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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 213 |
| AciI | CCGC | 6 cut(s) | 104, 116, 170, 194, 234, 308 |
| AclWI | GGATC | 3 cut(s) | 263, 291, 311 |
| AcoI | YGGCCR | 1 cut(s) | 117 |
| AcvI | CACGTG | 1 cut(s) | 86 |
| AfaI | GTAC | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| AgsI | TTSAA | 2 cut(s) | 80, 134 |
| AluBI | AGCT | 3 cut(s) | 31, 113, 334 |
| AluI | AGCT | 3 cut(s) | 31, 113, 334 |
| Alw26I | GTCTC | 2 cut(s) | 69, 160 |
| AlwI | GGATC | 3 cut(s) | 263, 291, 311 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 143 |
| AoxI | GGCC | 4 cut(s) | 3, 117, 199, 361 |
| ApeKI | GCWGC | 3 cut(s) | 47, 113, 231 |
| AspLEI | GCGC | 1 cut(s) | 292 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| AsuII | TTCGAA | 1 cut(s) | 54 |
| BbrPI | CACGTG | 1 cut(s) | 86 |
| BbvCI | CCTCAGC | 1 cut(s) | 27 |
| BbvI | GCAGC | 3 cut(s) | 59, 100, 243 |
| BcoDI | GTCTC | 2 cut(s) | 69, 160 |
| BfaI | CTAG | 4 cut(s) | 44, 126, 173, 281 |
| BfoI | RGCGCY | 1 cut(s) | 293 |
| BisI | GCNGC | 5 cut(s) | 48, 114, 117, 232, 235 |
| BlsI | GCNGC | 5 cut(s) | 49, 115, 118, 233, 236 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 1 cut(s) | 24 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 140, 172 |
| Bpu10I | CCTNAGC | 1 cut(s) | 27 |
| Bpu14I | TTCGAA | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 1 cut(s) | 32 |
| BsaAI | YACGTR | 1 cut(s) | 86 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| Bse1I | ACTGG | 1 cut(s) | 320 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| BseMII | CTCAG | 4 cut(s) | 41, 80, 135, 174 |
| BseNI | ACTGG | 1 cut(s) | 320 |
| BseRI | GAGGAG | 3 cut(s) | 148, 161, 265 |
| BseX3I | CGGCCG | 1 cut(s) | 117 |
| BseXI | GCAGC | 3 cut(s) | 59, 100, 243 |
| Bsh1285I | CGRYCG | 1 cut(s) | 120 |
| BshFI | GGCC | 4 cut(s) | 5, 119, 201, 363 |
| BsiEI | CGRYCG | 1 cut(s) | 120 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 103, 208 |
| BsmAI | GTCTC | 2 cut(s) | 69, 160 |
| BsmI | GAATGC | 1 cut(s) | 282 |
| BsnI | GGCC | 4 cut(s) | 5, 119, 201, 363 |
| Bsp119I | TTCGAA | 1 cut(s) | 54 |
| Bsp143I | GATC | 4 cut(s) | 244, 255, 296, 316 |
| BspACI | CCGC | 6 cut(s) | 104, 116, 170, 194, 234, 308 |
| BspANI | GGCC | 4 cut(s) | 5, 119, 201, 363 |
| BspCNI | CTCAG | 4 cut(s) | 40, 79, 136, 173 |
| BspLI | GGNNCC | 1 cut(s) | 24 |
| BspPI | GGATC | 3 cut(s) | 263, 291, 311 |
| BspT104I | TTCGAA | 1 cut(s) | 54 |
| BsrI | ACTGG | 1 cut(s) | 320 |
| BssMI | GATC | 4 cut(s) | 244, 255, 296, 316 |
| Bst4CI | ACNGT | 1 cut(s) | 218 |
| Bst6I | CTCTTC | 1 cut(s) | 260 |
| BstBAI | YACGTR | 1 cut(s) | 86 |
| BstBI | TTCGAA | 1 cut(s) | 54 |
| BstC8I | GCNNGC | 2 cut(s) | 111, 170 |
| BstDEI | CTNAG | 6 cut(s) | 27, 66, 73, 144, 160, 241 |
| BstH2I | RGCGCY | 1 cut(s) | 293 |
| BstHHI | GCGC | 1 cut(s) | 292 |
| BstKTI | GATC | 4 cut(s) | 247, 258, 299, 319 |
| BstMAI | GTCTC | 2 cut(s) | 69, 160 |
| BstMBI | GATC | 4 cut(s) | 244, 255, 296, 316 |
| BstMCI | CGRYCG | 1 cut(s) | 120 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 110, 122 |
| BstV1I | GCAGC | 3 cut(s) | 59, 100, 243 |
| BstX2I | RGATCY | 3 cut(s) | 255, 296, 316 |
| BstYI | RGATCY | 3 cut(s) | 255, 296, 316 |
| BstZI | CGGCCG | 1 cut(s) | 117 |
| BsuRI | GGCC | 4 cut(s) | 5, 119, 201, 363 |
| BtgZI | GCGATG | 1 cut(s) | 74 |
| Cac8I | GCNNGC | 2 cut(s) | 111, 170 |
| CaiI | CAGNNNCTG | 1 cut(s) | 143 |
| CfoI | GCGC | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 1 cut(s) | 219 |
| CviAII | CATG | 1 cut(s) | 375 |
| CviJI | RGCY | 9 cut(s) | 5, 31, 50, 113, 119, 201, 334, 353, 363 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 31, 50, 113, 119, 201, 334, 353, 363 |
| CviQI | GTAC | 1 cut(s) | 219 |
| DdeI | CTNAG | 6 cut(s) | 27, 66, 73, 144, 160, 241 |
| DpnI | GATC | 4 cut(s) | 246, 257, 298, 318 |
| DpnII | GATC | 4 cut(s) | 244, 255, 296, 316 |
| EaeI | YGGCCR | 1 cut(s) | 117 |
| EagI | CGGCCG | 1 cut(s) | 117 |
| Eam1104I | CTCTTC | 1 cut(s) | 260 |
| EarI | CTCTTC | 1 cut(s) | 260 |
| EciI | GGCGGA | 1 cut(s) | 209 |
| EclXI | CGGCCG | 1 cut(s) | 117 |
| Eco52I | CGGCCG | 1 cut(s) | 117 |
| Eco72I | CACGTG | 1 cut(s) | 86 |
| FaeI | CATG | 1 cut(s) | 378 |
| FaiI | YATR | 3 cut(s) | 181, 339, 376 |
| FatI | CATG | 1 cut(s) | 374 |
| FauI | CCCGC | 2 cut(s) | 177, 315 |
| FblI | GTMKAC | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 5 cut(s) | 48, 114, 117, 232, 235 |
| Fsp4HI | GCNGC | 5 cut(s) | 48, 114, 117, 232, 235 |
| FspBI | CTAG | 4 cut(s) | 44, 126, 173, 281 |
| GlaI | GCGC | 1 cut(s) | 291 |
| GluI | GCNGC | 5 cut(s) | 48, 114, 117, 232, 235 |
| HaeII | RGCGCY | 1 cut(s) | 293 |
| HaeIII | GGCC | 4 cut(s) | 5, 119, 201, 363 |
| HgaI | GACGC | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 292 |
| Hin1II | CATG | 1 cut(s) | 378 |
| Hin6I | GCGC | 1 cut(s) | 290 |
| HinP1I | GCGC | 1 cut(s) | 290 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HindIII | AAGCTT | 1 cut(s) | 332 |
| HinfI | GANTC | 2 cut(s) | 140, 149 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 1 cut(s) | 214 |
| Hpy188I | TCNGA | 5 cut(s) | 69, 98, 145, 163, 249 |
| Hpy8I | GTNNAC | 1 cut(s) | 214 |
| Hpy99I | CGWCG | 1 cut(s) | 125 |
| HpyAV | CCTTC | 4 cut(s) | 61, 183, 191, 310 |
| HpyCH4III | ACNGT | 1 cut(s) | 218 |
| HpyCH4IV | ACGT | 1 cut(s) | 85 |
| HpyCH4V | TGCA | 1 cut(s) | 374 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 110, 122 |
| HpyF3I | CTNAG | 6 cut(s) | 27, 66, 73, 144, 160, 241 |
| HpySE526I | ACGT | 1 cut(s) | 85 |
| Hsp92II | CATG | 1 cut(s) | 378 |
| HspAI | GCGC | 1 cut(s) | 290 |
| Kzo9I | GATC | 4 cut(s) | 244, 255, 296, 316 |
| LmnI | GCTCC | 1 cut(s) | 106 |
| LpnPI | CCDG | 5 cut(s) | 150, 244, 307, 327, 333 |
| Lsp1109I | GCAGC | 3 cut(s) | 59, 100, 243 |
| MaeI | CTAG | 4 cut(s) | 44, 126, 173, 281 |
| MaeII | ACGT | 1 cut(s) | 85 |
| MaeIII | GTNAC | 1 cut(s) | 322 |
| MalI | GATC | 4 cut(s) | 246, 257, 298, 318 |
| MboI | GATC | 4 cut(s) | 244, 255, 296, 316 |
| MboII | GAAGA | 3 cut(s) | 198, 277, 285 |
| MflI | RGATCY | 3 cut(s) | 255, 296, 316 |
| MlyI | GAGTC | 1 cut(s) | 158 |
| MmeI | TCCRAC | 1 cut(s) | 121 |
| MnlI | CCTC | 8 cut(s) | 13, 36, 139, 169, 202, 243, 246, 263 |
| MseI | TTAA | 1 cut(s) | 330 |
| MspA1I | CMGCKG | 1 cut(s) | 234 |
| Mva1269I | GAATGC | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 110, 122 |
| NdeII | GATC | 4 cut(s) | 244, 255, 296, 316 |
| NlaIII | CATG | 1 cut(s) | 378 |
| NlaIV | GGNNCC | 1 cut(s) | 24 |
| NmuCI | GTSAC | 1 cut(s) | 322 |
| NspV | TTCGAA | 1 cut(s) | 54 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 219 |
| PctI | GAATGC | 1 cut(s) | 282 |
| PfeI | GAWTC | 1 cut(s) | 140 |
| PkrI | GCNGC | 5 cut(s) | 49, 115, 118, 233, 236 |
| PleI | GAGTC | 1 cut(s) | 157 |
| PmaCI | CACGTG | 1 cut(s) | 86 |
| PmlI | CACGTG | 1 cut(s) | 86 |
| PpsI | GAGTC | 1 cut(s) | 157 |
| Ppu21I | YACGTR | 1 cut(s) | 86 |
| PspCI | CACGTG | 1 cut(s) | 86 |
| PspN4I | GGNNCC | 1 cut(s) | 24 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PstNI | CAGNNNCTG | 1 cut(s) | 143 |
| PsuI | RGATCY | 3 cut(s) | 255, 296, 316 |
| RsaI | GTAC | 1 cut(s) | 220 |
| RsaNI | GTAC | 1 cut(s) | 219 |
| SalI | GTCGAC | 1 cut(s) | 212 |
| SaqAI | TTAA | 1 cut(s) | 330 |
| SatI | GCNGC | 5 cut(s) | 48, 114, 117, 232, 235 |
| Sau3AI | GATC | 4 cut(s) | 244, 255, 296, 316 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 1 cut(s) | 158 |
| SetI | ASST | 7 cut(s) | 28, 33, 88, 115, 213, 336, 359 |
| SfuI | TTCGAA | 1 cut(s) | 54 |
| SmlI | CTYRAG | 1 cut(s) | 11 |
| SmoI | CTYRAG | 1 cut(s) | 11 |
| SsiI | CCGC | 6 cut(s) | 104, 116, 170, 194, 234, 308 |
| SspMI | CTAG | 4 cut(s) | 44, 126, 173, 281 |
| TaaI | ACNGT | 1 cut(s) | 218 |
| TaiI | ACGT | 1 cut(s) | 88 |
| TaqI | TCGA | 2 cut(s) | 54, 213 |
| TauI | GCSGC | 2 cut(s) | 119, 237 |
| TfiI | GAWTC | 1 cut(s) | 140 |
| Tru1I | TTAA | 1 cut(s) | 330 |
| Tru9I | TTAA | 1 cut(s) | 330 |
| TseFI | GTSAC | 1 cut(s) | 322 |
| TseI | GCWGC | 3 cut(s) | 47, 113, 231 |
| Tsp45I | GTSAC | 1 cut(s) | 322 |
| XmiI | GTMKAC | 1 cut(s) | 213 |
| XspI | CTAG | 4 cut(s) | 44, 126, 173, 281 |