cut(s) | 236, 364 |
| MlyI | GAGTC | 2 cut(s) | 160, 563 |
| MmeI | TCCRAC | 1 cut(s) | 533 |
| MroI | TCCGGA | 1 cut(s) | 107 |
| MseI | TTAA | 2 cut(s) | 197, 272 |
| MspI | CCGG | 7 cut(s) | 108, 170, 285, 357, 404, 503, 534 |
| MspR9I | CCNGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| MvnI | CGCG | 4 cut(s) | 175, 213, 397, 493 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 31, 394, 435, 465 |
| NciI | CCSGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| NlaIII | CATG | 4 cut(s) | 300, 325, 383, 442 |
| NlaIV | GGNNCC | 3 cut(s) | 14, 361, 507 |
| NmeAIII | GCCGAG | 2 cut(s) | 268, 501 |
| NotI | GCGGCCGC | 1 cut(s) | 463 |
| NspI | RCATGY | 2 cut(s) | 325, 383 |
| PaeR7I | CTCGAG | 2 cut(s) | 85, 93 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 225, 240 |
| PfeI | GAWTC | 1 cut(s) | 415 |
| PkrI | GCNGC | 9 cut(s) | 127, 212, 320, 385, 399, 461, 464, 467, 474 |
| PleI | GAGTC | 2 cut(s) | 159, 562 |
| PpsI | GAGTC | 2 cut(s) | 159, 562 |
| PspN4I | GGNNCC | 3 cut(s) | 14, 361, 507 |
| PspPI | GGNCC | 1 cut(s) | 506 |
| PspXI | VCTCGAGB | 2 cut(s) | 85, 93 |
| SaqAI | TTAA | 2 cut(s) | 197, 272 |
| SatI | GCNGC | 9 cut(s) | 126, 211, 319, 384, 398, 460, 463, 466, 473 |
| Sau96I | GGNCC | 1 cut(s) | 506 |
| SchI | GAGTC | 2 cut(s) | 160, 563 |
| ScrFI | CCNGG | 5 cut(s) | 170, 285, 286, 504, 534 |
| SduI | GDGCHC | 1 cut(s) | 219 |
| SetI | ASST | 8 cut(s) | 27, 54, 86, 100, 263, 294, 502, 541 |
| SfaNI | GCATC | 2 cut(s) | 112, 397 |
| Sfr274I | CTCGAG | 2 cut(s) | 85, 93 |
| SinI | GGWCC | 1 cut(s) | 506 |
| SlaI | CTCGAG | 2 cut(s) | 85, 93 |
| SmaI | CCCGGG | 1 cut(s) | 286 |
| SmlI | CTYRAG | 3 cut(s) | 20, 85, 93 |
| SmoI | CTYRAG | 3 cut(s) | 20, 85, 93 |
| Sse9I | AATT | 2 cut(s) | 236, 364 |
| SspMI | CTAG | 2 cut(s) | 68, 258 |
| StyD4I | CCNGG | 5 cut(s) | 168, 283, 284, 502, 532 |
| StyI | CCWWGG | 1 cut(s) | 257 |
| TaqI | TCGA | 5 cut(s) | 86, 94, 250, 314, 516 |
| TaqII | GACCGA | 1 cut(s) | 168 |
| TasI | AATT | 2 cut(s) | 236, 364 |
| TauI | GCSGC | 9 cut(s) | 128, 213, 321, 386, 400, 462, 465, 468, 475 |
| TfiI | GAWTC | 1 cut(s) | 415 |
| Tru1I | TTAA | 2 cut(s) | 197, 272 |
| Tru9I | TTAA | 2 cut(s) | 197, 272 |
| TscAI | CASTG | 1 cut(s) | 36 |
| TspGWI | ACGGA | 2 cut(s) | 147, 152 |
| TspMI | CCCGGG | 1 cut(s) | 284 |
| TspRI | CASTG | 1 cut(s) | 36 |
| VpaK11BI | GGWCC | 1 cut(s) | 506 |
| XapI | RAATTY | 1 cut(s) | 236 |
| XceI | RCATGY | 2 cut(s) | 325, 383 |
| XhoI | CTCGAG | 2 cut(s) | 85, 93 |
| XmaI | CCCGGG | 1 cut(s) | 284 |
| XmaJI | CCTAGG | 1 cut(s) | 257 |
| XspI | CTAG | 2 cut(s) | 68, 258 |