Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 790 |
| Acc36I | ACCTGC | 1 cut(s) | 281 |
| AccB1I | GGYRCC | 1 cut(s) | 179 |
| AccBSI | CCGCTC | 2 cut(s) | 345, 352 |
| AccII | CGCG | 4 cut(s) | 252, 259, 333, 909 |
| AciI | CCGC | 9 cut(s) | 259, 333, 343, 350, 381, 748, 847, 863, 907 |
| AclWI | GGATC | 3 cut(s) | 276, 817, 830 |
| AcoI | YGGCCR | 1 cut(s) | 212 |
| AcuI | CTGAAG | 1 cut(s) | 385 |
| AfaI | GTAC | 3 cut(s) | 231, 732, 920 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 204, 335, 464, 734 |
| AflIII | ACRYGT | 1 cut(s) | 789 |
| AgeI | ACCGGT | 2 cut(s) | 727, 874 |
| AgsI | TTSAA | 1 cut(s) | 617 |
| AjnI | CCWGG | 2 cut(s) | 242, 448 |
| Alw26I | GTCTC | 3 cut(s) | 230, 248, 776 |
| AlwI | GGATC | 3 cut(s) | 276, 817, 830 |
| AoxI | GGCC | 5 cut(s) | 115, 212, 451, 690, 796 |
| ApeKI | GCWGC | 3 cut(s) | 56, 287, 356 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 389, 421 |
| AsiGI | ACCGGT | 2 cut(s) | 727, 874 |
| AspLEI | GCGC | 1 cut(s) | 539 |
| AspS9I | GGNCC | 3 cut(s) | 520, 691, 797 |
| AsuC2I | CCSGG | 2 cut(s) | 159, 581 |
| AsuHPI | GGTGA | 1 cut(s) | 499 |
| AvaII | GGWCC | 1 cut(s) | 520 |
| BaeGI | GKGCMC | 2 cut(s) | 184, 265 |
| BalI | TGGCCA | 1 cut(s) | 214 |
| BamHI | GGATCC | 1 cut(s) | 822 |
| BanI | GGYRCC | 1 cut(s) | 179 |
| BanII | GRGCYC | 2 cut(s) | 720, 742 |
| BbvI | GCAGC | 3 cut(s) | 43, 299, 343 |
| BccI | CCATC | 6 cut(s) | 198, 223, 458, 467, 555, 891 |
| BceAI | ACGGC | 3 cut(s) | 130, 705, 834 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 38, 61, 72, 95, 587, 621 |
| BciT130I | CCWGG | 2 cut(s) | 244, 450 |
| BclI | TGATCA | 1 cut(s) | 28 |
| BcnI | CCSGG | 2 cut(s) | 159, 581 |
| BcoDI | GTCTC | 3 cut(s) | 230, 248, 776 |
| BfaI | CTAG | 1 cut(s) | 734 |
| BfoI | RGCGCY | 1 cut(s) | 540 |
| BfuAI | ACCTGC | 1 cut(s) | 281 |
| BisI | GCNGC | 5 cut(s) | 57, 288, 350, 357, 907 |
| BlsI | GCNGC | 5 cut(s) | 58, 289, 351, 358, 908 |
| BmcAI | AGTACT | 1 cut(s) | 920 |
| Bme1390I | CCNGG | 4 cut(s) | 159, 244, 450, 581 |
| Bme18I | GGWCC | 1 cut(s) | 520 |
| BmgT120I | GGNCC | 3 cut(s) | 520, 691, 797 |
| BmiI | GGNNCC | 6 cut(s) | 6, 181, 550, 739, 799, 824 |
| BmrFI | CCNGG | 4 cut(s) | 159, 244, 450, 581 |
| BmsI | GCATC | 4 cut(s) | 81, 429, 759, 781 |
| BoxI | GACNNNNGTC | 1 cut(s) | 518 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 409, 441 |
| BpuMI | CCSGG | 2 cut(s) | 159, 581 |
| Bsa29I | ATCGAT | 1 cut(s) | 462 |
| BsaI | GGTCTC | 1 cut(s) | 776 |
| BsaJI | CCNNGG | 1 cut(s) | 516 |
| BsaWI | WCCGGW | 3 cut(s) | 232, 727, 874 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 204, 335, 464, 734 |
| Bse118I | RCCGGY | 2 cut(s) | 727, 874 |
| Bse1I | ACTGG | 2 cut(s) | 140, 670 |
| BseBI | CCWGG | 2 cut(s) | 244, 450 |
| BseCI | ATCGAT | 1 cut(s) | 462 |
| BseDI | CCNNGG | 1 cut(s) | 516 |
| BseGI | GGATG | 4 cut(s) | 215, 772, 858, 923 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 204, 335, 464, 734 |
| BseMII | CTCAG | 1 cut(s) | 74 |
| BseNI | ACTGG | 2 cut(s) | 140, 670 |
| BseSI | GKGCMC | 2 cut(s) | 184, 265 |
| BseXI | GCAGC | 3 cut(s) | 43, 299, 343 |
| BseYI | CCCAGC | 1 cut(s) | 174 |
| BsgI | GTGCAG | 1 cut(s) | 628 |
| Bsh1236I | CGCG | 4 cut(s) | 252, 259, 333, 909 |
| Bsh1285I | CGRYCG | 2 cut(s) | 532, 879 |
| BshFI | GGCC | 5 cut(s) | 117, 214, 453, 692, 798 |
| BshNI | GGYRCC | 1 cut(s) | 179 |
| BshTI | ACCGGT | 2 cut(s) | 727, 874 |
| BshVI | ATCGAT | 1 cut(s) | 462 |
| BsiEI | CGRYCG | 2 cut(s) | 532, 879 |
| BsiSI | CCGG | 6 cut(s) | 159, 233, 580, 728, 795, 875 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 204, 335, 464, 734 |
| BsmAI | GTCTC | 3 cut(s) | 230, 248, 776 |
| BsmBI | CGTCTC | 1 cut(s) | 248 |
| BsmI | GAATGC | 1 cut(s) | 289 |
| BsnI | GGCC | 5 cut(s) | 117, 214, 453, 692, 798 |
| Bso31I | GGTCTC | 1 cut(s) | 776 |
| Bsp1286I | GDGCHC | 4 cut(s) | 184, 265, 720, 742 |
| Bsp143I | GATC | 4 cut(s) | 28, 268, 822, 880 |
| Bsp19I | CCATGG | 1 cut(s) | 516 |
| Bsp68I | TCGCGA | 1 cut(s) | 252 |
| BspACI | CCGC | 9 cut(s) | 259, 333, 343, 350, 381, 748, 847, 863, 907 |
| BspANI | GGCC | 5 cut(s) | 117, 214, 453, 692, 798 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspDI | ATCGAT | 1 cut(s) | 462 |
| BspFNI | CGCG | 4 cut(s) | 252, 259, 333, 909 |
| BspLI | GGNNCC | 6 cut(s) | 6, 181, 550, 739, 799, 824 |
| BspMI | ACCTGC | 1 cut(s) | 281 |
| BspPI | GGATC | 3 cut(s) | 276, 817, 830 |
| BspT107I | GGYRCC | 1 cut(s) | 179 |
| BspTNI | GGTCTC | 1 cut(s) | 776 |
| BsrBI | CCGCTC | 2 cut(s) | 345, 352 |
| BsrFI | RCCGGY | 2 cut(s) | 727, 874 |
| BsrI | ACTGG | 2 cut(s) | 140, 670 |
| BssAI | RCCGGY | 2 cut(s) | 727, 874 |
| BssECI | CCNNGG | 1 cut(s) | 516 |
| BssMI | GATC | 4 cut(s) | 28, 268, 822, 880 |
| BssT1I | CCWWGG | 1 cut(s) | 516 |
| Bst2UI | CCWGG | 2 cut(s) | 244, 450 |
| Bst4CI | ACNGT | 2 cut(s) | 530, 545 |
| Bst6I | CTCTTC | 2 cut(s) | 33, 655 |
| BstC8I | GCNNGC | 5 cut(s) | 261, 277, 347, 354, 455 |
| BstDEI | CTNAG | 3 cut(s) | 60, 682, 889 |
| BstDSI | CCRYGG | 1 cut(s) | 516 |
| BstF5I | GGATG | 4 cut(s) | 215, 772, 858, 923 |
| BstFNI | CGCG | 4 cut(s) | 252, 259, 333, 909 |
| BstH2I | RGCGCY | 1 cut(s) | 540 |
| BstHHI | GCGC | 1 cut(s) | 539 |
| BstKTI | GATC | 4 cut(s) | 31, 271, 825, 883 |
| BstMAI | GTCTC | 3 cut(s) | 230, 248, 776 |
| BstMBI | GATC | 4 cut(s) | 28, 268, 822, 880 |
| BstMCI | CGRYCG | 2 cut(s) | 532, 879 |
| BstNI | CCWGG | 2 cut(s) | 244, 450 |
| BstNSI | RCATGY | 2 cut(s) | 754, 793 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 518 |
| BstSCI | CCNGG | 4 cut(s) | 157, 242, 448, 579 |
| BstSLI | GKGCMC | 2 cut(s) | 184, 265 |
| BstUI | CGCG | 4 cut(s) | 252, 259, 333, 909 |
| BstV1I | GCAGC | 3 cut(s) | 43, 299, 343 |
| BstX2I | RGATCY | 2 cut(s) | 268, 822 |
| BstYI | RGATCY | 2 cut(s) | 268, 822 |
| Bsu15I | ATCGAT | 1 cut(s) | 462 |
| BsuRI | GGCC | 5 cut(s) | 117, 214, 453, 692, 798 |
| BsuTUI | ATCGAT | 1 cut(s) | 462 |
| BtgI | CCRYGG | 1 cut(s) | 516 |
| BtsCI | GGATG | 4 cut(s) | 215, 772, 858, 923 |
| BtsIMutI | CAGTG | 2 cut(s) | 550, 663 |
| BtuMI | TCGCGA | 1 cut(s) | 252 |
| BveI | ACCTGC | 1 cut(s) | 281 |
| Cac8I | GCNNGC | 5 cut(s) | 261, 277, 347, 354, 455 |
| CfoI | GCGC | 1 cut(s) | 539 |
| Cfr10I | RCCGGY | 2 cut(s) | 727, 874 |
| Cfr13I | GGNCC | 3 cut(s) | 520, 691, 797 |
| ClaI | ATCGAT | 1 cut(s) | 462 |
| CseI | GACGC | 2 cut(s) | 107, 265 |
| Csp6I | GTAC | 3 cut(s) | 230, 731, 919 |
| CspAI | ACCGGT | 2 cut(s) | 727, 874 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 546, 581 |
| CviAII | CATG | 4 cut(s) | 482, 517, 751, 790 |
| CviQI | GTAC | 3 cut(s) | 230, 731, 919 |
| DdeI | CTNAG | 3 cut(s) | 60, 682, 889 |
| DpnI | GATC | 4 cut(s) | 30, 270, 824, 882 |
| DpnII | GATC | 4 cut(s) | 28, 268, 822, 880 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 790 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 790 |
| EaeI | YGGCCR | 1 cut(s) | 212 |
| Eam1104I | CTCTTC | 2 cut(s) | 33, 655 |
| EarI | CTCTTC | 2 cut(s) | 33, 655 |
| EciI | GGCGGA | 1 cut(s) | 836 |
| Eco130I | CCWWGG | 1 cut(s) | 516 |
| Eco24I | GRGCYC | 2 cut(s) | 720, 742 |
| Eco31I | GGTCTC | 1 cut(s) | 776 |
| Eco32I | GATATC | 1 cut(s) | 436 |
| Eco47I | GGWCC | 1 cut(s) | 520 |
| Eco57I | CTGAAG | 1 cut(s) | 385 |
| EcoRII | CCWGG | 2 cut(s) | 242, 448 |
| EcoRV | GATATC | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 1 cut(s) | 516 |
| EcoT22I | ATGCAT | 1 cut(s) | 774 |
| EcoT38I | GRGCYC | 2 cut(s) | 720, 742 |
| ErhI | CCWWGG | 1 cut(s) | 516 |
| Esp3I | CGTCTC | 1 cut(s) | 248 |
| FaeI | CATG | 4 cut(s) | 485, 520, 754, 793 |
| FatI | CATG | 4 cut(s) | 481, 516, 750, 789 |
| FauI | CCCGC | 2 cut(s) | 252, 870 |
| FbaI | TGATCA | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 5 cut(s) | 57, 288, 350, 357, 907 |
| FokI | GGATG | 4 cut(s) | 202, 759, 845, 910 |
| FriOI | GRGCYC | 2 cut(s) | 720, 742 |
| Fsp4HI | GCNGC | 5 cut(s) | 57, 288, 350, 357, 907 |
| FspBI | CTAG | 1 cut(s) | 734 |
| GlaI | GCGC | 1 cut(s) | 538 |
| GluI | GCNGC | 5 cut(s) | 57, 288, 350, 357, 907 |
| GsaI | CCCAGC | 1 cut(s) | 178 |
| HaeII | RGCGCY | 1 cut(s) | 540 |
| HaeIII | GGCC | 5 cut(s) | 117, 214, 453, 692, 798 |
| HapII | CCGG | 6 cut(s) | 159, 233, 580, 728, 795, 875 |
| HgaI | GACGC | 2 cut(s) | 107, 265 |
| HhaI | GCGC | 1 cut(s) | 539 |
| Hin1II | CATG | 4 cut(s) | 485, 520, 754, 793 |
| Hin6I | GCGC | 1 cut(s) | 537 |
| HinP1I | GCGC | 1 cut(s) | 537 |
| HincII | GTYRAC | 2 cut(s) | 131, 502 |
| HindII | GTYRAC | 2 cut(s) | 131, 502 |
| HinfI | GANTC | 2 cut(s) | 154, 494 |
| HpaII | CCGG | 6 cut(s) | 159, 233, 580, 728, 795, 875 |
| HphI | GGTGA | 1 cut(s) | 499 |
| Hpy166II | GTNNAC | 3 cut(s) | 131, 230, 502 |
| Hpy188I | TCNGA | 5 cut(s) | 63, 149, 404, 722, 938 |
| Hpy188III | TCNNGA | 7 cut(s) | 32, 251, 373, 614, 805, 820, 826 |
| Hpy8I | GTNNAC | 3 cut(s) | 131, 230, 502 |
| Hpy99I | CGWCG | 2 cut(s) | 602, 769 |
| HpyAV | CCTTC | 3 cut(s) | 144, 335, 811 |
| HpyCH4III | ACNGT | 2 cut(s) | 530, 545 |
| HpyCH4V | TGCA | 4 cut(s) | 287, 481, 645, 772 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 682, 889 |
| Hsp92II | CATG | 4 cut(s) | 485, 520, 754, 793 |
| HspAI | GCGC | 1 cut(s) | 537 |
| Ksp22I | TGATCA | 1 cut(s) | 28 |
| Kzo9I | GATC | 4 cut(s) | 28, 268, 822, 880 |
| LmnI | GCTCC | 1 cut(s) | 737 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 299, 343 |
| LweI | GCATC | 4 cut(s) | 81, 429, 759, 781 |
| MaeI | CTAG | 1 cut(s) | 734 |
| MaeIII | GTNAC | 2 cut(s) | 592, 685 |
| MalI | GATC | 4 cut(s) | 30, 270, 824, 882 |
| MbiI | CCGCTC | 2 cut(s) | 345, 352 |
| MboI | GATC | 4 cut(s) | 28, 268, 822, 880 |
| MboII | GAAGA | 3 cut(s) | 50, 642, 835 |
| MflI | RGATCY | 2 cut(s) | 268, 822 |
| MhlI | GDGCHC | 4 cut(s) | 184, 265, 720, 742 |
| MlsI | TGGCCA | 1 cut(s) | 214 |
| MluCI | AATT | 3 cut(s) | 208, 488, 603 |
| MluNI | TGGCCA | 1 cut(s) | 214 |
| MlyI | GAGTC | 1 cut(s) | 148 |
| MmeI | TCCRAC | 1 cut(s) | 411 |
| Mox20I | TGGCCA | 1 cut(s) | 214 |
| Mph1103I | ATGCAT | 1 cut(s) | 774 |
| MscI | TGGCCA | 1 cut(s) | 214 |
| MseI | TTAA | 1 cut(s) | 44 |
| Msp20I | TGGCCA | 1 cut(s) | 214 |
| MspI | CCGG | 6 cut(s) | 159, 233, 580, 728, 795, 875 |
| MspR9I | CCNGG | 4 cut(s) | 159, 244, 450, 581 |
| Mva1269I | GAATGC | 1 cut(s) | 289 |
| MvaI | CCWGG | 2 cut(s) | 244, 450 |
| MvnI | CGCG | 4 cut(s) | 252, 259, 333, 909 |
| NciI | CCSGG | 2 cut(s) | 159, 581 |
| NcoI | CCATGG | 1 cut(s) | 516 |
| NdeII | GATC | 4 cut(s) | 28, 268, 822, 880 |
| NlaIII | CATG | 4 cut(s) | 485, 520, 754, 793 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 181, 550, 739, 799, 824 |
| NmuCI | GTSAC | 1 cut(s) | 685 |
| NruI | TCGCGA | 1 cut(s) | 252 |
| NsiI | ATGCAT | 1 cut(s) | 774 |
| NspI | RCATGY | 2 cut(s) | 754, 793 |
| PciI | ACATGT | 1 cut(s) | 789 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 120 |
| PctI | GAATGC | 1 cut(s) | 289 |
| PfeI | GAWTC | 1 cut(s) | 494 |
| PfoI | TCCNGGA | 1 cut(s) | 157 |
| PinAI | ACCGGT | 2 cut(s) | 727, 874 |
| PkrI | GCNGC | 5 cut(s) | 58, 289, 351, 358, 908 |
| PleI | GAGTC | 1 cut(s) | 148 |
| PpsI | GAGTC | 1 cut(s) | 148 |
| PscI | ACATGT | 1 cut(s) | 789 |
| PshAI | GACNNNNGTC | 1 cut(s) | 518 |
| Psp6I | CCWGG | 2 cut(s) | 242, 448 |
| PspFI | CCCAGC | 1 cut(s) | 174 |
| PspGI | CCWGG | 2 cut(s) | 242, 448 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 181, 550, 739, 799, 824 |
| PspPI | GGNCC | 3 cut(s) | 520, 691, 797 |
| PsuI | RGATCY | 2 cut(s) | 268, 822 |
| RruI | TCGCGA | 1 cut(s) | 252 |
| RsaI | GTAC | 3 cut(s) | 231, 732, 920 |
| RsaNI | GTAC | 3 cut(s) | 230, 731, 919 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| SatI | GCNGC | 5 cut(s) | 57, 288, 350, 357, 907 |
| Sau3AI | GATC | 4 cut(s) | 28, 268, 822, 880 |
| Sau96I | GGNCC | 3 cut(s) | 520, 691, 797 |
| ScaI | AGTACT | 1 cut(s) | 920 |
| SchI | GAGTC | 1 cut(s) | 148 |
| ScrFI | CCNGG | 4 cut(s) | 159, 244, 450, 581 |
| SduI | GDGCHC | 4 cut(s) | 184, 265, 720, 742 |
| SetI | ASST | 7 cut(s) | 295, 315, 327, 475, 512, 650, 895 |
| SfaNI | GCATC | 4 cut(s) | 81, 429, 759, 781 |
| SinI | GGWCC | 1 cut(s) | 520 |
| Sse9I | AATT | 3 cut(s) | 208, 488, 603 |
| SsiI | CCGC | 9 cut(s) | 259, 333, 343, 350, 381, 748, 847, 863, 907 |
| SspI | AATATT | 1 cut(s) | 620 |
| SspMI | CTAG | 1 cut(s) | 734 |
| StyD4I | CCNGG | 4 cut(s) | 157, 242, 448, 579 |
| StyI | CCWWGG | 1 cut(s) | 516 |
| TaaI | ACNGT | 2 cut(s) | 530, 545 |
| TaqI | TCGA | 6 cut(s) | 193, 309, 462, 512, 879, 895 |
| TasI | AATT | 3 cut(s) | 208, 488, 603 |
| TatI | WGTACW | 1 cut(s) | 918 |
| TauI | GCSGC | 2 cut(s) | 352, 909 |
| TfiI | GAWTC | 1 cut(s) | 494 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 2 cut(s) | 550, 670 |
| TseFI | GTSAC | 1 cut(s) | 685 |
| TseI | GCWGC | 3 cut(s) | 56, 287, 356 |
| Tsp45I | GTSAC | 1 cut(s) | 685 |
| TspDTI | ATGAA | 1 cut(s) | 625 |
| TspGWI | ACGGA | 2 cut(s) | 116, 615 |
| TspRI | CASTG | 2 cut(s) | 550, 670 |
| VpaK11BI | GGWCC | 1 cut(s) | 520 |
| XceI | RCATGY | 2 cut(s) | 754, 793 |
| XspI | CTAG | 1 cut(s) | 734 |
| ZrmI | AGTACT | 1 cut(s) | 920 |
| Zsp2I | ATGCAT | 1 cut(s) | 774 |