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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 198 |
| AatII | GACGTC | 1 cut(s) | 15 |
| Acc36I | ACCTGC | 2 cut(s) | 358, 623 |
| AccB1I | GGYRCC | 1 cut(s) | 221 |
| AccII | CGCG | 6 cut(s) | 104, 387, 417, 550, 552, 576 |
| AciI | CCGC | 9 cut(s) | 33, 36, 45, 102, 225, 328, 348, 387, 415 |
| AcsI | RAATTY | 1 cut(s) | 287 |
| AcuI | CTGAAG | 2 cut(s) | 108, 300 |
| AcyI | GRCGYC | 2 cut(s) | 12, 222 |
| AfaI | GTAC | 2 cut(s) | 138, 255 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 22, 49 |
| AgsI | TTSAA | 1 cut(s) | 296 |
| AjnI | CCWGG | 3 cut(s) | 154, 195, 537 |
| AluBI | AGCT | 5 cut(s) | 236, 307, 353, 594, 643 |
| AluI | AGCT | 5 cut(s) | 236, 307, 353, 594, 643 |
| Alw21I | GWGCWC | 2 cut(s) | 238, 309 |
| Alw26I | GTCTC | 1 cut(s) | 534 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 538 |
| AoxI | GGCC | 4 cut(s) | 40, 388, 447, 468 |
| ApeKI | GCWGC | 6 cut(s) | 187, 227, 350, 353, 578, 581 |
| ApoI | RAATTY | 1 cut(s) | 287 |
| AseI | ATTAAT | 1 cut(s) | 333 |
| AspLEI | GCGC | 8 cut(s) | 106, 224, 481, 517, 550, 552, 576, 578 |
| AspS9I | GGNCC | 4 cut(s) | 41, 200, 448, 469 |
| AsuC2I | CCSGG | 1 cut(s) | 219 |
| AsuNHI | GCTAGC | 1 cut(s) | 590 |
| AvaII | GGWCC | 1 cut(s) | 200 |
| BanI | GGYRCC | 1 cut(s) | 221 |
| BanII | GRGCYC | 3 cut(s) | 238, 309, 492 |
| Bbv12I | GWGCWC | 2 cut(s) | 238, 309 |
| BbvCI | CCTCAGC | 2 cut(s) | 21, 48 |
| BbvI | GCAGC | 6 cut(s) | 199, 214, 340, 362, 565, 568 |
| BccI | CCATC | 1 cut(s) | 244 |
| BceAI | ACGGC | 2 cut(s) | 483, 528 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 599, 633 |
| BciT130I | CCWGG | 3 cut(s) | 156, 197, 539 |
| BcnI | CCSGG | 1 cut(s) | 219 |
| BcoDI | GTCTC | 1 cut(s) | 534 |
| BfaI | CTAG | 5 cut(s) | 140, 425, 518, 591, 602 |
| BfmI | CTRYAG | 2 cut(s) | 2, 185 |
| BfoI | RGCGCY | 2 cut(s) | 225, 518 |
| BfuAI | ACCTGC | 2 cut(s) | 358, 623 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 476 |
| Bme1390I | CCNGG | 4 cut(s) | 156, 197, 219, 539 |
| Bme18I | GGWCC | 1 cut(s) | 200 |
| BmgT120I | GGNCC | 4 cut(s) | 41, 200, 448, 469 |
| BmiI | GGNNCC | 5 cut(s) | 43, 150, 201, 223, 489 |
| BmrFI | CCNGG | 4 cut(s) | 156, 197, 219, 539 |
| BmsI | GCATC | 2 cut(s) | 419, 577 |
| BmtI | GCTAGC | 1 cut(s) | 594 |
| BpmI | CTGGAG | 1 cut(s) | 138 |
| Bpu10I | CCTNAGC | 2 cut(s) | 21, 48 |
| BpuEI | CTTGAG | 2 cut(s) | 222, 528 |
| BpuMI | CCSGG | 1 cut(s) | 219 |
| BsaHI | GRCGYC | 2 cut(s) | 12, 222 |
| BsaJI | CCNNGG | 3 cut(s) | 155, 196, 444 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 22, 49 |
| Bse1I | ACTGG | 1 cut(s) | 480 |
| BseBI | CCWGG | 3 cut(s) | 156, 197, 539 |
| BseDI | CCNNGG | 3 cut(s) | 155, 196, 444 |
| BseGI | GGATG | 1 cut(s) | 410 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 22, 49 |
| BseMII | CTCAG | 3 cut(s) | 12, 39, 545 |
| BseNI | ACTGG | 1 cut(s) | 480 |
| BsePI | GCGCGC | 2 cut(s) | 548, 574 |
| BseRI | GAGGAG | 4 cut(s) | 38, 65, 141, 500 |
| BseXI | GCAGC | 6 cut(s) | 199, 214, 340, 362, 565, 568 |
| BsgI | GTGCAG | 1 cut(s) | 339 |
| Bsh1236I | CGCG | 6 cut(s) | 104, 387, 417, 550, 552, 576 |
| BshFI | GGCC | 4 cut(s) | 42, 390, 449, 470 |
| BshNI | GGYRCC | 1 cut(s) | 221 |
| BsiHKAI | GWGCWC | 2 cut(s) | 238, 309 |
| BsiSI | CCGG | 1 cut(s) | 218 |
| BslFI | GGGAC | 1 cut(s) | 191 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 22, 49 |
| BsmAI | GTCTC | 1 cut(s) | 534 |
| BsmFI | GGGAC | 1 cut(s) | 191 |
| BsnI | GGCC | 4 cut(s) | 42, 390, 449, 470 |
| Bsp1286I | GDGCHC | 3 cut(s) | 238, 309, 492 |
| BspACI | CCGC | 9 cut(s) | 33, 36, 45, 102, 225, 328, 348, 387, 415 |
| BspANI | GGCC | 4 cut(s) | 42, 390, 449, 470 |
| BspCNI | CTCAG | 3 cut(s) | 13, 40, 544 |
| BspFNI | CGCG | 6 cut(s) | 104, 387, 417, 550, 552, 576 |
| BspLI | GGNNCC | 5 cut(s) | 43, 150, 201, 223, 489 |
| BspMAI | CTGCAG | 2 cut(s) | 6, 189 |
| BspMI | ACCTGC | 2 cut(s) | 358, 623 |
| BspOI | GCTAGC | 1 cut(s) | 594 |
| BspT107I | GGYRCC | 1 cut(s) | 221 |
| BsrI | ACTGG | 1 cut(s) | 480 |
| BssECI | CCNNGG | 3 cut(s) | 155, 196, 444 |
| BssHII | GCGCGC | 2 cut(s) | 548, 574 |
| BssNI | GRCGYC | 2 cut(s) | 12, 222 |
| BssT1I | CCWWGG | 1 cut(s) | 444 |
| Bst2UI | CCWGG | 3 cut(s) | 156, 197, 539 |
| Bst4CI | ACNGT | 2 cut(s) | 463, 559 |
| BstACI | GRCGYC | 2 cut(s) | 12, 222 |
| BstC8I | GCNNGC | 4 cut(s) | 40, 550, 576, 592 |
| BstDEI | CTNAG | 3 cut(s) | 21, 48, 531 |
| BstF5I | GGATG | 1 cut(s) | 410 |
| BstFNI | CGCG | 6 cut(s) | 104, 387, 417, 550, 552, 576 |
| BstH2I | RGCGCY | 2 cut(s) | 225, 518 |
| BstHHI | GCGC | 8 cut(s) | 106, 224, 481, 517, 550, 552, 576, 578 |
| BstMAI | GTCTC | 1 cut(s) | 534 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 44, 71, 170, 233, 476, 487, 521, 575, 587 |
| BstNI | CCWGG | 3 cut(s) | 156, 197, 539 |
| BstSCI | CCNGG | 4 cut(s) | 154, 195, 217, 537 |
| BstSFI | CTRYAG | 2 cut(s) | 2, 185 |
| BstUI | CGCG | 6 cut(s) | 104, 387, 417, 550, 552, 576 |
| BstV1I | GCAGC | 6 cut(s) | 199, 214, 340, 362, 565, 568 |
| BsuRI | GGCC | 4 cut(s) | 42, 390, 449, 470 |
| BtgZI | GCGATG | 2 cut(s) | 67, 539 |
| BtsCI | GGATG | 1 cut(s) | 410 |
| BveI | ACCTGC | 2 cut(s) | 358, 623 |
| Cac8I | GCNNGC | 4 cut(s) | 40, 550, 576, 592 |
| CaiI | CAGNNNCTG | 1 cut(s) | 538 |
| CfoI | GCGC | 8 cut(s) | 106, 224, 481, 517, 550, 552, 576, 578 |
| Cfr13I | GGNCC | 4 cut(s) | 41, 200, 448, 469 |
| Csp6I | GTAC | 2 cut(s) | 137, 254 |
| CviAII | CATG | 1 cut(s) | 629 |
| CviQI | GTAC | 2 cut(s) | 137, 254 |
| DdeI | CTNAG | 3 cut(s) | 21, 48, 531 |
| DinI | GGCGCC | 1 cut(s) | 223 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 198 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 198 |
| Ecl136II | GAGCTC | 2 cut(s) | 236, 307 |
| Eco130I | CCWWGG | 1 cut(s) | 444 |
| Eco24I | GRGCYC | 3 cut(s) | 238, 309, 492 |
| Eco47I | GGWCC | 1 cut(s) | 200 |
| Eco53kI | GAGCTC | 2 cut(s) | 236, 307 |
| Eco57I | CTGAAG | 2 cut(s) | 108, 300 |
| EcoICRI | GAGCTC | 2 cut(s) | 236, 307 |
| EcoO109I | RGGNCCY | 1 cut(s) | 200 |
| EcoRII | CCWGG | 3 cut(s) | 154, 195, 537 |
| EcoT14I | CCWWGG | 1 cut(s) | 444 |
| EcoT38I | GRGCYC | 3 cut(s) | 238, 309, 492 |
| EgeI | GGCGCC | 1 cut(s) | 223 |
| EheI | GGCGCC | 1 cut(s) | 223 |
| ErhI | CCWWGG | 1 cut(s) | 444 |
| FaeI | CATG | 1 cut(s) | 632 |
| FaiI | YATR | 4 cut(s) | 270, 301, 303, 630 |
| FaqI | GGGAC | 1 cut(s) | 191 |
| FatI | CATG | 1 cut(s) | 628 |
| FauI | CCCGC | 3 cut(s) | 52, 109, 422 |
| FauNDI | CATATG | 1 cut(s) | 301 |
| FokI | GGATG | 1 cut(s) | 397 |
| FriOI | GRGCYC | 3 cut(s) | 238, 309, 492 |
| FspBI | CTAG | 5 cut(s) | 140, 425, 518, 591, 602 |
| GlaI | GCGC | 8 cut(s) | 105, 223, 480, 516, 549, 551, 575, 577 |
| GsuI | CTGGAG | 1 cut(s) | 138 |
| HaeII | RGCGCY | 2 cut(s) | 225, 518 |
| HaeIII | GGCC | 4 cut(s) | 42, 390, 449, 470 |
| HapII | CCGG | 1 cut(s) | 218 |
| HhaI | GCGC | 8 cut(s) | 106, 224, 481, 517, 550, 552, 576, 578 |
| Hin1I | GRCGYC | 2 cut(s) | 12, 222 |
| Hin1II | CATG | 1 cut(s) | 632 |
| Hin6I | GCGC | 8 cut(s) | 104, 222, 479, 515, 548, 550, 574, 576 |
| HinP1I | GCGC | 8 cut(s) | 104, 222, 479, 515, 548, 550, 574, 576 |
| HindIII | AAGCTT | 1 cut(s) | 641 |
| HinfI | GANTC | 2 cut(s) | 192, 419 |
| HpaII | CCGG | 1 cut(s) | 218 |
| Hpy166II | GTNNAC | 1 cut(s) | 137 |
| Hpy188I | TCNGA | 2 cut(s) | 249, 534 |
| Hpy188III | TCNNGA | 3 cut(s) | 203, 239, 602 |
| Hpy8I | GTNNAC | 1 cut(s) | 137 |
| HpyAV | CCTTC | 2 cut(s) | 105, 329 |
| HpyCH4III | ACNGT | 2 cut(s) | 463, 559 |
| HpyCH4IV | ACGT | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 187, 313, 356, 395, 632 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 44, 71, 170, 233, 476, 487, 521, 575, 587 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 48, 531 |
| HpySE526I | ACGT | 1 cut(s) | 12 |
| Hsp92I | GRCGYC | 2 cut(s) | 12, 222 |
| Hsp92II | CATG | 1 cut(s) | 632 |
| HspAI | GCGC | 8 cut(s) | 104, 222, 479, 515, 548, 550, 574, 576 |
| KasI | GGCGCC | 1 cut(s) | 221 |
| LmnI | GCTCC | 2 cut(s) | 154, 487 |
| Lsp1109I | GCAGC | 6 cut(s) | 199, 214, 340, 362, 565, 568 |
| LweI | GCATC | 2 cut(s) | 419, 577 |
| MaeI | CTAG | 5 cut(s) | 140, 425, 518, 591, 602 |
| MaeII | ACGT | 1 cut(s) | 12 |
| MaeIII | GTNAC | 3 cut(s) | 8, 457, 463 |
| MboII | GAAGA | 2 cut(s) | 293, 608 |
| MhlI | GDGCHC | 3 cut(s) | 238, 309, 492 |
| MluCI | AATT | 3 cut(s) | 287, 452, 611 |
| Mly113I | GGCGCC | 1 cut(s) | 222 |
| MlyI | GAGTC | 2 cut(s) | 186, 413 |
| MnlI | CCTC | 9 cut(s) | 16, 19, 43, 46, 117, 162, 168, 400, 478 |
| MseI | TTAA | 2 cut(s) | 333, 509 |
| MspA1I | CMGCKG | 4 cut(s) | 38, 47, 227, 353 |
| MspI | CCGG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 4 cut(s) | 156, 197, 219, 539 |
| MvaI | CCWGG | 3 cut(s) | 156, 197, 539 |
| MvnI | CGCG | 6 cut(s) | 104, 387, 417, 550, 552, 576 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 44, 71, 170, 233, 476, 487, 521, 575, 587 |
| NarI | GGCGCC | 1 cut(s) | 222 |
| NciI | CCSGG | 1 cut(s) | 219 |
| NdeI | CATATG | 1 cut(s) | 301 |
| NheI | GCTAGC | 1 cut(s) | 590 |
| NlaIII | CATG | 1 cut(s) | 632 |
| NlaIV | GGNNCC | 5 cut(s) | 43, 150, 201, 223, 489 |
| NmeAIII | GCCGAG | 1 cut(s) | 287 |
| NmuCI | GTSAC | 2 cut(s) | 8, 463 |
| PauI | GCGCGC | 2 cut(s) | 548, 574 |
| PleI | GAGTC | 2 cut(s) | 186, 413 |
| PluTI | GGCGCC | 1 cut(s) | 225 |
| PpsI | GAGTC | 2 cut(s) | 186, 413 |
| PpuMI | RGGWCCY | 1 cut(s) | 200 |
| PshBI | ATTAAT | 1 cut(s) | 333 |
| Psp124BI | GAGCTC | 2 cut(s) | 238, 309 |
| Psp5II | RGGWCCY | 1 cut(s) | 200 |
| Psp6I | CCWGG | 3 cut(s) | 154, 195, 537 |
| PspGI | CCWGG | 3 cut(s) | 154, 195, 537 |
| PspN4I | GGNNCC | 5 cut(s) | 43, 150, 201, 223, 489 |
| PspPI | GGNCC | 4 cut(s) | 41, 200, 448, 469 |
| PspPPI | RGGWCCY | 1 cut(s) | 200 |
| PstI | CTGCAG | 2 cut(s) | 6, 189 |
| PstNI | CAGNNNCTG | 1 cut(s) | 538 |
| PteI | GCGCGC | 2 cut(s) | 548, 574 |
| PvuII | CAGCTG | 1 cut(s) | 353 |
| RsaI | GTAC | 2 cut(s) | 138, 255 |
| RsaNI | GTAC | 2 cut(s) | 137, 254 |
| SacI | GAGCTC | 2 cut(s) | 238, 309 |
| SaqAI | TTAA | 2 cut(s) | 333, 509 |
| Sau96I | GGNCC | 4 cut(s) | 41, 200, 448, 469 |
| SchI | GAGTC | 2 cut(s) | 186, 413 |
| ScrFI | CCNGG | 4 cut(s) | 156, 197, 219, 539 |
| SduI | GDGCHC | 3 cut(s) | 238, 309, 492 |
| SfaNI | GCATC | 2 cut(s) | 419, 577 |
| SfcI | CTRYAG | 2 cut(s) | 2, 185 |
| SfoI | GGCGCC | 1 cut(s) | 223 |
| SinI | GGWCC | 1 cut(s) | 200 |
| SmlI | CTYRAG | 2 cut(s) | 237, 543 |
| SmoI | CTYRAG | 2 cut(s) | 237, 543 |
| Sse9I | AATT | 3 cut(s) | 287, 452, 611 |
| SsiI | CCGC | 9 cut(s) | 33, 36, 45, 102, 225, 328, 348, 387, 415 |
| SspDI | GGCGCC | 1 cut(s) | 221 |
| SspMI | CTAG | 5 cut(s) | 140, 425, 518, 591, 602 |
| SstI | GAGCTC | 2 cut(s) | 238, 309 |
| StyD4I | CCNGG | 4 cut(s) | 154, 195, 217, 537 |
| StyI | CCWWGG | 1 cut(s) | 444 |
| TaaI | ACNGT | 2 cut(s) | 463, 559 |
| TaiI | ACGT | 1 cut(s) | 15 |
| TaqI | TCGA | 3 cut(s) | 438, 562, 637 |
| TasI | AATT | 3 cut(s) | 287, 452, 611 |
| TatI | WGTACW | 1 cut(s) | 136 |
| TauI | GCSGC | 4 cut(s) | 35, 38, 227, 390 |
| Tru1I | TTAA | 2 cut(s) | 333, 509 |
| Tru9I | TTAA | 2 cut(s) | 333, 509 |
| TseFI | GTSAC | 2 cut(s) | 8, 463 |
| TseI | GCWGC | 6 cut(s) | 187, 227, 350, 353, 578, 581 |
| Tsp45I | GTSAC | 2 cut(s) | 8, 463 |
| TspDTI | ATGAA | 3 cut(s) | 183, 300, 351 |
| VpaK11BI | GGWCC | 1 cut(s) | 200 |
| VspI | ATTAAT | 1 cut(s) | 333 |
| XapI | RAATTY | 1 cut(s) | 287 |
| XbaI | TCTAGA | 1 cut(s) | 601 |
| XspI | CTAG | 5 cut(s) | 140, 425, 518, 591, 602 |
| ZraI | GACGTC | 1 cut(s) | 13 |