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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 28 |
| AccII | CGCG | 3 cut(s) | 116, 138, 325 |
| AciI | CCGC | 5 cut(s) | 25, 178, 234, 287, 332 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 28, 83, 84, 105, 106 |
| AgsI | TTSAA | 2 cut(s) | 221, 254 |
| AjnI | CCWGG | 2 cut(s) | 15, 27 |
| AluBI | AGCT | 3 cut(s) | 92, 217, 352 |
| AluI | AGCT | 3 cut(s) | 92, 217, 352 |
| Alw21I | GWGCWC | 1 cut(s) | 68 |
| Alw26I | GTCTC | 2 cut(s) | 165, 309 |
| Ama87I | CYCGRG | 1 cut(s) | 82 |
| AoxI | GGCC | 7 cut(s) | 31, 74, 96, 109, 243, 288, 333 |
| ApeKI | GCWGC | 6 cut(s) | 4, 7, 158, 236, 352, 355 |
| AspLEI | GCGC | 3 cut(s) | 118, 325, 327 |
| AspS9I | GGNCC | 8 cut(s) | 19, 31, 75, 97, 109, 201, 244, 334 |
| AsuC2I | CCSGG | 2 cut(s) | 83, 84 |
| AsuII | TTCGAA | 1 cut(s) | 294 |
| AvaI | CYCGRG | 1 cut(s) | 82 |
| AvaII | GGWCC | 2 cut(s) | 19, 201 |
| Bbv12I | GWGCWC | 1 cut(s) | 68 |
| BbvI | GCAGC | 4 cut(s) | 145, 248, 339, 342 |
| BceAI | ACGGC | 1 cut(s) | 258 |
| BciT130I | CCWGG | 2 cut(s) | 17, 29 |
| BcnI | CCSGG | 2 cut(s) | 83, 84 |
| BcoDI | GTCTC | 2 cut(s) | 165, 309 |
| BfaI | CTAG | 2 cut(s) | 284, 365 |
| BisI | GCNGC | 8 cut(s) | 5, 8, 159, 237, 288, 333, 353, 356 |
| BlsI | GCNGC | 8 cut(s) | 6, 9, 160, 238, 289, 334, 354, 357 |
| Bme1390I | CCNGG | 4 cut(s) | 17, 29, 83, 84 |
| Bme18I | GGWCC | 2 cut(s) | 19, 201 |
| BmeT110I | CYCGRG | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 8 cut(s) | 19, 31, 75, 97, 109, 201, 244, 334 |
| BmiI | GGNNCC | 3 cut(s) | 77, 110, 203 |
| BmrFI | CCNGG | 4 cut(s) | 17, 29, 83, 84 |
| BmsI | GCATC | 1 cut(s) | 118 |
| Bpu10I | CCTNAGC | 2 cut(s) | 93, 318 |
| Bpu14I | TTCGAA | 1 cut(s) | 294 |
| BpuMI | CCSGG | 2 cut(s) | 83, 84 |
| BsaJI | CCNNGG | 3 cut(s) | 28, 82, 83 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 28, 83, 84, 105, 106 |
| Bse1I | ACTGG | 1 cut(s) | 50 |
| BseBI | CCWGG | 2 cut(s) | 17, 29 |
| BseDI | CCNNGG | 3 cut(s) | 28, 82, 83 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 28, 83, 84, 105, 106 |
| BseMII | CTCAG | 3 cut(s) | 107, 137, 332 |
| BseNI | ACTGG | 1 cut(s) | 50 |
| BsePI | GCGCGC | 1 cut(s) | 323 |
| BseXI | GCAGC | 4 cut(s) | 145, 248, 339, 342 |
| Bsh1236I | CGCG | 3 cut(s) | 116, 138, 325 |
| BshFI | GGCC | 7 cut(s) | 33, 76, 98, 111, 245, 290, 335 |
| BsiHKAI | GWGCWC | 1 cut(s) | 68 |
| BsiHKCI | CYCGRG | 1 cut(s) | 82 |
| BsiSI | CCGG | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 28, 83, 84, 105, 106 |
| BsmAI | GTCTC | 2 cut(s) | 165, 309 |
| BsnI | GGCC | 7 cut(s) | 33, 76, 98, 111, 245, 290, 335 |
| BsoBI | CYCGRG | 1 cut(s) | 82 |
| Bsp119I | TTCGAA | 1 cut(s) | 294 |
| Bsp1286I | GDGCHC | 1 cut(s) | 68 |
| Bsp68I | TCGCGA | 1 cut(s) | 138 |
| BspACI | CCGC | 5 cut(s) | 25, 178, 234, 287, 332 |
| BspANI | GGCC | 7 cut(s) | 33, 76, 98, 111, 245, 290, 335 |
| BspCNI | CTCAG | 3 cut(s) | 106, 138, 331 |
| BspFNI | CGCG | 3 cut(s) | 116, 138, 325 |
| BspLI | GGNNCC | 3 cut(s) | 77, 110, 203 |
| BspT104I | TTCGAA | 1 cut(s) | 294 |
| BsrI | ACTGG | 1 cut(s) | 50 |
| BssECI | CCNNGG | 3 cut(s) | 28, 82, 83 |
| BssHII | GCGCGC | 1 cut(s) | 323 |
| Bst2UI | CCWGG | 2 cut(s) | 17, 29 |
| BstBI | TTCGAA | 1 cut(s) | 294 |
| BstC8I | GCNNGC | 2 cut(s) | 90, 325 |
| BstDEI | CTNAG | 3 cut(s) | 93, 146, 318 |
| BstFNI | CGCG | 3 cut(s) | 116, 138, 325 |
| BstHHI | GCGC | 3 cut(s) | 118, 325, 327 |
| BstMAI | GTCTC | 2 cut(s) | 165, 309 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 184, 242, 296, 329, 361 |
| BstNI | CCWGG | 2 cut(s) | 17, 29 |
| BstSCI | CCNGG | 4 cut(s) | 15, 27, 81, 82 |
| BstUI | CGCG | 3 cut(s) | 116, 138, 325 |
| BstV1I | GCAGC | 4 cut(s) | 145, 248, 339, 342 |
| BsuRI | GGCC | 7 cut(s) | 33, 76, 98, 111, 245, 290, 335 |
| BtgZI | GCGATG | 1 cut(s) | 314 |
| BtuMI | TCGCGA | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 2 cut(s) | 90, 325 |
| CfoI | GCGC | 3 cut(s) | 118, 325, 327 |
| Cfr13I | GGNCC | 8 cut(s) | 19, 31, 75, 97, 109, 201, 244, 334 |
| Cfr9I | CCCGGG | 1 cut(s) | 82 |
| CseI | GACGC | 1 cut(s) | 370 |
| CviAII | CATG | 2 cut(s) | 257, 379 |
| DdeI | CTNAG | 3 cut(s) | 93, 146, 318 |
| Eco47I | GGWCC | 2 cut(s) | 19, 201 |
| Eco88I | CYCGRG | 1 cut(s) | 82 |
| EcoO109I | RGGNCCY | 1 cut(s) | 109 |
| EcoRII | CCWGG | 2 cut(s) | 15, 27 |
| FaeI | CATG | 2 cut(s) | 260, 382 |
| FaiI | YATR | 3 cut(s) | 189, 258, 380 |
| FatI | CATG | 2 cut(s) | 256, 378 |
| Fnu4HI | GCNGC | 8 cut(s) | 5, 8, 159, 237, 288, 333, 353, 356 |
| Fsp4HI | GCNGC | 8 cut(s) | 5, 8, 159, 237, 288, 333, 353, 356 |
| FspBI | CTAG | 2 cut(s) | 284, 365 |
| GlaI | GCGC | 3 cut(s) | 117, 324, 326 |
| GluI | GCNGC | 8 cut(s) | 5, 8, 159, 237, 288, 333, 353, 356 |
| HaeIII | GGCC | 7 cut(s) | 33, 76, 98, 111, 245, 290, 335 |
| HapII | CCGG | 1 cut(s) | 83 |
| HgaI | GACGC | 1 cut(s) | 370 |
| HhaI | GCGC | 3 cut(s) | 118, 325, 327 |
| Hin1II | CATG | 2 cut(s) | 260, 382 |
| Hin6I | GCGC | 3 cut(s) | 116, 323, 325 |
| HinP1I | GCGC | 3 cut(s) | 116, 323, 325 |
| HinfI | GANTC | 1 cut(s) | 263 |
| HpaII | CCGG | 1 cut(s) | 83 |
| Hpy166II | GTNNAC | 2 cut(s) | 22, 346 |
| Hpy188I | TCNGA | 1 cut(s) | 201 |
| Hpy188III | TCNNGA | 3 cut(s) | 41, 137, 145 |
| Hpy8I | GTNNAC | 2 cut(s) | 22, 346 |
| Hpy99I | CGWCG | 2 cut(s) | 244, 364 |
| HpyAV | CCTTC | 2 cut(s) | 47, 301 |
| HpyCH4V | TGCA | 1 cut(s) | 378 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 184, 242, 296, 329, 361 |
| HpyF3I | CTNAG | 3 cut(s) | 93, 146, 318 |
| Hsp92II | CATG | 2 cut(s) | 260, 382 |
| HspAI | GCGC | 3 cut(s) | 116, 323, 325 |
| Lsp1109I | GCAGC | 4 cut(s) | 145, 248, 339, 342 |
| LweI | GCATC | 1 cut(s) | 118 |
| MaeI | CTAG | 2 cut(s) | 284, 365 |
| MfeI | CAATTG | 1 cut(s) | 227 |
| MhlI | GDGCHC | 1 cut(s) | 68 |
| MluCI | AATT | 1 cut(s) | 227 |
| MnlI | CCTC | 3 cut(s) | 122, 173, 253 |
| MspI | CCGG | 1 cut(s) | 83 |
| MspR9I | CCNGG | 4 cut(s) | 17, 29, 83, 84 |
| MunI | CAATTG | 1 cut(s) | 227 |
| MvaI | CCWGG | 2 cut(s) | 17, 29 |
| MvnI | CGCG | 3 cut(s) | 116, 138, 325 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 184, 242, 296, 329, 361 |
| NciI | CCSGG | 2 cut(s) | 83, 84 |
| NlaIII | CATG | 2 cut(s) | 260, 382 |
| NlaIV | GGNNCC | 3 cut(s) | 77, 110, 203 |
| NruI | TCGCGA | 1 cut(s) | 138 |
| NspV | TTCGAA | 1 cut(s) | 294 |
| PauI | GCGCGC | 1 cut(s) | 323 |
| PfeI | GAWTC | 1 cut(s) | 263 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 28 |
| PkrI | GCNGC | 8 cut(s) | 6, 9, 160, 238, 289, 334, 354, 357 |
| Psp6I | CCWGG | 2 cut(s) | 15, 27 |
| PspGI | CCWGG | 2 cut(s) | 15, 27 |
| PspN4I | GGNNCC | 3 cut(s) | 77, 110, 203 |
| PspPI | GGNCC | 8 cut(s) | 19, 31, 75, 97, 109, 201, 244, 334 |
| PteI | GCGCGC | 1 cut(s) | 323 |
| RruI | TCGCGA | 1 cut(s) | 138 |
| SatI | GCNGC | 8 cut(s) | 5, 8, 159, 237, 288, 333, 353, 356 |
| Sau96I | GGNCC | 8 cut(s) | 19, 31, 75, 97, 109, 201, 244, 334 |
| ScrFI | CCNGG | 4 cut(s) | 17, 29, 83, 84 |
| SduI | GDGCHC | 1 cut(s) | 68 |
| SetI | ASST | 5 cut(s) | 21, 39, 94, 219, 354 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| SfuI | TTCGAA | 1 cut(s) | 294 |
| SinI | GGWCC | 2 cut(s) | 19, 201 |
| SmaI | CCCGGG | 1 cut(s) | 84 |
| Sse9I | AATT | 1 cut(s) | 227 |
| SsiI | CCGC | 5 cut(s) | 25, 178, 234, 287, 332 |
| SspMI | CTAG | 2 cut(s) | 284, 365 |
| StyD4I | CCNGG | 4 cut(s) | 15, 27, 81, 82 |
| TaqI | TCGA | 2 cut(s) | 68, 294 |
| TasI | AATT | 1 cut(s) | 227 |
| TauI | GCSGC | 2 cut(s) | 290, 335 |
| TfiI | GAWTC | 1 cut(s) | 263 |
| TseI | GCWGC | 6 cut(s) | 4, 7, 158, 236, 352, 355 |
| TspDTI | ATGAA | 1 cut(s) | 395 |
| TspMI | CCCGGG | 1 cut(s) | 82 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 28 |
| VpaK11BI | GGWCC | 2 cut(s) | 19, 201 |
| XmaI | CCCGGG | 1 cut(s) | 82 |
| XspI | CTAG | 2 cut(s) | 284, 365 |