Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 110 |
| Acc36I | ACCTGC | 1 cut(s) | 482 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 182 |
| AccII | CGCG | 6 cut(s) | 107, 280, 453, 460, 466, 534 |
| AciI | CCGC | 7 cut(s) | 278, 372, 460, 478, 534, 558, 582 |
| AcoI | YGGCCR | 1 cut(s) | 413 |
| AcuI | CTGAAG | 1 cut(s) | 586 |
| AfaI | GTAC | 1 cut(s) | 314 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 405, 536, 665 |
| AflIII | ACRYGT | 1 cut(s) | 105 |
| AgsI | TTSAA | 2 cut(s) | 46, 157 |
| AjnI | CCWGG | 2 cut(s) | 65, 176 |
| Alw21I | GWGCWC | 3 cut(s) | 88, 199, 433 |
| Alw26I | GTCTC | 3 cut(s) | 206, 357, 431 |
| Alw44I | GTGCAC | 1 cut(s) | 429 |
| AoxI | GGCC | 5 cut(s) | 268, 332, 413, 475, 652 |
| ApaLI | GTGCAC | 1 cut(s) | 429 |
| ApeKI | GCWGC | 3 cut(s) | 56, 167, 488 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 590, 622 |
| AseI | ATTAAT | 1 cut(s) | 132 |
| AspLEI | GCGC | 2 cut(s) | 460, 466 |
| AspS9I | GGNCC | 4 cut(s) | 63, 174, 269, 333 |
| AsuC2I | CCSGG | 2 cut(s) | 262, 360 |
| AsuHPI | GGTGA | 2 cut(s) | 215, 490 |
| AvaII | GGWCC | 2 cut(s) | 63, 174 |
| BaeGI | GKGCMC | 3 cut(s) | 74, 185, 433 |
| BalI | TGGCCA | 1 cut(s) | 415 |
| BanI | GGYRCC | 2 cut(s) | 71, 182 |
| BauI | CACGAG | 1 cut(s) | 87 |
| BbsI | GAAGAC | 1 cut(s) | 311 |
| Bbv12I | GWGCWC | 3 cut(s) | 88, 199, 433 |
| BbvI | GCAGC | 3 cut(s) | 43, 154, 475 |
| BccI | CCATC | 8 cut(s) | 261, 311, 399, 424, 531, 653, 659, 668 |
| BceAI | ACGGC | 4 cut(s) | 69, 180, 347, 658 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 38, 61, 72, 95, 149, 172, 183, 206 |
| BciT130I | CCWGG | 2 cut(s) | 67, 178 |
| BcnI | CCSGG | 2 cut(s) | 262, 360 |
| BcoDI | GTCTC | 3 cut(s) | 206, 357, 431 |
| BfaI | CTAG | 3 cut(s) | 209, 341, 473 |
| BfmI | CTRYAG | 1 cut(s) | 489 |
| BfuAI | ACCTGC | 1 cut(s) | 482 |
| BglII | AGATCT | 1 cut(s) | 469 |
| BisI | GCNGC | 6 cut(s) | 57, 168, 373, 478, 489, 558 |
| BlsI | GCNGC | 6 cut(s) | 58, 169, 374, 479, 490, 559 |
| Bme1390I | CCNGG | 4 cut(s) | 67, 178, 262, 360 |
| Bme18I | GGWCC | 2 cut(s) | 63, 174 |
| BmgT120I | GGNCC | 4 cut(s) | 63, 174, 269, 333 |
| BmiI | GGNNCC | 3 cut(s) | 6, 73, 184 |
| BmrFI | CCNGG | 4 cut(s) | 67, 178, 262, 360 |
| BmsI | GCATC | 2 cut(s) | 115, 289 |
| BpiI | GAAGAC | 1 cut(s) | 311 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 610, 642 |
| BpuMI | CCSGG | 2 cut(s) | 262, 360 |
| Bsa29I | ATCGAT | 2 cut(s) | 27, 663 |
| BsaI | GGTCTC | 1 cut(s) | 206 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 177 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 219, 249 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 405, 536, 665 |
| Bse1I | ACTGG | 3 cut(s) | 75, 186, 655 |
| BseBI | CCWGG | 2 cut(s) | 67, 178 |
| BseCI | ATCGAT | 2 cut(s) | 27, 663 |
| BseDI | CCNNGG | 2 cut(s) | 66, 177 |
| BseGI | GGATG | 2 cut(s) | 416, 636 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 405, 536, 665 |
| BseNI | ACTGG | 3 cut(s) | 75, 186, 655 |
| BseSI | GKGCMC | 3 cut(s) | 74, 185, 433 |
| BseXI | GCAGC | 3 cut(s) | 43, 154, 475 |
| BseYI | CCCAGC | 2 cut(s) | 271, 375 |
| Bsh1236I | CGCG | 6 cut(s) | 107, 280, 453, 460, 466, 534 |
| BshFI | GGCC | 5 cut(s) | 270, 334, 415, 477, 654 |
| BshNI | GGYRCC | 2 cut(s) | 71, 182 |
| BshVI | ATCGAT | 2 cut(s) | 27, 663 |
| BsiHKAI | GWGCWC | 3 cut(s) | 88, 199, 433 |
| BsiSI | CCGG | 2 cut(s) | 261, 360 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 405, 536, 665 |
| BsmAI | GTCTC | 3 cut(s) | 206, 357, 431 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsmI | GAATGC | 2 cut(s) | 201, 490 |
| BsnI | GGCC | 5 cut(s) | 270, 334, 415, 477, 654 |
| Bso31I | GGTCTC | 1 cut(s) | 206 |
| Bsp1286I | GDGCHC | 5 cut(s) | 74, 88, 185, 199, 433 |
| Bsp143I | GATC | 3 cut(s) | 28, 469, 511 |
| Bsp68I | TCGCGA | 1 cut(s) | 453 |
| BspACI | CCGC | 7 cut(s) | 278, 372, 460, 478, 534, 558, 582 |
| BspANI | GGCC | 5 cut(s) | 270, 334, 415, 477, 654 |
| BspDI | ATCGAT | 2 cut(s) | 27, 663 |
| BspFNI | CGCG | 6 cut(s) | 107, 280, 453, 460, 466, 534 |
| BspLI | GGNNCC | 3 cut(s) | 6, 73, 184 |
| BspMAI | CTGCAG | 1 cut(s) | 493 |
| BspMI | ACCTGC | 1 cut(s) | 482 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 182 |
| BspTNI | GGTCTC | 1 cut(s) | 206 |
| BsrI | ACTGG | 3 cut(s) | 75, 186, 655 |
| BssECI | CCNNGG | 2 cut(s) | 66, 177 |
| BssMI | GATC | 3 cut(s) | 28, 469, 511 |
| BssSI | CACGAG | 1 cut(s) | 87 |
| Bst2BI | CACGAG | 1 cut(s) | 87 |
| Bst2UI | CCWGG | 2 cut(s) | 67, 178 |
| Bst4CI | ACNGT | 1 cut(s) | 317 |
| BstC8I | GCNNGC | 4 cut(s) | 199, 462, 548, 671 |
| BstDEI | CTNAG | 2 cut(s) | 12, 100 |
| BstF5I | GGATG | 2 cut(s) | 416, 636 |
| BstFNI | CGCG | 6 cut(s) | 107, 280, 453, 460, 466, 534 |
| BstHHI | GCGC | 2 cut(s) | 460, 466 |
| BstKTI | GATC | 3 cut(s) | 31, 472, 514 |
| BstMAI | GTCTC | 3 cut(s) | 206, 357, 431 |
| BstMBI | GATC | 3 cut(s) | 28, 469, 511 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 113, 679 |
| BstNI | CCWGG | 2 cut(s) | 67, 178 |
| BstSCI | CCNGG | 4 cut(s) | 65, 176, 260, 358 |
| BstSFI | CTRYAG | 1 cut(s) | 489 |
| BstSLI | GKGCMC | 3 cut(s) | 74, 185, 433 |
| BstUI | CGCG | 6 cut(s) | 107, 280, 453, 460, 466, 534 |
| BstV1I | GCAGC | 3 cut(s) | 43, 154, 475 |
| BstV2I | GAAGAC | 1 cut(s) | 311 |
| BstX2I | RGATCY | 1 cut(s) | 469 |
| BstYI | RGATCY | 1 cut(s) | 469 |
| Bsu15I | ATCGAT | 2 cut(s) | 27, 663 |
| BsuRI | GGCC | 5 cut(s) | 270, 334, 415, 477, 654 |
| BsuTUI | ATCGAT | 2 cut(s) | 27, 663 |
| BtgZI | GCGATG | 1 cut(s) | 289 |
| BtsCI | GGATG | 2 cut(s) | 416, 636 |
| BtsIMutI | CAGTG | 1 cut(s) | 648 |
| BtuMI | TCGCGA | 1 cut(s) | 453 |
| BveI | ACCTGC | 1 cut(s) | 482 |
| Cac8I | GCNNGC | 4 cut(s) | 199, 462, 548, 671 |
| CfoI | GCGC | 2 cut(s) | 460, 466 |
| Cfr13I | GGNCC | 4 cut(s) | 63, 174, 269, 333 |
| ClaI | ATCGAT | 2 cut(s) | 27, 663 |
| CseI | GACGC | 1 cut(s) | 113 |
| Csp6I | GTAC | 1 cut(s) | 313 |
| CviAII | CATG | 2 cut(s) | 310, 683 |
| CviQI | GTAC | 1 cut(s) | 313 |
| DdeI | CTNAG | 2 cut(s) | 12, 100 |
| DpnI | GATC | 3 cut(s) | 30, 471, 513 |
| DpnII | GATC | 3 cut(s) | 28, 469, 511 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 110 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 110 |
| EaeI | YGGCCR | 1 cut(s) | 413 |
| Eco31I | GGTCTC | 1 cut(s) | 206 |
| Eco47I | GGWCC | 2 cut(s) | 63, 174 |
| Eco57I | CTGAAG | 1 cut(s) | 586 |
| EcoRII | CCWGG | 2 cut(s) | 65, 176 |
| FaeI | CATG | 2 cut(s) | 313, 686 |
| FaiI | YATR | 3 cut(s) | 311, 678, 684 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FatI | CATG | 2 cut(s) | 309, 682 |
| FauI | CCCGC | 1 cut(s) | 453 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 168, 373, 478, 489, 558 |
| FokI | GGATG | 2 cut(s) | 403, 623 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 168, 373, 478, 489, 558 |
| FspBI | CTAG | 3 cut(s) | 209, 341, 473 |
| GlaI | GCGC | 2 cut(s) | 459, 465 |
| GluI | GCNGC | 6 cut(s) | 57, 168, 373, 478, 489, 558 |
| GsaI | CCCAGC | 2 cut(s) | 275, 379 |
| HaeIII | GGCC | 5 cut(s) | 270, 334, 415, 477, 654 |
| HapII | CCGG | 2 cut(s) | 261, 360 |
| HgaI | GACGC | 1 cut(s) | 113 |
| HhaI | GCGC | 2 cut(s) | 460, 466 |
| Hin1II | CATG | 2 cut(s) | 313, 686 |
| Hin6I | GCGC | 2 cut(s) | 458, 464 |
| HinP1I | GCGC | 2 cut(s) | 458, 464 |
| HinfI | GANTC | 2 cut(s) | 355, 695 |
| HpaII | CCGG | 2 cut(s) | 261, 360 |
| HphI | GGTGA | 2 cut(s) | 215, 490 |
| Hpy166II | GTNNAC | 1 cut(s) | 431 |
| Hpy188I | TCNGA | 6 cut(s) | 63, 174, 250, 329, 350, 605 |
| Hpy188III | TCNNGA | 5 cut(s) | 32, 89, 209, 452, 574 |
| Hpy8I | GTNNAC | 1 cut(s) | 431 |
| Hpy99I | CGWCG | 1 cut(s) | 333 |
| HpyAV | CCTTC | 4 cut(s) | 86, 248, 345, 665 |
| HpyCH4III | ACNGT | 1 cut(s) | 317 |
| HpyCH4V | TGCA | 3 cut(s) | 431, 491, 682 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 113, 679 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 100 |
| Hsp92II | CATG | 2 cut(s) | 313, 686 |
| HspAI | GCGC | 2 cut(s) | 458, 464 |
| Kzo9I | GATC | 3 cut(s) | 28, 469, 511 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 154, 475 |
| LweI | GCATC | 2 cut(s) | 115, 289 |
| MaeI | CTAG | 3 cut(s) | 209, 341, 473 |
| MalI | GATC | 3 cut(s) | 30, 471, 513 |
| MboI | GATC | 3 cut(s) | 28, 469, 511 |
| MboII | GAAGA | 6 cut(s) | 47, 50, 158, 161, 311, 518 |
| MflI | RGATCY | 1 cut(s) | 469 |
| MhlI | GDGCHC | 5 cut(s) | 74, 88, 185, 199, 433 |
| MlsI | TGGCCA | 1 cut(s) | 415 |
| MluCI | AATT | 4 cut(s) | 41, 152, 409, 689 |
| MluI | ACGCGT | 1 cut(s) | 105 |
| MluNI | TGGCCA | 1 cut(s) | 415 |
| MlyI | GAGTC | 2 cut(s) | 349, 689 |
| MmeI | TCCRAC | 3 cut(s) | 273, 352, 612 |
| MnlI | CCTC | 8 cut(s) | 130, 275, 356, 430, 448, 540, 575, 650 |
| Mox20I | TGGCCA | 1 cut(s) | 415 |
| MscI | TGGCCA | 1 cut(s) | 415 |
| MseI | TTAA | 1 cut(s) | 132 |
| MslI | CAYNNNNRTG | 1 cut(s) | 308 |
| Msp20I | TGGCCA | 1 cut(s) | 415 |
| MspA1I | CMGCKG | 1 cut(s) | 480 |
| MspI | CCGG | 2 cut(s) | 261, 360 |
| MspR9I | CCNGG | 4 cut(s) | 67, 178, 262, 360 |
| Mva1269I | GAATGC | 2 cut(s) | 201, 490 |
| MvaI | CCWGG | 2 cut(s) | 67, 178 |
| MvnI | CGCG | 6 cut(s) | 107, 280, 453, 460, 466, 534 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 113, 679 |
| NciI | CCSGG | 2 cut(s) | 262, 360 |
| NdeII | GATC | 3 cut(s) | 28, 469, 511 |
| NlaIII | CATG | 2 cut(s) | 313, 686 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 73, 184 |
| NruI | TCGCGA | 1 cut(s) | 453 |
| PctI | GAATGC | 2 cut(s) | 201, 490 |
| PflFI | GACNNNGTC | 1 cut(s) | 698 |
| PfoI | TCCNGGA | 1 cut(s) | 358 |
| PkrI | GCNGC | 6 cut(s) | 58, 169, 374, 479, 490, 559 |
| PleI | GAGTC | 2 cut(s) | 349, 689 |
| PpsI | GAGTC | 2 cut(s) | 349, 689 |
| PshBI | ATTAAT | 1 cut(s) | 132 |
| Psp6I | CCWGG | 2 cut(s) | 65, 176 |
| PspFI | CCCAGC | 2 cut(s) | 271, 375 |
| PspGI | CCWGG | 2 cut(s) | 65, 176 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 73, 184 |
| PspPI | GGNCC | 4 cut(s) | 63, 174, 269, 333 |
| PstI | CTGCAG | 1 cut(s) | 493 |
| PsuI | RGATCY | 1 cut(s) | 469 |
| PsyI | GACNNNGTC | 1 cut(s) | 698 |
| RruI | TCGCGA | 1 cut(s) | 453 |
| RsaI | GTAC | 1 cut(s) | 314 |
| RsaNI | GTAC | 1 cut(s) | 313 |
| RseI | CAYNNNNRTG | 1 cut(s) | 308 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 6 cut(s) | 57, 168, 373, 478, 489, 558 |
| Sau3AI | GATC | 3 cut(s) | 28, 469, 511 |
| Sau96I | GGNCC | 4 cut(s) | 63, 174, 269, 333 |
| SchI | GAGTC | 2 cut(s) | 349, 689 |
| ScrFI | CCNGG | 4 cut(s) | 67, 178, 262, 360 |
| SduI | GDGCHC | 5 cut(s) | 74, 88, 185, 199, 433 |
| SetI | ASST | 4 cut(s) | 68, 179, 286, 496 |
| SfaNI | GCATC | 2 cut(s) | 115, 289 |
| SfcI | CTRYAG | 1 cut(s) | 489 |
| SinI | GGWCC | 2 cut(s) | 63, 174 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 308 |
| Sse9I | AATT | 4 cut(s) | 41, 152, 409, 689 |
| SsiI | CCGC | 7 cut(s) | 278, 372, 460, 478, 534, 558, 582 |
| SspMI | CTAG | 3 cut(s) | 209, 341, 473 |
| StyD4I | CCNGG | 4 cut(s) | 65, 176, 260, 358 |
| TaaI | ACNGT | 1 cut(s) | 317 |
| TaqI | TCGA | 5 cut(s) | 27, 118, 394, 663, 702 |
| TasI | AATT | 4 cut(s) | 41, 152, 409, 689 |
| TauI | GCSGC | 3 cut(s) | 375, 480, 560 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 1 cut(s) | 655 |
| TseI | GCWGC | 3 cut(s) | 56, 167, 488 |
| TspDTI | ATGAA | 1 cut(s) | 194 |
| TspRI | CASTG | 1 cut(s) | 655 |
| Tth111I | GACNNNGTC | 1 cut(s) | 698 |
| VneI | GTGCAC | 1 cut(s) | 429 |
| VpaK11BI | GGWCC | 2 cut(s) | 63, 174 |
| VspI | ATTAAT | 1 cut(s) | 132 |
| XbaI | TCTAGA | 1 cut(s) | 208 |
| XspI | CTAG | 3 cut(s) | 209, 341, 473 |